mRNA_H-paniculata_contig11965.1248.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A4S4L116_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L116_9AGAM) HSP 1 Score: 87.4 bits (215), Expect = 4.550e-18 Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1 Query: 1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADI 270 SST+AEYVA K V+L L + C+G TTLF DN+SA+++++ H RTKHIG R H RE + +G L LKY+ TG+Q+AD+ Sbjct: 296 SSTKAEYVAGTHAAKELVWLWALFAEISLPCKGPTTLFMDNQSAMAIAENPVYHARTKHIGARHHFLRERVEDGELELKYLPTGDQMADV 385
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A6G0WQK1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQK1_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 5.170e-18 Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 1 Query: 1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLRNLL 321 S+TE E++AA E K V+LRELL M F T L DN+S I + S +H RTKHI +R H ++ + EG++ L+Y+ T Q+ADIL +G F++L+++L Sbjct: 386 STTEVEFIAAAEAAKSIVWLRELLEEMSFVVNSPTYLHVDNQSTIQVVHRSSSHDRTKHIRLRFHFIKDLVEEGMIKLRYINTKEQVADILTRGIVLAHFEKLQSML 492
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A177WSV4_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WSV4_BATDL) HSP 1 Score: 83.6 bits (205), Expect = 1.140e-17 Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1 Query: 1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKG-SGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLRNLL 321 S+ EAEY AA + ++LR+LLG +GF G TTL+ D++SAIS G S H TKHIG++ + R+ I +GL+ +Y+ T +Q+ADIL KG R F++ NLL Sbjct: 79 STMEAEYTAAESASRELLFLRDLLGELGFEQDGPTTLYCDSQSAISNMIGPSVVHEATKHIGIKINALRDRISQGLIKPEYIGTKDQVADILTKGLPRPAFEQFVNLL 186
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A5N5G5U8_9ROSA (Uncharacterized protein n=4 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G5U8_9ROSA) HSP 1 Score: 82.0 bits (201), Expect = 1.190e-17 Identity = 43/107 (40.19%), Postives = 70/107 (65.42%), Query Frame = 1 Query: 1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLRNLL 321 S+TEAE+VAA ++LR +LG +G+ + ST ++ DN SAI LS+ H R+KHI VR H R+ +EG++ L Y ++ +Q+AD++ K + F++LR++L Sbjct: 19 STTEAEFVAAASCSCQAIWLRRMLGVLGYQQQDSTLIYCDNVSAIKLSRNPVMHGRSKHIDVRYHFLRDLCKEGVIELHYCKSEDQVADLMTKPLKQPAFEKLRSML 125
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A6G0X9X4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9X4_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.300e-17 Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 1 Query: 1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLRNLL 321 S+TE E++AA E K V+L ELL + + + S L DN+SAI +++ S AH RTKHI +R H ++ + EG++ +Y+ T Q+ADIL K +F+RLR +L Sbjct: 159 STTEVEFIAAAEAAKSIVWLIELLHELKYDIKQSIPLHVDNQSAIQVARRSSAHDRTKHIRLRFHFIKDLVDEGMIEQRYINTKEQVADILTKSIVLAQFERLRFML 265
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A1M2V968_TRAPU (Copia protein n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V968_TRAPU) HSP 1 Score: 84.3 bits (207), Expect = 1.710e-17 Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 1 Query: 1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLRNLL 321 SSTEAEY+A + +++R LL + F +T L DN+SAI+LSK S H R+KHI +R H RE I +AL YV T + +AD+ K +R RF LR L Sbjct: 141 SSTEAEYMAISYAARHAIWMRTLLAELTFAQEQATKLNADNQSAIALSKDSVHHARSKHIDIRHHFIRECIESDTIALAYVPTDDNVADLFTKALARERFHMLRRQL 247
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A6A3FC77_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FC77_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.920e-17 Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 1 Query: 1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTS 288 SSTEAEY+A + K V++R LL +G G+T ++EDN+ A+ L+K G RTKHI +R H RE + + L+YV T NQLAD++ KG S Sbjct: 51 SSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMVLAKNVGYQARTKHIDIRYHFIREKVVSNEVELEYVDTKNQLADVMTKGLS 146
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A540LT53_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540LT53_MALBA) HSP 1 Score: 85.5 bits (210), Expect = 3.880e-17 Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1 Query: 1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLRN 315 S+ EAEY+AAG ++++++L GF +G +F DN+SAI++SK H RTKHI +R H R+ I + +LAL+Y+ T QLADI K RF++LRN Sbjct: 1534 STAEAEYIAAGSCCTQVLWMKQMLCDYGF-VQGKLIIFCDNQSAINISKNPVEHSRTKHIDIRHHFIRDLIEDDILALEYIPTYKQLADIFTKALDSNRFEQLRN 1637
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A6A3JPU3_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JPU3_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 6.960e-17 Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 1 Query: 1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRK--GTSRVRFQR 306 SS EAEY+A + ++ R +L MG R +TT++EDN+ AI+L++ +G H RTKH+ +R H RE ++ G + ++YV T NQLADIL K GT ++F R Sbjct: 663 SSAEAEYMALSLCVQEVLWTRAMLTDMGTLQRNATTIWEDNQGAIALAQNAGYHARTKHVDIRHHFIRENVKRGTVKVEYVDTKNQLADILTKALGTKTLKFLR 766
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA) HSP 1 Score: 84.0 bits (206), Expect = 1.180e-16 Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 1 Query: 1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLR 312 SSTEAEYVAA ++++ +LG +GF TLF DN S I LSK + H ++KHI VR H RE +EGL+ L + T QLADI+ K FQR+R Sbjct: 379 SSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTLVHCNTEEQLADIMTKPLKMASFQRIR 482 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11965.1248.1 >prot_H-paniculata_contig11965.1248.1 ID=prot_H-paniculata_contig11965.1248.1|Name=mRNA_H-paniculata_contig11965.1248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGback to top mRNA from alignment at H-paniculata_contig11965:7613..7939- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11965.1248.1 ID=mRNA_H-paniculata_contig11965.1248.1|Name=mRNA_H-paniculata_contig11965.1248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig11965:7613..7939- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11965:7613..7939- >mRNA_H-paniculata_contig11965.1248.1 ID=mRNA_H-paniculata_contig11965.1248.1|Name=mRNA_H-paniculata_contig11965.1248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig11965:7613..7939- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |