mRNA_H-paniculata_contig519.12533.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: D7G5K9_ECTSI (HA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K9_ECTSI) HSP 1 Score: 107 bits (266), Expect = 2.940e-25 Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 4 QVFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIWADAGEAS 234
QV++AL++YK HGNL +PVAF VPS PW + WGLALGQRV DIR HRYI+ P+RIR LN++GF W DA +AS
Sbjct: 329 QVYDALLQYKAEHGNLHVPVAFSVPSSPPWHQDLWGLALGQRVLDIRATHRYIRNDPERIRLLNEVGFRWTDATKAS 405
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A482RVD4_9ARCH (HA domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVD4_9ARCH) HSP 1 Score: 84.3 bits (207), Expect = 2.590e-17 Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 7 VFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIWADAGEA 231
++ AL YKQVHGN+ +P++F VPSY+PWP + WGL LG RV IR H + P+R L+ LGF+W + +
Sbjct: 93 IYLALQAYKQVHGNVDVPLSFVVPSYEPWPVDVWGLKLGLRVQAIRKHDSLVSRAPERRALLDALGFVWVSSNRS 167
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A7S3YVR9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YVR9_9EUKA) HSP 1 Score: 81.6 bits (200), Expect = 2.380e-16 Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 4 QVFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIWAD 219
+V+E+LVRYK+++GNL IP F VP D WP+ W LGQRV +IR Y+K P RI LN LGF+W D
Sbjct: 69 KVWESLVRYKKLYGNLVIPHGFVVPQNDQWPSHLWDFGLGQRVRNIRSIGLYVKNDPFRIEMLNDLGFVWDD 140
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A6H5L2W1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W1_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 9.030e-14 Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 7 VFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQR----------VYDIRVHHRYIKVHPDRIRALNKLGFIW 213
V++AL++YK HGNL +PVAFRVPS PW + WGLALGQR +Y +R + + HP+ + LGF W
Sbjct: 8 VYDALLQYKAEHGNLHVPVAFRVPSSPPWHQDLWGLALGQRCSAFCVAGSMLYGLRRNPDRLNRHPEIRAEITALGFSW 86
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A7S1G2X8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G2X8_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.240e-13 Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 1 NQVFEALVRYKQVHGNLRIPVAFRVPSYDP-WPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIW 213
N V EAL+ YK V+G+L +P++F VP D WPA TWG+ LG VY IR ++ +P+RI LN + F+W
Sbjct: 201 NLVVEALLTYKNVYGDLMVPLSFIVPHGDEYWPAATWGIGLGNIVYRIRSRQGFVAGNPERIDQLNGMDFVW 272
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A7S4SEJ8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SEJ8_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.250e-13 Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 1
Query: 4 QVFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIW 213
+V++ALVRYK+++G+L IP F VP + W E WGL LG RV IR ++K +P R L++LGF W
Sbjct: 93 KVYDALVRYKEINGDLLIPQPFVVPENNDWSEEMWGLRLGARVNAIRSQGTFVKTNPARKEELDELGFEW 162
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A6U3VLR0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VLR0_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.280e-13 Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 1
Query: 4 QVFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIW 213
+V++ALVRYK+++G+L IP F VP + W E WGL LG RV IR ++K +P R L++LGF W
Sbjct: 396 KVYDALVRYKEINGDLLIPQPFVVPENNDWSEEMWGLRLGARVNAIRSQGTFVKTNPARKEELDELGFEW 465
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: B5YMG0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMG0_THAPS) HSP 1 Score: 69.7 bits (169), Expect = 3.960e-12 Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 4 QVFEALVRYKQVHGNLRIPVAFRVPSYD-PWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIW 213
+V++ALV+YK+++G+L +P F VP WP E WGL LG RV +R ++K P R L+ LGF+W
Sbjct: 281 RVYDALVKYKELYGDLLVPQPFTVPEDSGDWPEEVWGLRLGARVNAMRSQGTFVKSDPSRKEELDNLGFVW 351
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A067CCS3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CCS3_SAPPC) HSP 1 Score: 68.6 bits (166), Expect = 9.450e-12 Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 16 ALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIWADAGEA 231
AL Y++++GNL +P F VP +D WP+E W L LG V R H ++ P+R+ ALN LGF+W D EA
Sbjct: 194 ALATYRKIYGNLHVPRDFVVPVHDGWPSEIWQLQLGDAVATFR--HHVDRLLPERVDALNALGFVW-DMNEA 262
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A7S3QCY2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QCY2_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.380e-11 Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 1 NQVFEALVRYKQVHGNLRIPVAFRVPS-YDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIW 213
N V++ALVRYK+++G+L +P F V W WGL LG RV IR ++K +P R LNKLGF W
Sbjct: 297 NNVYDALVRYKEINGDLLVPQPFIVAEGSSDWEERFWGLRLGARVNAIRSQGTFVKTNPSRKELLNKLGFEW 368 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig519.12533.1 >prot_H-paniculata_contig519.12533.1 ID=prot_H-paniculata_contig519.12533.1|Name=mRNA_H-paniculata_contig519.12533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp NQVFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVHback to top mRNA from alignment at H-paniculata_contig519:35179..35924+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig519.12533.1 ID=mRNA_H-paniculata_contig519.12533.1|Name=mRNA_H-paniculata_contig519.12533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=746bp|location=Sequence derived from alignment at H-paniculata_contig519:35179..35924+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig519:35179..35924+ >mRNA_H-paniculata_contig519.12533.1 ID=mRNA_H-paniculata_contig519.12533.1|Name=mRNA_H-paniculata_contig519.12533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig519:35179..35924+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |