mRNA_H-paniculata_contig5188.12528.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5188.12528.1
Unique NamemRNA_H-paniculata_contig5188.12528.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5188.12528.1 vs. uniprot
Match: D7G5U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U1_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 5.930e-39
Identity = 79/166 (47.59%), Postives = 108/166 (65.06%), Query Frame = 3 
Query:    3 KGVGCFWVGMTAWMTGLMGTCVSQKKNSGGPPTAVFFVLAMLCVLAATLGLLLVDGRAYRHVRASDGNCFDVSSTCTDGDTCAKLDCVCWKPDGSTTCDGGTSKRYCFNIKDNLSCNDIRNTEGILLASSVLLAAIDILAISSVLIASATICCCRYNITLQRGNGI 500
            K  G FWVG  A   G+ GTCVS  ++SGG PTA FF  + +C++AATL L+LVDG  Y  V++++GNC D SS C D D C   DCVCW+PDGST C  GTS R C   + + SC++I ++E +L AS+ L   I  L   ++L+ SAT C C+Y + L+R +G+
Sbjct:   73 KYAGGFWVGFMALAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVQSTEGNCVDTSS-CLD-DICGGYDCVCWEPDGSTDCFDGTSTRTCLQYQGS-SCDEIEDSESLLAASTFLHIIIMALVAIAMLVTSATCCGCKYTVLLRREDGV 235
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BLAST of mRNA_H-paniculata_contig5188.12528.1 vs. uniprot
Match: A0A6H5KT21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT21_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.070e-27
Identity = 57/111 (51.35%), Postives = 73/111 (65.77%), Query Frame = 3 
Query:   36 AWMTGLMGTCVSQKKNSGGPPTAVFFVLAMLCVLAATLGLLLVDGRAYRHVRASDGNCFDVSSTCTDGDTCAKLDCVCWKPDGSTTCDGGTSKRYCFNIKDNLSCNDIRNT 368
            A+  G+ GTCVS  ++SGG PTA FF  + +C++AATL L+LVDG  Y  V +++GNC + SS C D D C   DCVCW+PDGST C  GTS R C   +   SC+DI  T
Sbjct:    2 AFAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVHSTEGNCVETSS-CLD-DICGGYDCVCWEPDGSTDCFDGTSTRKCLQYQGG-SCDDIEVT 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5188.12528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5U1_ECTSI5.930e-3947.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT21_9PHAE3.070e-2751.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5188contigH-paniculata_contig5188:5489..10834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size896
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5188.12528.1prot_H-paniculata_contig5188.12528.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5188 5518..10468 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930513.2094653-UTR-H-paniculata_contig5188:5488..55171622930513.2094653-UTR-H-paniculata_contig5188:5488..5517Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5188 5489..5517 +
1691481326.0704381-UTR-H-paniculata_contig5188:5488..55171691481326.0704381-UTR-H-paniculata_contig5188:5488..5517Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5188 5489..5517 +
1622930513.280099-UTR-H-paniculata_contig5188:10468..108341622930513.280099-UTR-H-paniculata_contig5188:10468..10834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5188 10469..10834 +
1691481326.1164198-UTR-H-paniculata_contig5188:10468..108341691481326.1164198-UTR-H-paniculata_contig5188:10468..10834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5188 10469..10834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930513.2240863-CDS-H-paniculata_contig5188:5517..56621622930513.2240863-CDS-H-paniculata_contig5188:5517..5662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5188 5518..5662 +
1691481326.0793417-CDS-H-paniculata_contig5188:5517..56621691481326.0793417-CDS-H-paniculata_contig5188:5517..5662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5188 5518..5662 +
1622930513.237917-CDS-H-paniculata_contig5188:6570..66431622930513.237917-CDS-H-paniculata_contig5188:6570..6643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5188 6571..6643 +
1691481326.0876365-CDS-H-paniculata_contig5188:6570..66431691481326.0876365-CDS-H-paniculata_contig5188:6570..6643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5188 6571..6643 +
1622930513.2509005-CDS-H-paniculata_contig5188:7132..72471622930513.2509005-CDS-H-paniculata_contig5188:7132..7247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5188 7133..7247 +
1691481326.0965416-CDS-H-paniculata_contig5188:7132..72471691481326.0965416-CDS-H-paniculata_contig5188:7132..7247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5188 7133..7247 +
1622930513.266248-CDS-H-paniculata_contig5188:10300..104681622930513.266248-CDS-H-paniculata_contig5188:10300..10468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5188 10301..10468 +
1691481326.1057463-CDS-H-paniculata_contig5188:10300..104681691481326.1057463-CDS-H-paniculata_contig5188:10300..10468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5188 10301..10468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5188.12528.1

>prot_H-paniculata_contig5188.12528.1 ID=prot_H-paniculata_contig5188.12528.1|Name=mRNA_H-paniculata_contig5188.12528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MTAWMTGLMGTCVSQKKNSGGPPTAVFFVLAMLCVLAATLGLLLVDGRAY
RHVRASDGNCFDVSSTCTDGDTCAKLDCVCWKPDGSTTCDGGTSKRYCFN
IKDNLSCNDIRNTEGILLASSVLLAAIDILAISSVLIASATICCCRYNIT
LQRGNGIGSHVPPAAR*
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mRNA from alignment at H-paniculata_contig5188:5489..10834+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5188.12528.1 ID=mRNA_H-paniculata_contig5188.12528.1|Name=mRNA_H-paniculata_contig5188.12528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5346bp|location=Sequence derived from alignment at H-paniculata_contig5188:5489..10834+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAAGGGGTGGGGTGTTTCTGGGTTGGGATGACCGCGTGGATGACCGGG
CTGATGGGCACGTGCGTGTCGCAGAAGAAAAACTCGGGCGGGCCTCCCAC
CGCCGTGTTCTTCGTGCTCGCGATGCTGTGTGTGCTCGCTGCGACGTTGG
GACTGCTGCTGGTTGACGGGAGGGGTGCGTACTCTTCAGCGATAGAGACA
CAACCTCTCACTAACCACCCCTACTGCTTTGAAGTATTGGTCTCCTTAAC
AGTCTCGTTTCAAGCGGCATATACCGCGTTAGATAGGGCATATATCTCTC
CAGTGTCCCGCCTAGAGGGTCGGAAAGAATAGACGTTTTGACACATGGAC
TCATCAGCACACGGAGAGCTCGTTCGCTACTGAACTTTGTGACCTGAGCA
TGTTAACTCACGGCTGCTGTCGTCATTTTTCATACACCCCAATGTGCGCA
GGTCAGGTGTGCGGTGAAGCAGGTCGTGCCTTGTTTTTCTCGACGTATCG
TAAGACGAGTTTTTTCGCTTTTTACTTTTTGCAACACGCGGTGTCTTGGA
CGCGGAATGTGAGGGGGGGTATAGCACATGCTGTGATGAATCATCCCTCC
CCCGAGTGTCTCGGCAGCTGAATAACAGCGAGCACGACGGCCTTTTGAAC
CAATTCGCCGGGAGCGTTGCGAACCCGTCATAGTTGCAAGCTGTATTCTC
CGCCTTGTCGTGGATCCTACGGGAGGAAAAGCAACCCGGGTATCCGGGGG
GGCTCACAGGGGAAGTGCCCTGTAACGTGTATCTGGAAGTTGAGAACGGC
TACTTCGCATGGTACTTATTCTCCAAATCCCCTTCTCTAATGGGAGTTTG
GATGTCCAGCGCGTTCTATTGAGCAAGTTATCTAAACTGTTACGGGGCCG
AGCAAGATAGTTTACGCGGATCTTGTGAGGGTCTTTTGGAGAAATGCCAC
TTAGGCCCTAATGCCACGTTATCCTCACACATCGAAGAAAAATGGATAAC
TGGCAACTGCTTGTTTTTTTCTCCCGCTGTCCTTTCGTTTCTTGTTGCTC
GGGGCCGATTATTATCGTGTTTGGCCTGGCAGCATACCGACACGTGAGAG
CCAGCGACGGAAACTGCTTCGACGTTTCCTCCACTTGTACGGACGGCGAC
ACCTGGTGAGCTTTGCAAGATCTTTCGCTCTTGATTCCGTGTACTGCATC
TTCTTGCACTGAATGATGACCTTGCTGCAGTTTGTGATTTTGTCGAGAGA
ATAGTGTCCTCATATTCGGGATATTATCCTGTGTATCACCTCTAGTTGTG
TTATTTCTCTCCACAGCTTATCCTCCTGACTTGTCCTCCTGACACGTCAA
CGGGACTCTGAAGGTGCGCTTTACGCGAACTGCGCAAGGCCGGGACTCGA
AACCCCACACACCCTAGGGTCATTTTTGTCATGCTCAAAAGATTGATGCT
CTCCATGCCCCATGGATTATAGTCGTACTCCAGTACATTTTTGGACTCGC
CTGCGTGACTCGTCTCGCATTGATCTTTCAAGTTATCTCATTCCTATAGC
ACTACATGAGCAGCGTAGTATGGCCGAAATCTGGTGTGTTGGCAGTTCCC
GTTCTCGCCGTGGTAATTGGATCCGATGTGTTTTTTGCGACCAGTGCGAA
GTTGGACTGTGTGTGCTGGAAGCCGGATGGGTCTACAACTTGCGACGGCG
GGACCTCGAAACGATATTGCTTCAATATCAAGGACAACCTCAGCTGCAAC
GACATCAGGGTGAGGCCTTTTGTTCGAGTCCTCCTGTAATGTGCAGCTGG
TGACAAAGAACGCTCTTCATGAGGGCAAGCGCGTTTTTTTCTGTTTCGTT
GAAGATAAGAGGTAATGGGGGTTTAATAGTTACCCTAATACATGGACGAT
GACGCCTACTGCGTGTTAATAGCTGTCAAGCTATGGCACATCCTGAACAG
TGAAAAAAAGACAATCGATTCCACACTGTCACAAGTCCGCAGACAATATG
CCCCGAGACCCCAAGGAGGAGGGCGAAAACTAGACAAGAAAATAGGGTAA
ATTACGTAGGTCGTCTGGCCCATCCGTGTGTGTGTATAGTACTATGGCGT
ACTCCAACACAGAGGACAATACCATCTGTCATCATCCATTATTGTCCTAC
CTACACCGCTACAATATACAGACTCCTGTAACGAACACGGTATACCTTTG
CACTGGGAAAACAGCTATTGCAGAAATACCGCGGGACGTGTTAATGTTCG
GAAGAATTTGAGCGTGGACTTCTCACATTATTACGAGTGCTTCTCCAACT
CGACGGTTCCTTGTCTGGATGATGACCTATACATAGGCATTCTTCCCTTT
TAATCCCCCCTTGATCGGGTTTTGAGAGAAGTTGTATACCATCTTCACCG
TGTTTCTATGTACTGGAATGTGCGAATCTCAGAACTTCATGCGCTGGACA
ATATGCTCTCTCCCTCGCGAATCGTAGCCCTAACATATTTAAAAACCTGT
TCGAGCTATACCGGTAGTCTCACGCGTCTTATAAAATACAGCACCCTACA
ACATTGATTTACTTTCAAGTGCTGTCCCCAGCAGCTAGTACATTACAGTA
GCGCGTGGTTGACATGCGGTTTCCGAAGCTTTTCTAAGAGCTGTAGACGT
TATCTTCTTCGCTGTTTCCACCCTGGATAATGACACATTGCATCAGGGTG
ATGTCATGTGTGATGGTGTTCTATACAATGTAACTGAATGCCAGATAGTG
TCATGCAACACCTTGGGCATTCTAAACACATACACACGCTATTCATCTGA
CGTTGATGGATAGGCGGCTGATGTACGGCGTGTTTACTCGAGGGACAGAA
AACGGGCATTGCTTTCCCTCAGAGCAATTTGGACAAAGCAGCGGCCCAAG
CTCTGTCTCTCTCGCAATGGTGGTTGCAAAGTAGTAAGGTGGCCTCAGTC
ACGTACCAACTTGGTAGCTGTTATCACATAGCCTCTGAATGGTGGGATAA
AATCGACCGTTACGTGTGTATTGGTTTGTTCTTGCTTTCTGCGGGCGCTC
CGAGGTGTCAAGGACCAGAGGTAAAAACGACTATTTAAGATATATACCCC
CCAATGAAGGTACTTTTTTTTTTTTCCTGTAACCTTGCGAAAAAATGGTC
ATTTTCTTTTTTGTTTTGTTTTAATCTACCTGTGTATAAAAGCAAGACAC
CTCGTTTGAGCTACTCTGCATGCCAAACGGTTCTACTTATGTCGTGACTC
GGTGATCGTACGACCAATGCGTGCTTTTTGCCTGGAGAAGAAAATGTGCA
TTTATTCCATGGAGTGCGCTATGGATGGCATGCGACGCCGCCTTTTGGGG
AGTTGAAGTTGTGTGGAGACATTTGTTGCAATATTTTTGAACAAATCACA
GTATGTGACTCTGTCGGTCAAGCGACGAGCCCTTTTTTCCAGTCGTCGCA
CCGACAGTGTATGTGTAGATTTACACATGGTGGTTTTGGGGGCAGAAATG
AATGCAGTTTTTGTATTATAGGGCAAGGCGAGAATACCTTAGATTATCCA
AAGCGAGTGTCAGGAGTGTGCGTTGTGATGGACTCAGCTTTATTTCGAAT
ATTGTATGTCGCCCCAAGCAGGATGAAAGACAATAGTCCAAGAATATTTT
CGACGAAACAAACTGCTTAACGTGAGTAGGGCGGCTCAAACATCGCTTTG
GTTCCACGAGAGATTTTCGCATCAGACATGGGTACTGTTTTGATGGGCTG
TGATTCAGCTTAAATTTCGCATGCCGTCTCCCAATAGCACGAATGAAATC
TTCAAAACACATGGTCGACAAAAACAGATGTTTTAGTGGAGCACGGCGTG
ATCGAATGCTTCCGGAGTACGCTAATTGTTTCGAAATTACGGGGACGCGT
TGATTTCGTCTCCTATTTTTTTAGTAATTTTTCAGTCCGTGACATGATAT
TAGCCCTTTCAGCAACGTTTGTGCCAAATTACAGGATTTGGAGTGTCTCA
AGTCGCGCGCATTTGACTATTTGGTGAGGTGTATCTTAAGTGGTCGGGTC
GTTTTTTGGTGTCTGTTTTTTCTTATCACTGGCAAGTATTGTTGTATTCA
CTGGCTCTCCTGGCATGAGTTCGTATCCGTTTCACACTTTCCGAGGCTGG
GATGATAGATGATGGAAATATGTATCCGTTGATTCCCCGTTTATTCTCCT
ACGCTCCAACTTTCCAACACAACGTCCTTTTGCGTATGAGGTGCCTTATG
TGTATCTTAATCGGAATTTTTACCTCCATGTATTTGTTAGCTTATTGCGA
TGTTTGCTATACCTATGTGGGATAAGTAGTACTTGGTATGCCAGCTATTT
TTTTTCGTCTGAGTTATTTACATGCTCCCTCAGATATATATGACTTGCAC
TAAAAAAAAGGTTATATAGCTCTACTTGTCCATTAGGTTTCACACTACTA
CTGATCAGTTAATCTGTTTATTTTCACGCCCGGTATCCATTCCGGGTTCC
ATGTCGCGAGAAGGAGAAAATATTGATAATTTCTAGTATTTTGTATCTTG
AAAAAAAAAAACGTGGTTGACATTGTCCCAATTCCTCGTATAGTGTCCAC
GCCCCCCCGACAAACACGCCACCGCCGCCACGATAACCACGATAACCACC
ACCATTACCACTACCACGATTTACCTCCCCCTGTGCACCTCTCTGAATAA
TCACTCCTGTGGGGATAATGTTCGGCTCCCTCGAGGACGCGTGGTCAGAG
GATGGAATTGCACGTCATGCAAACATGTGAGAACCACCCCCCTCCCCCCT
GGATGTCTTCAGAATACAGAGGGGATACTTCTGGCGTCATCGGTTCTCTT
GGCAGCGATCGATATCCTGGCGATTTCTTCCGTTTTGATCGCGTCCGCAA
CCATCTGCTGCTGTCGATACAACATCACTTTGCAACGAGGTAACGGTATC
GGGTCGCACGTCCCGCCTGCCGCCCGGTAGGAGGTAAGGCGAACAACGGT
TGCGGTGGAAGCTGACATAGTGTTCCACGTGTGCTCCTCAAGAGGTTTAC
CTGCGAACAATATCTGGACGTGCCGTTGACTATGACTATACAAATTCAAG
ATAGTATACATTGTAATACGGTGGAGTGTAGATTTTATTGAGAAAAACCC
TCTGCAATTCCGTTTTTGTTGAGCTTGTTTGAGTTTTCCCCTGGTGCTGT
AATTTTTAGATGTTTGCGATTGTTTACTGTTTTGAAAAGACACGCCGGCC
GTTCAGGCAGGGTATTGCAAGCCAGGCTGCGGTCTAAACCTAATAACTCC
CAAATGACCCAGGACAGTAGATAGATTTGGCTGCACATGCGGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig5188:5489..10834+

>mRNA_H-paniculata_contig5188.12528.1 ID=mRNA_H-paniculata_contig5188.12528.1|Name=mRNA_H-paniculata_contig5188.12528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig5188:5489..10834+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGCGTGGATGACCGGGCTGATGGGCACGTGCGTGTCGCAGAAGAA
AAACTCGGGCGGGCCTCCCACCGCCGTGTTCTTCGTGCTCGCGATGCTGT
GTGTGCTCGCTGCGACGTTGGGACTGCTGCTGGTTGACGGGAGGGATGAC
CGCGTGGATGACCGGGCTGATGGGCACGTGCGTGTCGCAGAAGAAAAACT
CGGGCGGGCCTCCCACCGCCGTGTTCTTCGTGCTCGCGATGCTGTGTGTG
CTCGCTGCGACGTTGGGACTGCTGCTGGTTGACGGGAGGGCATACCGACA
CGTGAGAGCCAGCGACGGAAACTGCTTCGACGTTTCCTCCACTTGTACGG
ACGGCGACACCTGCATACCGACACGTGAGAGCCAGCGACGGAAACTGCTT
CGACGTTTCCTCCACTTGTACGGACGGCGACACCTGTGCGAAGTTGGACT
GTGTGTGCTGGAAGCCGGATGGGTCTACAACTTGCGACGGCGGGACCTCG
AAACGATATTGCTTCAATATCAAGGACAACCTCAGCTGCAACGACATCAG
GTGCGAAGTTGGACTGTGTGTGCTGGAAGCCGGATGGGTCTACAACTTGC
GACGGCGGGACCTCGAAACGATATTGCTTCAATATCAAGGACAACCTCAG
CTGCAACGACATCAGGAATACAGAGGGGATACTTCTGGCGTCATCGGTTC
TCTTGGCAGCGATCGATATCCTGGCGATTTCTTCCGTTTTGATCGCGTCC
GCAACCATCTGCTGCTGTCGATACAACATCACTTTGCAACGAGGTAACGG
TATCGGGTCGCACGTCCCGCCTGCCGCCCGGTAGAATACAGAGGGGATAC
TTCTGGCGTCATCGGTTCTCTTGGCAGCGATCGATATCCTGGCGATTTCT
TCCGTTTTGATCGCGTCCGCAACCATCTGCTGCTGTCGATACAACATCAC
TTTGCAACGAGGTAACGGTATCGGGTCGCACGTCCCGCCTGCCGCCCGGT
AG
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