prot_H-paniculata_contig519.12531.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig519.12531.1
Unique Nameprot_H-paniculata_contig519.12531.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1297
Homology
BLAST of mRNA_H-paniculata_contig519.12531.1 vs. uniprot
Match: A0A6H5LGC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 5.810e-63
Identity = 420/1335 (31.46%), Postives = 532/1335 (39.85%), Query Frame = 0
Query:    2 RTENIRPGQLCFDAALQACAQTGAGTQALSILTEMTSLSPPAAGDGGDRSFTTASGDEVEVGGTTAESEKVVGAAAGSLSESAGAPKPGSINSYRLCMEAFRRSGDAAGALSVLARMRAEGWQPDVACFNEALRACAEGGGRWKRAMGFLEEMQYAGLVPNGVSYSTTLQACESSAGEEGVAEAACALIHTMSSSSASHVVLATYPNADSDXXXXXXXXXXXXXXXXNSLRP-TARDYLAAMRACGGSVSGSXXXXXXXXXXXXXXXXXXRMPDWRSALRLLSEVKLATASHKIRAVKQASTTSLFRKYSNGNSESSXXXXXXXXXXXGNDNRKPLVETRQQETSTATSEGQSIGTEKKNVQARGVTGSGKTIPANVPPTAEAGQIAEQLVPFGELSQEHYHAAIAACGGGGNTNGVLSLLSELRSRGKDG----SXXXXXXXXXXXXXXXXXEGEKEEMLLLAAEATRAAAEARIIPRLLPATYAVAAEALADAAEWEWCLVLLEELEQQQILDGDKKDKVLSTCPLCLTGFVMIFTIIYIALLLNCSLLYPPSPKPVPSFIARPRHDTGAPQTLEDLDVAMEVVIDSETGMPATDAVAAAKRRGVTDTIRT---------YIAALRACGKGRAEPRDVLGVLERIRWAGVVEANEGVYAAAIRALRVCGSDGGGGXXXXXXXXXXXXGASEAARDLIEWD-GKRGSTG-ANLFLYSAAIKVCAEEDEIAAAKELFLEARKSDGASVDPPSDIAEAALAAATKAAREGLEKPDTPPRLNRGLEAVYNAMLEVCVAAGDGSLARDVLRWMKMERFEPAALSYTLAIKACCNRPSSLSHETTANPRRRSERTSSDSLPNITAPDMTSTRR----PAAQILDRGSESSGGGVNKR----GEWAAAQSAAGAGSRSRPPLPPPRVLRDEDDGREWVV------------VPGGRRQSPFAEDQVDEG-FARKVAAAKEKQFASKIFAA---RKDKARVRERQQR--------------GERGSQPDDVGKGNAGEPAPXXXXXXXXXXXXXXLQFPSPQAA----DGDATPAVKPSSGSTVVTQ-----GGVRFNFGAKKGVDWDKVWELASPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEPRTERTSVEPTPTRTVDVGGSIVAADSTAXXXXXVLPTTPTSIPQPNSGASTSVDVSSSGITILPTRTTDYGGAAAAAGTXXXXXXXXXXXXXXVEWERACALLSDMEVAQL--KPPVEAFEAVLGACIVAGKVGEALEVAQAMEGVGYRPDGGLLTRLTMSHADVLEREAQEIAAAAAGPPEDWG 1271
            +++ I PGQLCF              +A S+L EM +L                 G+E  V  +   +  V       LSE   AP+  S +SYRL MEA RR GD  G +S    M  EG++PDV        ACAEGGGR++RA  FLEEM+ AGL P+ VSYS  L ACES   +EG A+ A  LI T+S+S++      +  +A+                    L P ++RDYLAA+ AC       XXXXXXXXXXXXXXXXXX                 +                                                                                         PP                L  EHY AA+ ACG GGN  GVL LLSELR  G  G    S       XXXXXXXXXX                    A ++P L PA YA AA ALAD  EWEWCLVLLEELEQ   LD D+ D                              +      P        R D  AP+T+      + V +D E+G  A  A A                      Y AA+RACGKG A  + V+G+LER+RWAGV +  E  YAAAI A R CG    G              A EAAR L+E + G+ G+   A+ FLY                +  F+E R++ G + D  +++A             G   P  P R+N G+EAVY + L +C AAGDGSLARDVLRWMK+E F+ +  +Y LAI+ACCN   ++  ++ A P+++S           T P  TS +R    P A      S     GV ++    GE   ++  + A              RD+ D  +  V            VPG    +   ++ V+ G  A KV AA           +   ++ +  + E ++R              G R S P+    GN    AP                      A     GD  P  +    +T  T      GG      A+  V       + SP   XXXXXXXXXXXX                         R  R+S +    RT  V    V A    XXXXX                                              XXXXXXXXXXXXXX +WERA A+L DM  A     PP EAF AVLGAC  AG+VGEALE+AQ M G G+ P   L+TRL  SHAD L+RE +E+  AAA P E+WG
Sbjct:  320 KSDGIEPGQLCFXXXXXXXXXXXXXARATSLLAEMATLE--------SEQRLAREGEEENVSLSLGANNGV--RTVPQLSEDDAAPRR-STDSYRLGMEACRRGGDTRGVMSTFVIMEEEGFEPDV--------ACAEGGGRFERAAAFLEEMKEAGLCPDNVSYSAALLACESCHDQEGAAKTAFDLIQTISASASESPDAGSNADANGGGESKPAGESTGSGGPVAPLSPPSSRDYLAALHACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-----------------------------------------------------------------------------------------PPPC--------------LLPEHYCAAMTACGRGGNAQGVLELLSELREAGAGGVAASSGAPLDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGMLPSLSPAIYAAAANALADVGEWEWCLVLLEELEQ---LDADQDDNATGAXXXXXXXXXXXXXXXXXXXXXXXXNINEEREVPEDG-----RGDAAAPETV------LRVELD-ESGALAAPASATXXXXXXXXXXXXXXXXXXXXXYTAAVRACGKGGAGVQAVVGLLERMRWAGV-DPGEDAYAAAISAFRACG----GAREGEEASGRGVLSAEEAARALVEHETGRDGAADWASPFLY----------------RLFFVEGRRAAGVATDDAAEVAXXXXXXXXXXXDSGTA-PKRPARVNPGVEAVYMSCLTMCAAAGDGSLARDVLRWMKLEGFQASEEAYMLAIEACCN--PTVPQDSLAAPQQQSP---------FTTPPATSRQRLPLRPPAVANGAMSPEDLAGVRRKLFSEGEAPESEQHSAAXXXXXXXXXXXXXXRDDGDXGDNGVAAVLRLATADTSVPGVGDPASSVDEDVERGRVAEKVPAAAXXXXXXXXXXSLNPQRPQPPLGEEEERKAEERPGLEWVVIPGGRASPPEFDEDGNEKNVAPPGTMGGAAWTTGGATAGXXXXGAVGFGGGDVAPFSREGEVTTAATSRRDGDGGTTSPASARGDVSRAGAVNVLSPLAAXXXXXXXXXXXX-------------------------RGGRSSGQG---RTPRVDPDAVVAXXXXXXXXXXXX-----------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWERARAILDDMTAADHLPPPPEEAFRAVLGACDSAGRVGEALEIAQVMVGAGFSPSIALMTRLMASHADELDRERREMEEAAAEPAEEWG 1433          
BLAST of mRNA_H-paniculata_contig519.12531.1 vs. uniprot
Match: D7FX74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX74_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.680e-41
Identity = 282/934 (30.19%), Postives = 369/934 (39.51%), Query Frame = 0
Query:  397 SQEHYHAAIAACGGGGNTNGVLSLLSELRSRGKDGSXXXXXXXXXXXXXXXXXEGEKEEMLLLAAEATRAAAEARIIPRLLPATYAVAAEALADAAEWEWCLVLLEELEQQQILDGDKKDKVLSTCPLCLTGFVMIFTIIYIALLLNCSLLYPPSPKPVPSFIARPRHDTGAPQTLEDLDVAMEVVIDSETGMPATDAVAAAKRRGVTDTIR------TYIAALRACGKGRAEPRDVLGVLERIRWAGVVEANEGVYAAAIRALRVC-------GSDGGGGXXXXXXXXXXXXGASEAARDLIEWD-GKRGSTG-ANLFLYSAAIKVCAEEDEIAAAKELFLEARKSDGASVDPPSDIAEAALAAATKAAREGLEKPDTPPRLNRGLEAVYNAMLEVCVAAGDGSLARDVLRWMKMERFEPAALSYTLAIKACCNRPSSLSHETTANPRRRSERTSSDSLPNITAPDMTSTRR----PAAQILDRGSESSGGGVNKR--GEWAAAQS---AAGAGSRSRPPLPPPRVLRDEDDGREWVV--------VPGGRRQSPFAEDQVDEGFARKVAAAKEKQFASKIFAARKDKA---------RVRERQQR-------GERGSQPDDVGKGNAGEPAPXXXXXXXXXXXXXXLQFPSPQAA----DGDATPAVKPSSGSTVVTQ-----GGVRFNFGAKKGVDWDKVWELASPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEPRTERTSVEPTPTRTVDVGGSIVAADSTAXXXXXVLPTTPTSIPQPNSGASTSVDVSSSGITILPTRTTDYGGAAAAAGTXXXXXXXXXXXXXXVEWERACALLSDMEVAQL--KPPVEAFEAVLGACIVAGKVGEALEVAQAMEGVGYRPDGGLLTRLTMSHADVLEREAQEIAAAAAGPPEDWG 1271
            S + Y   + AC  GG+  GV+S    +   G +                   E  +EE    +AEAT+ AA A ++P L PA YA AA ALAD  EWEWCLVLLEELEQ   LD ++ D          TG     T                              +  AP+T+      + V +D E G  A  A A +++ G             Y AA+RACG+G A  + V+GVLER+RW GV +  E  YAAA+ A           G +G G              A EAAR L+E + G+ G+   A+ FLY                + LF+E R++ G + D  +++A             G   P  P R+N G+EAVY + L +C AAGDGSLARDVLRWMK+E F+ +  +Y LAI+ACCN   ++  ++ A P++ S           T P  TS +R    P        S     GV ++   E  A +S   +A                   DDG   V+        VPG    +   ++ V+ G   +   A                          R  ER+         G R S P+    GN     P                 P    A     GD  P  +    +T         GG      A+  V       + SP                    XXXXXXXXXX      R+ PR +  +                      XXXXX                                              XXXXXXXXXXXXXX +WERA A+L DM  A     PP EAF AVLGAC  AG+VGEALE+AQ M G G+ P   L+TRL  SHAD L+RE +E+  AAA P E+WG
Sbjct:  366 STDSYRLGMEACRRGGDARGVMSTFVIMEEEGFEADV----------------EEAEEEAASRSAEATQTAAAAEMLPSLSPAIYAAAANALADVGEWEWCLVLLEELEQ---LDAEQDDGA--------TGATATSTXXXXXXXXXXXXXX------XXXXXXXXXXEQEAPETV------LRVELD-ENGALAAPATATSQKEGSAPEAAXXXXXXAYTAAVRACGEGGAGVQTVVGVLERMRWVGV-DPGEDAYAAAVSAFXXXXXXGAREGEEGSGRGVLF---------AEEAARALVEHETGRDGAADWASPFLY----------------RMLFVEGRRAAGVATDDAAEVAXXXXXXXXXXXDSGTA-PKRPARVNAGVEAVYMSCLTMCAAAGDGSLARDVLRWMKLEGFQASEEAYMLAIEACCN--PAVPQDSPAAPQQPSS---------FTTPPATSRQRLPLPPPTFASGATSPEDLAGVRRKLFSEGEAPESEQHSAAXXXXXXXXXXXXXXXXXGDDGVAAVLRPATAGTSVPGVGDPASSVDEDVERGRVAEEMPAXXXXXXXXXXXXXXXXXXXXXXXXXXRKAERRPELEWVVIPGGRVSPPEFDEDGNEKNVTPPGTMGGAAWATGGAKAGPGGSGAVGFGGGDGAPFPREGEATTAAASRRDGDGGTTSPASARADVSRAGAVNVLSP----------------LAAAXXXXXXXXXXGRSSGQRLTPRVDPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------XXXXXXXXXXXXXXXXXXXXADWERARAILDDMTAADHLPPPPEEAFRAVLGACDSAGRVGEALEIAQVMVGAGFSPSISLMTRLIASHADELDRERREMEEAAAEPAEEWG 1167          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig519.12531.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LGC4_9PHAE5.810e-6331.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX74_ECTSI3.680e-4130.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1175..1260
e-value: 9.9E-7
score: 30.2
coord: 675..828
e-value: 1.6E-12
score: 49.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 114..173
e-value: 6.2E-4
score: 19.8
coord: 772..817
e-value: 4.7E-5
score: 23.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1202..1236
score: 8.287
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 768..802
score: 8.605
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 698..732
score: 6.829
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 397..431
score: 6.248
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 5.612
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 91..125
score: 9.032
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 606..641
score: 6.467
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 126..161
score: 9.975
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 92..172
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..523
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 524..548
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 549..1296
NoneNo IPR availableTMHMMTMhelixcoord: 518..540

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig519contigH-paniculata_contig519:387..15330 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig519.12531.1mRNA_H-paniculata_contig519.12531.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig519 334..15683 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig519.12531.1 ID=prot_H-paniculata_contig519.12531.1|Name=mRNA_H-paniculata_contig519.12531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1297bp
MRTENIRPGQLCFDAALQACAQTGAGTQALSILTEMTSLSPPAAGDGGDR
SFTTASGDEVEVGGTTAESEKVVGAAAGSLSESAGAPKPGSINSYRLCME
AFRRSGDAAGALSVLARMRAEGWQPDVACFNEALRACAEGGGRWKRAMGF
LEEMQYAGLVPNGVSYSTTLQACESSAGEEGVAEAACALIHTMSSSSASH
VVLATYPNADSDSDSDSDSSSRSNNNSNNSLRPTARDYLAAMRACGGSVS
GSSSSSSSNSSNSSNNNGNNRMPDWRSALRLLSEVKLATASHKIRAVKQA
STTSLFRKYSNGNSESSSNSSNSSMNNSGNDNRKPLVETRQQETSTATSE
GQSIGTEKKNVQARGVTGSGKTIPANVPPTAEAGQIAEQLVPFGELSQEH
YHAAIAACGGGGNTNGVLSLLSELRSRGKDGSGGGAGLRRRSGSGSEFDE
GEKEEMLLLAAEATRAAAEARIIPRLLPATYAVAAEALADAAEWEWCLVL
LEELEQQQILDGDKKDKVLSTCPLCLTGFVMIFTIIYIALLLNCSLLYPP
SPKPVPSFIARPRHDTGAPQTLEDLDVAMEVVIDSETGMPATDAVAAAKR
RGVTDTIRTYIAALRACGKGRAEPRDVLGVLERIRWAGVVEANEGVYAAA
IRALRVCGSDGGGGGGVSGGVGGGVVGASEAARDLIEWDGKRGSTGANLF
LYSAAIKVCAEEDEIAAAKELFLEARKSDGASVDPPSDIAEAALAAATKA
AREGLEKPDTPPRLNRGLEAVYNAMLEVCVAAGDGSLARDVLRWMKMERF
EPAALSYTLAIKACCNRPSSLSHETTANPRRRSERTSSDSLPNITAPDMT
STRRPAAQILDRGSESSGGGVNKRGEWAAAQSAAGAGSRSRPPLPPPRVL
RDEDDGREWVVVPGGRRQSPFAEDQVDEGFARKVAAAKEKQFASKIFAAR
KDKARVRERQQRGERGSQPDDVGKGNAGEPAPSTAAAAAAVTTPVPLQFP
SPQAADGDATPAVKPSSGSTVVTQGGVRFNFGAKKGVDWDKVWELASPSP
SPPSSPDDRGGGEGEGGGQDVIAAGAGATDETETRIEPRTERTSVEPTPT
RTVDVGGSIVAADSTAAAAAAVLPTTPTSIPQPNSGASTSVDVSSSGITI
LPTRTTDYGGAAAAAGTANVGTSGGAGGAEGVEWERACALLSDMEVAQLK
PPVEAFEAVLGACIVAGKVGEALEVAQAMEGVGYRPDGGLLTRLTMSHAD
VLEREAQEIAAAAAGPPEDWGIEMEMAGGRIQRGRPGEIDGDYMVE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat