prot_H-paniculata_contig5188.12528.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig5188.12528.1
Unique Name	prot_H-paniculata_contig5188.12528.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	167

Homology

[Close]

BLAST of mRNA_H-paniculata_contig5188.12528.1 vs. uniprot
Match: D7G5U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U1_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 5.180e-37
Identity = 73/155 (47.10%), Postives = 102/155 (65.81%), Query Frame = 0

Query:    3 AWMTGLMGTCVSQKKNSGGPPTAVFFVLAMLCVLAATLGLLLVDGRAYRHVRASDGNCFDVSSTCTDGDTCAKLDCVCWKPDGSTTCDGGTSKRYCFNIKDNLSCNDIRNTEGILLASSVLLAAIDILAISSVLIASATICCCRYNITLQRGNGI 157
            A   G+ GTCVS  ++SGG PTA FF  + +C++AATL L+LVDG  Y  V++++GNC D SS C D D C   DCVCW+PDGST C  GTS R C   + + SC++I ++E +L AS+ L   I  L   ++L+ SAT C C+Y + L+R +G+
Sbjct:   84 ALAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVQSTEGNCVDTSS-CLD-DICGGYDCVCWEPDGSTDCFDGTSTRTCLQYQGS-SCDEIEDSESLLAASTFLHIIIMALVAIAMLVTSATCCGCKYTVLLRREDGV 235

[Close]

BLAST of mRNA_H-paniculata_contig5188.12528.1 vs. uniprot
Match: A0A6H5KT21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT21_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.000e-29
Identity = 57/111 (51.35%), Postives = 73/111 (65.77%), Query Frame = 0

Query:    3 AWMTGLMGTCVSQKKNSGGPPTAVFFVLAMLCVLAATLGLLLVDGRAYRHVRASDGNCFDVSSTCTDGDTCAKLDCVCWKPDGSTTCDGGTSKRYCFNIKDNLSCNDIRNT 113
            A+  G+ GTCVS  ++SGG PTA FF  + +C++AATL L+LVDG  Y  V +++GNC + SS C D D C   DCVCW+PDGST C  GTS R C   +   SC+DI  T
Sbjct:    2 AFAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVHSTEGNCVETSS-CLD-DICGGYDCVCWEPDGSTDCFDGTSTRKCLQYQGG-SCDDIEVT 109

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig5188.12528.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig5188.12528.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G5U1_ECTSI	5.180e-37	47.10	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KT21_9PHAE	4.000e-29	51.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 46..115
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 139..166
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 116..138
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 25..45
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..24
None	No IPR available	TMHMM	TMhelix		coord: 116..138
None	No IPR available	TMHMM	TMhelix		coord: 23..45

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig5188	contig	H-paniculata_contig5188:5518..10468 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig5188.12528.1	mRNA_H-paniculata_contig5188.12528.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig5188 5489..10834 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig5188.12528.1 ID=prot_H-paniculata_contig5188.12528.1|Name=mRNA_H-paniculata_contig5188.12528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MTAWMTGLMGTCVSQKKNSGGPPTAVFFVLAMLCVLAATLGLLLVDGRAY
RHVRASDGNCFDVSSTCTDGDTCAKLDCVCWKPDGSTTCDGGTSKRYCFN
IKDNLSCNDIRNTEGILLASSVLLAAIDILAISSVLIASATICCCRYNIT
LQRGNGIGSHVPPAAR*