mRNA_H-paniculata_contig51753.12509.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51753.12509.1
Unique NamemRNA_H-paniculata_contig51753.12509.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig51753.12509.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 185 bits (470), Expect = 4.360e-50
Identity = 106/250 (42.40%), Postives = 141/250 (56.40%), Query Frame = 1
Query:    1 WRAAMEEERGALVDNGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGKDFLETSAPVACMSTLRTVFSLAAEHDFELKGMDVDAAYLNAPVEEELLVKLPPEFSLFSRGIPFVRRLRKSLYSLKQSGRNWNNTLDDFLDGIELDRSTTDSCLYFPATMGERQ--TFWWP------------YEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQDSYIREVLKR 708
            W+ AM+EE   + + GT+  ED   LPAGR  I  KW+F +K  EDG+++RYKARLVAQG+SQ+ G D+ ET APV  + ++R    +AA  D E+  MDV  AYLN  +EEE+ ++ P  +     G   V RLRK+LY LKQSGR WN   D  L  I   +   D C+Y     G     T W               E K  +   F +KDLG   +++GIE++RDR NGTI++SQ  YI  VL R
Sbjct:  894 WKKAMDEEMSVIKEMGTYTKED---LPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYD---DGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTIITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTR 1137          
BLAST of mRNA_H-paniculata_contig51753.12509.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.630e-47
Identity = 103/237 (43.46%), Postives = 141/237 (59.49%), Query Frame = 1
Query:    4 RAAMEEERGALVDNGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGKDFLETSAPVACMSTLRTVFSLAAEHDFELKGMDVDAAYLNAPVEEELLVKLPPEFSLF-SRGIPFVRRLRKSLYSLKQSGRNWNNTLDDFLDGIELDRSTTDSCLYFP-ATMGERQTFWWPYEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQDSYIREVLKR 708
            R A + E  A + NGTWE   L  LP G + I + W+   K  ++G + R KAR +A+G+SQ  G D+L T APVA ++T+R V +LA   D EL  MDVD AYL + +EE++ +K PP +  + S G   V RLRKSLY LKQSGRNW+  +D +  G     S+TD CLY    + GE +       FKH IS+ F MKDL  L  +LG+ ++RDR    + ISQ +YI  +L +
Sbjct:  248 RKARDAEYQAHMKNGTWE---LTPLPKGERCISSGWVEADKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSTDPCLYVKFGSSGEMEMV---NSFKHAISREFSMKDLKELHWILGMAIKRDREKRVMEISQTAYIDMMLAK 478          
BLAST of mRNA_H-paniculata_contig51753.12509.1 vs. uniprot
Match: A0A165UZ38_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165UZ38_9AGAM)

HSP 1 Score: 168 bits (426), Expect = 2.280e-47
Identity = 99/251 (39.44%), Postives = 151/251 (60.16%), Query Frame = 1
Query:    1 WRAAMEEERGALVDNGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGKDFLETSAPVACMSTLRTVFSLAAEHDFELKGMDVDAAYLNAPVEEELLVKLPPEFSLFSRGIPFVRRLRKSLYSLKQSGRNWNNTLDDFL-DGIELDRSTT----------DSCLYFPATMGER----QTFWWPYEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQDSYIREVLKR 708
            W  A ++E  +LV+NGT+E   L   P GRKAI ++W+FK K   DGS+ RYK RLVA+GFSQ  G D+ ET AP    ++LR + +LAA  D EL+ +D+  AYLN  +EE++ ++ P  F    +G  +V RL+K LY LKQ+GR+W+  L++ L + +   R T           D C+  P  + +     ++     + K ++ Q F+++DLG  S +LG+E++RDR + T+TISQ  YI ++L R
Sbjct:   57 WLKAAQDEIQSLVENGTFE---LVECPPGRKAIGSRWVFKVKRNADGSIERYKGRLVAKGFSQRPGFDYNETFAPTPKWASLRAILALAALEDLELESVDISTAYLNGTLEEDVYMRQPKGFE--QKGPEWVWRLQKLLYGLKQAGRHWHEKLNEVLTEKLGFSRLTCEHSVWVYGKDDVCIIIPVFVDDMTIASKSSAAIQKVKDDLRQHFKLRDLGPTSWLLGVEIKRDRSSRTLTISQRQYILDILSR 302          
BLAST of mRNA_H-paniculata_contig51753.12509.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA)

HSP 1 Score: 167 bits (424), Expect = 3.520e-47
Identity = 102/256 (39.84%), Postives = 151/256 (58.98%), Query Frame = 1
Query:    1 WRAAMEEERGALVDNGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGKDFLETSAPVACMSTLRTVFSLAAEHDFELKGMDVDAAYLNAPVEEELLVKLPPEFSLFSR-GIPF-VRRLRKSLYSLKQSGRNWNNTLDDFLDGIELDRSTTDSCLYFP------------------ATMGERQTFWWPYEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQDSYIREVLKR 708
            W+ A E E  +L+DN TW   D+  LP GRKAI  KW+FK K K DGS+ +YKARLVA+G+SQ  G D+ ET  PVA  +++R + SLAA+H+ EL+ MDV+ A+LN+ ++E++ +++P   +     G+   V +L+KSLY LKQ+ R WN T+D F+  I   +S  D C+Y                    A+  +          K  +S+RF+M DLG LS  LGIE+ R  P+G++ I Q  +++ VL +
Sbjct:   60 WKDACESEIKSLLDNKTW---DVVELPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQDEDIILVSLYVDDLILASNSDEMM----QTTKIALSKRFKMTDLGPLSYCLGIEIVRS-PSGSVFIHQSKFLKSVLTK 307          
BLAST of mRNA_H-paniculata_contig51753.12509.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY)

HSP 1 Score: 164 bits (416), Expect = 4.350e-47
Identity = 93/234 (39.74%), Postives = 130/234 (55.56%), Query Frame = 1
Query:   46 GTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGKDFLETSAPVACMSTLRTVFSLAAEHDFELKGMDVDAAYLNAPVEEELLVKLPPEFSLFSRGIPFVRRLRKSLYSLKQSGRNWNNTLDDFLDGIELDRSTTDSCLYFPATMGERQ--TFWWP------------YEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQDSYIREVLK 705
            GTWE +D   LP  R A+  KW+F++K  ++G V +YKARLVAQG+SQ+ G DFLET APV  + ++R + +LA  +++E+  MDV  AYLN  ++EE+ ++ P  F+    G   V RL K+LY LKQSG  WN  L   L  +   +   D C+Y     GE Q  T W               E K ++   F + DLG   +++G E+ RDR  G I I Q  YI  +LK
Sbjct:    2 GTWELQD---LPKDRNAVGCKWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFN---DGSGHVCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIIGFEIERDREAGKIQILQQHYIESILK 229          
BLAST of mRNA_H-paniculata_contig51753.12509.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 176 bits (445), Expect = 9.820e-47
Identity = 103/251 (41.04%), Postives = 141/251 (56.18%), Query Frame = 1
Query:    1 WRAAMEEERGALVDNGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGKDFLETSAPVACMSTLRTVFSLAAEHDFELKGMDVDAAYLNAPVEEELLVKLPPEFSLFSRGIPFVRRLRKSLYSLKQSGRNWNNTLDDFLDGIELDRSTTDSCLY-FPATMGERQ--TFWWP------------YEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQDSYIREVLKR 708
            W  A++ E   L   GTWE +D   LP  R A+  KW+F+RK  ++G V +YKARLVAQG+SQ+ G DFLET APV  + ++R + +LA  +++E+  MDV  AYLN  ++EE+ ++ P  F     G   + RLRK+LY LKQSGR WN  L   L  +   R   D C+Y +    GE Q  T W               E K ++   F + DLG   +++GIE+ RDR  G I ISQ  YI  +LKR
Sbjct:  922 WEKAVKAEYDQLQGMGTWELQD---LPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFD---DGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKR 1166          
BLAST of mRNA_H-paniculata_contig51753.12509.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3)

HSP 1 Score: 172 bits (437), Expect = 1.140e-45
Identity = 100/250 (40.00%), Postives = 136/250 (54.40%), Query Frame = 1
Query:    1 WRAAMEEERGALVDNGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGKDFLETSAPVACMSTLRTVFSLAAEHDFELKGMDVDAAYLNAPVEEELLVKLPPEFSLFSRGIPFVRRLRKSLYSLKQSGRNWNNTLDDFLDGIELDRSTTDSCLYFPATMGERQ--TFWWP------------YEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQDSYIREVLKR 708
            W  A+ EE   L    TWE +D   LP  RKAI  +W+F RK  E+G + RYKARLVAQGFSQ+ G DF  T APV    +LR + ++AA  + E++ +DV  AYLN  + EE+ ++ P  F     G   V RL+K+LY LKQSGR WN  LD  L  +   +S  D C+Y     G     T W               E K  + + F + DLG    ++G+EV+RDR   TI++ Q SY+  +LK+
Sbjct:  743 WEKAINEEYSLLEGMETWELDD---LPPERKAIGCRWVFLRKYNENGEIIRYKARLVAQGFSQIPGMDFDGTFAPVMRHDSLRALLAIAAIKNLEIQQLDVKGAYLNGDLREEIFMRQPDGFH---DGTSKVCRLKKTLYGLKQSGREWNRKLDKVLTELRFSKSNVDHCVYIRTENGHTSYITVWVDDLMIFTDKSDEMNEIKAYLKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKK 986          
BLAST of mRNA_H-paniculata_contig51753.12509.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 167 bits (424), Expect = 2.010e-45
Identity = 98/251 (39.04%), Postives = 144/251 (57.37%), Query Frame = 1
Query:    1 WRAAMEEERGALVDNGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGKDFLETSAPVACMSTLRTVFSLAAEHDFELKGMDVDAAYLNAPVEEELLVKLPPEFSLFSRGIPFVRRLRKSLYSLKQSGRNWNNTLDDFLDGIELDRSTTDSCLYFPATMGERQTFWWPY---------------EFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQDSYIREVLKR 708
            W+AAM++E  +L +NGTW+  D   LP GRKA+  KWIFKRKL EDG+V RYKARLVAQGF+Q  G D+ E  APV    T R + ++A++    +K  DV  AYLN  +EE + ++ PP +   +R    V  L+KSLY LKQ+G  WN   D  L  ++  +S  D CLY     G+  T+   Y               E    +++ F++  LG +S  LGI++ R+      ++SQ +YI+++L++
Sbjct:    9 WKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDA--VCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRN-GKGYTYLVIYVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFLGIKINRNEKG--FSLSQQTYIKQILEQ 251          
BLAST of mRNA_H-paniculata_contig51753.12509.1 vs. uniprot
Match: A0A284R853_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284R853_ARMOS)

HSP 1 Score: 166 bits (420), Expect = 4.200e-45
Identity = 99/235 (42.13%), Postives = 130/235 (55.32%), Query Frame = 1
Query:   46 GTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGKDFLETSAPVACMSTLRTVFSLAAEHDFELKGMDVDAAYLNAPVEEELLVKLPPEFSLFSRGIPFVRRLRKSLYSLKQSGRNWNNTLDDFLDGIELDRSTTDSCLYFPATMGERQ--TFWWP------------YEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQDSYIREVLKR 708
            GT+  ED   LPAGR  I  KW+F +K  EDG+++RYKARLVAQG+SQ+ G D+ ET APV  + ++     +AA  D E+  MDV  AYLN  +EEE+ ++ P  +     G   V RLRK+LY LKQSG  WN   D  L  I   +   D C+Y     G     T W               E K  +   F +KDLG   +++GIE++RDR NGTI++SQ  YI  VL R
Sbjct:    2 GTYTKED---LPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYNETFAPVVRLESVHAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYD---DGSGRVCRLRKTLYGLKQSGCEWNWEFDRKLTSIGFSKLEADHCVYKRIREGRMTIITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTR 230          
BLAST of mRNA_H-paniculata_contig51753.12509.1 vs. uniprot
Match: A0A401H727_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H727_9APHY)

HSP 1 Score: 170 bits (431), Expect = 6.860e-45
Identity = 101/251 (40.24%), Postives = 140/251 (55.78%), Query Frame = 1
Query:    1 WRAAMEEERGALVDNGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGKDFLETSAPVACMSTLRTVFSLAAEHDFELKGMDVDAAYLNAPVEEELLVKLPPEFSLFSRGIPFVRRLRKSLYSLKQSGRNWNNTLDDFLDGIELDRSTTDSCLY-FPATMGERQ--TFWWP------------YEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQDSYIREVLKR 708
            W  A++ E   L   GTWE +D   LP  R A+  KW+F+RK  ++  V +YKARLVAQG+SQ+ G DFLET APV  + ++R + +LA  +++E+  MDV  AYLN  ++EE+ ++ P  F     G   + RLRK+LY LKQSG  WN  L   L  +   R   D C+Y +    GE Q  T W               E K ++   F + DLG   +++GIE+ RDR  GT+ ISQ  YI  +LKR
Sbjct:  727 WEKAVKAEYDQLQGMGTWELQD---LPKYRNAVGCKWVFQRKTNKESQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFD---DGSGRICRLRKTLYGLKQSGCKWNRKLHRELMELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGTLQISQQHYIESILKR 971          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51753.12509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A284QR88_ARMOS4.360e-5042.40Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
W7T0D1_9STRA1.630e-4743.46Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A165UZ38_9AGAM2.280e-4739.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0WHK2_9STRA3.520e-4739.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GXA0_9APHY4.350e-4739.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GYH9_9APHY9.820e-4741.04Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A067T5Q4_GALM31.140e-4540.00Integrase catalytic domain-containing protein (Fra... [more]
A0A182GIT5_AEDAL2.010e-4539.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A284R853_ARMOS4.200e-4542.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H727_9APHY6.860e-4540.24Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51753contigH-paniculata_contig51753:498..1252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score164.9
Seed ortholog evalue4.6e-38
Seed eggNOG ortholog946362.XP_004996232.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,COG2801@1,KOG0017@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons2
Model size711
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51753.12509.1prot_H-paniculata_contig51753.12509.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51753 498..1240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930511.0813231-CDS-H-paniculata_contig51753:497..6491622930511.0813231-CDS-H-paniculata_contig51753:497..649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51753 498..649 -
1691481325.269381-CDS-H-paniculata_contig51753:497..6491691481325.269381-CDS-H-paniculata_contig51753:497..649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51753 498..649 -
1622930511.1026433-CDS-H-paniculata_contig51753:693..12401622930511.1026433-CDS-H-paniculata_contig51753:693..1240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51753 694..1240 -
1691481325.2786531-CDS-H-paniculata_contig51753:693..12401691481325.2786531-CDS-H-paniculata_contig51753:693..1240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51753 694..1240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930511.1247895-UTR-H-paniculata_contig51753:1240..12521622930511.1247895-UTR-H-paniculata_contig51753:1240..1252Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51753 1241..1252 -
1691481325.286295-UTR-H-paniculata_contig51753:1240..12521691481325.286295-UTR-H-paniculata_contig51753:1240..1252Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51753 1241..1252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51753.12509.1

>prot_H-paniculata_contig51753.12509.1 ID=prot_H-paniculata_contig51753.12509.1|Name=mRNA_H-paniculata_contig51753.12509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
MEEERGALVDNGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKA
RLVAQGFSQVEGKDFLETSAPVACMSTLRTVFSLAAEHDFELKGMDVDAA
YLNAPVEEELLVKLPPEFSLFSRGIPFVRRLRKSLYSLKQSGRNWNNTLD
DFLDGIELDRSTTDSCLYFPATMGERQTFWWPYEFKHNISQRFRMKDLGS
LSRVLGIEVRRDRPNGTITISQDSYIREVLKR*
back to top

mRNA from alignment at H-paniculata_contig51753:498..1252-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51753.12509.1 ID=mRNA_H-paniculata_contig51753.12509.1|Name=mRNA_H-paniculata_contig51753.12509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=755bp|location=Sequence derived from alignment at H-paniculata_contig51753:498..1252- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCGCGCGGCAATGGAGGAAGAACGGGGGGCGTTGGTGGACAATGGGAC ATGGGAAAGCGAAGACCTGGGGAGGTTACCGGCAGGGCGGAAGGCGATTC GTACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTAGCA CGCTACAAAGCGCGACTGGTGGCTCAAGGTTTTTCACAGGTGGAGGGTAA AGATTTCCTTGAAACCAGTGCCCCCGTAGCTTGCATGTCGACGTTACGTA CTGTTTTTAGCCTGGCCGCCGAACATGATTTCGAATTAAAAGGCATGGAC GTAGATGCAGCGTACTTGAACGCCCCGGTAGAAGAAGAACTGTTAGTTAA GCTACCCCCCGAGTTTTCCCTGTTCTCCCGAGGCATACCGTTTGTGCGCC GTCTGCGTAAAAGCCTGTACAGCCTCAAGCAGAGCGGCCGAAACTGGAAT AACACTCTTGACGATTTTCTTGATGGGATAGAACTCGACCGTTCCACTAC CGACTCGTGCTTGTACTTTCCCGCGACGATGGGGGAGAGACAAACCTTCT GGTGGCCATGTATGTTGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAT TAGACGAGTTCAAGCATAACATAAGTCAGCGTTTTAGAATGAAAGACTTG GGCTCTCTCTCGCGCGTGTTGGGAATAGAAGTACGACGTGACCGCCCTAA TGGTACCATAACGATCTCGCAGGATAGCTACATCCGCGAGGTACTAAAAA GATAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig51753:498..1252-

>mRNA_H-paniculata_contig51753.12509.1 ID=mRNA_H-paniculata_contig51753.12509.1|Name=mRNA_H-paniculata_contig51753.12509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig51753:498..1252- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAACGGGGGGCGTTGGTGGACAATGGGACATGGGAAAGCGA
AGACCTGGGGAGGTTACCGGCAGGGCGGAAGGCGATTCGTACGAAATGGA
TTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTAGCACGCTACAAAGCG
CGACTGGTGGCTCAAGGTTTTTCACAGGTGGAGGGTAAAGATTTCCTTGA
AACCAGTGCCCCCGTAGCTTGCATGTCGACGTTACGTACTGTTTTTAGCC
TGGCCGCCGAACATGATTTCGAATTAAAAGGCATGGACGTAGATGCAGCG
TACTTGAACGCCCCGGTAGAAGAAGAACTGTTAGTTAAGCTACCCCCCGA
GTTTTCCCTGTTCTCCCGAGGCATACCGTTTGTGCGCCGTCTGCGTAAAA
GCCTGTACAGCCTCAAGCAGAGCGGCCGAAACTGGAATAACACTCTTGAC
GATTTTCTTGATGGGATAGAACTCGACCGTTCCACTACCGACTCGTGCTT
GTACTTTCCCGCGACGATGGGGGAGAGACAAACCTTCTGGTGGCCATATG
GAGGAAGAACGGGGGGCGTTGGTGGACAATGGGACATGGGAAAGCGAAGA
CCTGGGGAGGTTACCGGCAGGGCGGAAGGCGATTCGTACGAAATGGATTT
TCAAGCGGAAACTGAAGGAGGACGGCAGCGTAGCACGCTACAAAGCGCGA
CTGGTGGCTCAAGGTTTTTCACAGGTGGAGGGTAAAGATTTCCTTGAAAC
CAGTGCCCCCGTAGCTTGCATGTCGACGTTACGTACTGTTTTTAGCCTGG
CCGCCGAACATGATTTCGAATTAAAAGGCATGGACGTAGATGCAGCGTAC
TTGAACGCCCCGGTAGAAGAAGAACTGTTAGTTAAGCTACCCCCCGAGTT
TTCCCTGTTCTCCCGAGGCATACCGTTTGTGCGCCGTCTGCGTAAAAGCC
TGTACAGCCTCAAGCAGAGCGGCCGAAACTGGAATAACACTCTTGACGAT
TTTCTTGATGGGATAGAACTCGACCGTTCCACTACCGACTCGTGCTTGTA
CTTTCCCGCGACGATGGGGGAGAGACAAACCTTCTGGTGGCCATACGAGT
TCAAGCATAACATAAGTCAGCGTTTTAGAATGAAAGACTTGGGCTCTCTC
TCGCGCGTGTTGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACCAT
AACGATCTCGCAGGATAGCTACATCCGCGAGGTACTAAAAAGATAGACGA
GTTCAAGCATAACATAAGTCAGCGTTTTAGAATGAAAGACTTGGGCTCTC
TCTCGCGCGTGTTGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACC
ATAACGATCTCGCAGGATAGCTACATCCGCGAGGTACTAAAAAGATAG
back to top