mRNA_H-paniculata_contig51810.12517.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51810.12517.1
Unique NamemRNA_H-paniculata_contig51810.12517.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig51810.12517.1 vs. uniprot
Match: D7G4C2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4C2_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 4.880e-28
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    4 FFFLMALCACCSSTFNNGFWGLKSLLWTVGLIACIFLSNNIFDTDGYVWVARVGAFIFIIMQQIVLIDLAY 216
            FF LMALCACCS  FN+GFWG K +LW V +IA +F++N++FDT GYVWVAR+GAFIF IMQQIVLIDLAY
Sbjct:  107 FFALMALCACCSPVFNHGFWGFKFMLWAVLMIATLFITNDVFDTSGYVWVARIGAFIFTIMQQIVLIDLAY 177
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BLAST of mRNA_H-paniculata_contig51810.12517.1 vs. uniprot
Match: A0A836CG76_9STRA (Serine incorporator/TMS membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG76_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.380e-18
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    4 FFFLMALCACCSSTFNNGFWGLKSLLWTVGLIACIFLSNNIFDTDGYVWVARVGAFIFIIMQQIVLIDLAY 216
            FFF+M + +   S FNN  W LK   W+V +IA +F+SN +FD  GYVW AR GAF+FII+QQIVLID+AY
Sbjct:  105 FFFVMMVGSFTGSLFNNRCWALKLTFWSVMIIASVFISNAVFDDHGYVWAARFGAFLFIILQQIVLIDIAY 175
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BLAST of mRNA_H-paniculata_contig51810.12517.1 vs. uniprot
Match: A0A6S8BNU5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8BNU5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.050e-12
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    4 FFFLMALCACCSSTFNNGFWGLKSLLWTVGLIACIFLSNNIFDTDGYVWVARVGAFIFIIMQQIVLIDLAY 216
            FFF++A+        ++ FWG K   W + L+   FL N IF   GY+WVAR+G+F+F+I+QQI+LIDLAY
Sbjct:   96 FFFVLAIVGRVEPALHDSFWGCKFWGWILALVVAWFLPNPIFF--GYIWVARIGSFLFVILQQILLIDLAY 164
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BLAST of mRNA_H-paniculata_contig51810.12517.1 vs. uniprot
Match: A0A7S2S0K9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0K9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 9.610e-10
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:    7 FFLMALCACC-SSTFNNGFWGLKSLLWTVGLIACIFLSNNIFDTDGYVWVARVGAFIFIIMQQIVLIDLAY 216
            FFL   C C      ++  W +K   W   +   IF  N +FD  GYVW AR+GAF F+I+QQI+L+D AY
Sbjct:  159 FFLGMACVCAFEPRLHDEGWDIKFFAWLGIVTLFIFAPNRVFDDHGYVWPARIGAFAFLILQQIILVDFAY 229
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BLAST of mRNA_H-paniculata_contig51810.12517.1 vs. uniprot
Match: A0A7S0G8L6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G8L6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.310e-9
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:    4 FFFLMALCACCSSTFNNGFWGLKSLLWTVGLIACIFLSNNIFDTDGYVWVARVGAFIFIIMQQIVLIDLAY 216
            FF L++L A C+ +FN   W  K +L++  +   IF+ N     D YV  AR+GA IFI++QQIVLIDLAY
Sbjct:  126 FFILLSLIAMCNPSFNRKSWPAKYILYSCLVFLSIFVPNRPLFLDIYVPFARIGASIFIVIQQIVLIDLAY 196
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BLAST of mRNA_H-paniculata_contig51810.12517.1 vs. uniprot
Match: A0A7S2HQ00_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQ00_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.090e-9
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    4 FFFLMALCACCSSTFNNGFWGLKSLLWTVGLIACIFLSNNIFDTDGYVWVARVGAFIFIIMQQIVLIDLAY 216
            FF LMA+        ++  W LKS  W +  +  +FL N++  T G++W ARVGAF+F+++QQ++LID  Y
Sbjct:   65 FFALMAMTTAAVPESHDWGWCLKSTFWFLLCVGSVFLPNDVM-TSGFIWFARVGAFVFLVLQQVILIDFGY 134
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BLAST of mRNA_H-paniculata_contig51810.12517.1 vs. uniprot
Match: A0A7S2RGK7_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGK7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.120e-9
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    4 FFFLMALCACCSSTFNNGFWGLKSLLWTVGLIACIFLSNNIFDTDGYVWVARVGAFIFIIMQQIVLIDLAY 216
            FF +MA+        ++  W LK +++ + L+A ++  + IFD  GYVW ARV AFIF+I+QQI+LID AY
Sbjct:  110 FFAVMAIIGKLMPKLHDQGWDLKFIVFMLVLLALMWAPSTIFDEHGYVWFARVFAFIFLILQQIILIDFAY 180
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BLAST of mRNA_H-paniculata_contig51810.12517.1 vs. uniprot
Match: A0A8J2WJ15_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WJ15_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.910e-9
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    1 AFFFLM-ALCACCSSTFNNGFWGLKSLLWTVGLIACIFLSNNIFDTDGYVWVARVGAFIFIIMQQIVLIDLAY 216
            AFFF+  A  +    +F++  W  K   W + L   + + N +F  +GYVWVAR G FIF+I+QQI+LIDLAY
Sbjct:   95 AFFFISNATVSWLDPSFHDRRWVAKLFGWILLLCISLLIPNPVFGLEGYVWVARFGGFIFVILQQILLIDLAY 167
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BLAST of mRNA_H-paniculata_contig51810.12517.1 vs. uniprot
Match: A0A7S2FS67_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS67_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.920e-8
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    4 FFFLMALCACCSSTFNNGFWGLKSLLWTVGLIACIFLSNNIFDTDGYVWVARVGAFIFIIMQQIVLIDLAY 216
            FF  MA+ A      ++  W +K   + + LI   +  +NIFD  GY W ARVGAFIFI++QQI+L+D  Y
Sbjct:  182 FFGTMAILAGFKPAIHDLGWDVKLSFYAILLIGITWAPSNIFDDHGYAWFARVGAFIFIVLQQIILLDGGY 252
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BLAST of mRNA_H-paniculata_contig51810.12517.1 vs. uniprot
Match: A0A7S4QFA3_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QFA3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.690e-8
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    4 FFFLMALCACCSSTFNNGFWGLKSLLWTVGLIACIFLSNNIFDTDGYVWVARVGAFIFIIMQQIVLIDLAY 216
            FF   AL   C+   N   W  K  ++ + + A IF+ N+ F    Y+W++R GA IF+I++QI+LID+AY
Sbjct:  186 FFLFAALSTKCNPALNREAWPAKYAIYILTVFAFIFIPNHPFFNGIYLWISRFGAMIFVIIEQIILIDVAY 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51810.12517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G4C2_ECTSI4.880e-2873.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CG76_9STRA7.380e-1857.75Serine incorporator/TMS membrane protein n=1 Tax=T... [more]
A0A6S8BNU5_9STRA4.050e-1247.89Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2S0K9_9STRA9.610e-1043.66Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0G8L6_9STRA1.310e-947.89Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2HQ00_9STRA2.090e-940.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RGK7_9STRA2.120e-945.07Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A8J2WJ15_9STRA2.910e-945.21Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2FS67_9STRA1.920e-843.66Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4QFA3_9STRA6.690e-839.44Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51810contigH-paniculata_contig51810:683..898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue5.1e-22
Seed eggNOG ortholog2880.D7G4C2
Preferred nameSERINC3
Hectar predicted targeting categorysignal anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002252,GO:0002376,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006575,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006658,GO:0006665,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0006950,GO:0006952,GO:0006955,GO:0007272,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008324,GO:0008366,GO:0008509,GO:0008514,GO:0008610,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009597,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015194,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015825,GO:0015849,GO:0016020,GO:0016021,GO:0016053,GO:0019637,GO:0019752,GO:0019899,GO:0022857,GO:0022889,GO:0023051,GO:0023056,GO:0030148,GO:0030674,GO:0031090,GO:0031224,GO:0031984,GO:0032329,GO:0032501,GO:0032502,GO:0034220,GO:0042175,GO:0042552,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044085,GO:0044091,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046394,GO:0046467,GO:0046486,GO:0046942,GO:0046943,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051338,GO:0051347,GO:0051607,GO:0051704,GO:0051707,GO:0055085,GO:0060090,GO:0065007,GO:0065009,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080134,GO:0080135,GO:0098542,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098827,GO:0098852,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902235,GO:1902237,GO:1902475,GO:1902531,GO:1902533,GO:1903825,GO:1904217,GO:1904219,GO:1904220,GO:1904222,GO:1905039,GO:1905897,GO:1905898,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.serine transport
EggNOG OGsKOG2592@1,KOG2592@2759
Ec32 ortholog descriptionSerine incorporator/TMS membrane protein
Ec32 orthologEc-02_002170.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size216
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930511.9613352-CDS-H-paniculata_contig51810:682..8831622930511.9613352-CDS-H-paniculata_contig51810:682..883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51810 683..883 -
1691481325.646301-CDS-H-paniculata_contig51810:682..8831691481325.646301-CDS-H-paniculata_contig51810:682..883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51810 683..883 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930511.9764886-UTR-H-paniculata_contig51810:883..8981622930511.9764886-UTR-H-paniculata_contig51810:883..898Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51810 884..898 -
1691481325.6597-UTR-H-paniculata_contig51810:883..8981691481325.6597-UTR-H-paniculata_contig51810:883..898Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51810 884..898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51810.12517.1prot_H-paniculata_contig51810.12517.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51810 683..883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51810.12517.1

>prot_H-paniculata_contig51810.12517.1 ID=prot_H-paniculata_contig51810.12517.1|Name=mRNA_H-paniculata_contig51810.12517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MALCACCSSTFNNGFWGLKSLLWTVGLIACIFLSNNIFDTDGYVWVARVG
AFIFIIMQQIVLIDLAY
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mRNA from alignment at H-paniculata_contig51810:683..898-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51810.12517.1 ID=mRNA_H-paniculata_contig51810.12517.1|Name=mRNA_H-paniculata_contig51810.12517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig51810:683..898- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTTTTCTTCCTGATGGCGCTGTGCGCATGTTGTTCTTCGACCTTCAA
TAATGGCTTCTGGGGGCTGAAGTCTCTGCTATGGACTGTGGGCCTGATCG
CTTGCATCTTCTTGTCCAACAACATCTTCGACACGGATGGCTACGTGTGG
GTCGCGCGAGTCGGAGCGTTCATATTCATCATCATGCAGCAGATCGTCCT
CATCGACCTTGCCTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig51810:683..898-

>mRNA_H-paniculata_contig51810.12517.1 ID=mRNA_H-paniculata_contig51810.12517.1|Name=mRNA_H-paniculata_contig51810.12517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig51810:683..898- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCTGTGCGCATGTTGTTCTTCGACCTTCAATAATGGCTTCTGGGG
GCTGAAGTCTCTGCTATGGACTGTGGGCCTGATCGCTTGCATCTTCTTGT
CCAACAACATCTTCGACACGGATGGCTACGTGTGGGTCGCGCGAGTCGGA
GCGTTCATATTCATCATCATGCAGCAGATCGTCCTCATCGACCTTGCCTA
TATGGCGCTGTGCGCATGTTGTTCTTCGACCTTCAATAATGGCTTCTGGG
GGCTGAAGTCTCTGCTATGGACTGTGGGCCTGATCGCTTGCATCTTCTTG
TCCAACAACATCTTCGACACGGATGGCTACGTGTGGGTCGCGCGAGTCGG
AGCGTTCATATTCATCATCATGCAGCAGATCGTCCTCATCGACCTTGCCT
AT
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