mRNA_H-paniculata_contig519.12531.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig519.12531.1 vs. uniprot
Match: A0A6H5LGC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE) HSP 1 Score: 198 bits (503), Expect = 1.900e-47 Identity = 310/940 (32.98%), Postives = 391/940 (41.60%), Query Frame = 3
Query: 1239 LSQEHYHAAIAACGGGGNTNGVLSLLSELRSRGKDG----SXXXXXXXXXXXXXXXXXEGEKEEMLLLAAEATRAAAEARIIPRLLPATYAVAAEALADAAEWEWCLVLLEELEQQQILDGDKKDKVLSTCPLCLTGFVMIFTIIYIALLLNCSLLYPPSPKPVPSFIARPRHDTGAPQTLEDLDVAMEVVIDSETGMPATDAVAAAKRRGVTDTIRT---------YIAALRACGKGRAEPRDVLGVLERIRWAGVVEANEGVYAAAIRALRVCGSDGGGGXXXXXXXXXXXXGASEAARDLIEWD-GKRGSTG-ANLFLYSAAIKVCAEEDEIAAAKELFLEARKSDGASVDPPSDIAEAALAAATKAAREGLEKPDTPPRLNRGLEAVYNAMLEVCVAAGDGSLARDVLRWMKMERFEPAALSYTLAIKACCNRPSSLSHETTANPRRRSERTSSDSLPNITAPDMTSTRR----PAAQILDRGSESSGGGVNKR----GEWAAAQSAAGAGSRSRPPLPPPRVLRDEDDGREWVV------------VPGGRRQSPFAEDQVDEG-FARKVAAAKEKQFASKIFAA---RKDKARVRERQQR--------------GERGSQPDDVGKGNAGEPAPXXXXXXXXXXXXXXLQFPSPQAA----DGDATPAVKPSSGSTVVTQ-----GGVRFNFGAKKGVDWDKVWELASPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEPRTERTSVEPTPTRTVDVGGSIVAADSTAXXXXXVLPTTPTSIPQPNSGASTSVDVSSSGITILPTRTTDYGGAAAAAGTXXXXXXXXXXXXXXVEWERACALLSDMEVAQL--KPPVEAFEAVLGACIVAGKVGEALEVAQAMEGVGYRPDGGLLTRLTMSHADVLEREAQEIAAAAAGPPEDWG 3866
L EHY AA+ ACG GGN GVL LLSELR G G S XXXXXXXXXX A ++P L PA YA AA ALAD EWEWCLVLLEELEQ LD D+ D + P R D AP+T+ + V +D E+G A A A Y AA+RACGKG A + V+G+LER+RWAGV + E YAAAI A R CG G A EAAR L+E + G+ G+ A+ FLY + F+E R++ G + D +++A G P P R+N G+EAVY + L +C AAGDGSLARDVLRWMK+E F+ + +Y LAI+ACCN ++ ++ A P+++S T P TS +R P A S GV ++ GE ++ + A RD+ D + V VPG + ++ V+ G A KV AA + ++ + + E ++R G R S P+ GN AP A GD P + +T T GG A+ V + SP XXXXXXXXXXXX R R+S + RT V V A XXXXX XXXXXXXXXXXXXX +WERA A+L DM A PP EAF AVLGAC AG+VGEALE+AQ M G G+ P L+TRL SHAD L+RE +E+ AAA P E+WG
Sbjct: 593 LLPEHYCAAMTACGRGGNAQGVLELLSELREAGAGGVAASSGAPLDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGMLPSLSPAIYAAAANALADVGEWEWCLVLLEELEQ---LDADQDDNATGAXXXXXXXXXXXXXXXXXXXXXXXXNINEEREVPEDG-----RGDAAAPETV------LRVELD-ESGALAAPASATXXXXXXXXXXXXXXXXXXXXXYTAAVRACGKGGAGVQAVVGLLERMRWAGV-DPGEDAYAAAISAFRACG----GAREGEEASGRGVLSAEEAARALVEHETGRDGAADWASPFLY----------------RLFFVEGRRAAGVATDDAAEVAXXXXXXXXXXXDSGTA-PKRPARVNPGVEAVYMSCLTMCAAAGDGSLARDVLRWMKLEGFQASEEAYMLAIEACCN--PTVPQDSLAAPQQQSP---------FTTPPATSRQRLPLRPPAVANGAMSPEDLAGVRRKLFSEGEAPESEQHSAAXXXXXXXXXXXXXXRDDGDXGDNGVAAVLRLATADTSVPGVGDPASSVDEDVERGRVAEKVPAAAXXXXXXXXXXSLNPQRPQPPLGEEEERKAEERPGLEWVVIPGGRASPPEFDEDGNEKNVAPPGTMGGAAWTTGGATAGXXXXGAVGFGGGDVAPFSREGEVTTAATSRRDGDGGTTSPASARGDVSRAGAVNVLSPLAAXXXXXXXXXXXX-------------------------RGGRSSGQG---RTPRVDPDAVVAXXXXXXXXXXXX-----------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWERARAILDDMTAADHLPPPPEEAFRAVLGACDSAGRVGEALEIAQVMVGAGFSPSIALMTRLMASHADELDRERREMEEAAAEPAEEWG 1433
BLAST of mRNA_H-paniculata_contig519.12531.1 vs. uniprot
Match: D7FX74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX74_ECTSI) HSP 1 Score: 177 bits (448), Expect = 4.620e-41 Identity = 282/934 (30.19%), Postives = 369/934 (39.51%), Query Frame = 3
Query: 1242 SQEHYHAAIAACGGGGNTNGVLSLLSELRSRGKDGSXXXXXXXXXXXXXXXXXEGEKEEMLLLAAEATRAAAEARIIPRLLPATYAVAAEALADAAEWEWCLVLLEELEQQQILDGDKKDKVLSTCPLCLTGFVMIFTIIYIALLLNCSLLYPPSPKPVPSFIARPRHDTGAPQTLEDLDVAMEVVIDSETGMPATDAVAAAKRRGVTDTIR------TYIAALRACGKGRAEPRDVLGVLERIRWAGVVEANEGVYAAAIRALRVC-------GSDGGGGXXXXXXXXXXXXGASEAARDLIEWD-GKRGSTG-ANLFLYSAAIKVCAEEDEIAAAKELFLEARKSDGASVDPPSDIAEAALAAATKAAREGLEKPDTPPRLNRGLEAVYNAMLEVCVAAGDGSLARDVLRWMKMERFEPAALSYTLAIKACCNRPSSLSHETTANPRRRSERTSSDSLPNITAPDMTSTRR----PAAQILDRGSESSGGGVNKR--GEWAAAQS---AAGAGSRSRPPLPPPRVLRDEDDGREWVV--------VPGGRRQSPFAEDQVDEGFARKVAAAKEKQFASKIFAARKDKA---------RVRERQQR-------GERGSQPDDVGKGNAGEPAPXXXXXXXXXXXXXXLQFPSPQAA----DGDATPAVKPSSGSTVVTQ-----GGVRFNFGAKKGVDWDKVWELASPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEPRTERTSVEPTPTRTVDVGGSIVAADSTAXXXXXVLPTTPTSIPQPNSGASTSVDVSSSGITILPTRTTDYGGAAAAAGTXXXXXXXXXXXXXXVEWERACALLSDMEVAQL--KPPVEAFEAVLGACIVAGKVGEALEVAQAMEGVGYRPDGGLLTRLTMSHADVLEREAQEIAAAAAGPPEDWG 3866
S + Y + AC GG+ GV+S + G + E +EE +AEAT+ AA A ++P L PA YA AA ALAD EWEWCLVLLEELEQ LD ++ D TG T + AP+T+ + V +D E G A A A +++ G Y AA+RACG+G A + V+GVLER+RW GV + E YAAA+ A G +G G A EAAR L+E + G+ G+ A+ FLY + LF+E R++ G + D +++A G P P R+N G+EAVY + L +C AAGDGSLARDVLRWMK+E F+ + +Y LAI+ACCN ++ ++ A P++ S T P TS +R P S GV ++ E A +S +A DDG V+ VPG + ++ V+ G + A R ER+ G R S P+ GN P P A GD P + +T GG A+ V + SP XXXXXXXXXX R+ PR + + XXXXX XXXXXXXXXXXXXX +WERA A+L DM A PP EAF AVLGAC AG+VGEALE+AQ M G G+ P L+TRL SHAD L+RE +E+ AAA P E+WG
Sbjct: 366 STDSYRLGMEACRRGGDARGVMSTFVIMEEEGFEADV----------------EEAEEEAASRSAEATQTAAAAEMLPSLSPAIYAAAANALADVGEWEWCLVLLEELEQ---LDAEQDDGA--------TGATATSTXXXXXXXXXXXXXX------XXXXXXXXXXEQEAPETV------LRVELD-ENGALAAPATATSQKEGSAPEAAXXXXXXAYTAAVRACGEGGAGVQTVVGVLERMRWVGV-DPGEDAYAAAVSAFXXXXXXGAREGEEGSGRGVLF---------AEEAARALVEHETGRDGAADWASPFLY----------------RMLFVEGRRAAGVATDDAAEVAXXXXXXXXXXXDSGTA-PKRPARVNAGVEAVYMSCLTMCAAAGDGSLARDVLRWMKLEGFQASEEAYMLAIEACCN--PAVPQDSPAAPQQPSS---------FTTPPATSRQRLPLPPPTFASGATSPEDLAGVRRKLFSEGEAPESEQHSAAXXXXXXXXXXXXXXXXXGDDGVAAVLRPATAGTSVPGVGDPASSVDEDVERGRVAEEMPAXXXXXXXXXXXXXXXXXXXXXXXXXXRKAERRPELEWVVIPGGRVSPPEFDEDGNEKNVTPPGTMGGAAWATGGAKAGPGGSGAVGFGGGDGAPFPREGEATTAAASRRDGDGGTTSPASARADVSRAGAVNVLSP----------------LAAAXXXXXXXXXXGRSSGQRLTPRVDPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------XXXXXXXXXXXXXXXXXXXXADWERARAILDDMTAADHLPPPPEEAFRAVLGACDSAGRVGEALEIAQVMVGAGFSPSISLMTRLIASHADELDRERREMEEAAAEPAEEWG 1167 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig519.12531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig519.12531.1 >prot_H-paniculata_contig519.12531.1 ID=prot_H-paniculata_contig519.12531.1|Name=mRNA_H-paniculata_contig519.12531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1297bp MRTENIRPGQLCFDAALQACAQTGAGTQALSILTEMTSLSPPAAGDGGDRback to top mRNA from alignment at H-paniculata_contig519:334..15683+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig519.12531.1 ID=mRNA_H-paniculata_contig519.12531.1|Name=mRNA_H-paniculata_contig519.12531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15350bp|location=Sequence derived from alignment at H-paniculata_contig519:334..15683+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig519:334..15683+ >mRNA_H-paniculata_contig519.12531.1 ID=mRNA_H-paniculata_contig519.12531.1|Name=mRNA_H-paniculata_contig519.12531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7782bp|location=Sequence derived from alignment at H-paniculata_contig519:334..15683+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |