mRNA_H-paniculata_contig11965.1248.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11965.1248.1
Unique NamemRNA_H-paniculata_contig11965.1248.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A4S4L116_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L116_9AGAM)

HSP 1 Score: 87.4 bits (215), Expect = 4.550e-18
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADI 270
            SST+AEYVA     K  V+L  L   +   C+G TTLF DN+SA+++++    H RTKHIG R H  RE + +G L LKY+ TG+Q+AD+
Sbjct:  296 SSTKAEYVAGTHAAKELVWLWALFAEISLPCKGPTTLFMDNQSAMAIAENPVYHARTKHIGARHHFLRERVEDGELELKYLPTGDQMADV 385          
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A6G0WQK1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQK1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.170e-18
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLRNLL 321
            S+TE E++AA E  K  V+LRELL  M F     T L  DN+S I +   S +H RTKHI +R H  ++ + EG++ L+Y+ T  Q+ADIL +G     F++L+++L
Sbjct:  386 STTEVEFIAAAEAAKSIVWLRELLEEMSFVVNSPTYLHVDNQSTIQVVHRSSSHDRTKHIRLRFHFIKDLVEEGMIKLRYINTKEQVADILTRGIVLAHFEKLQSML 492          
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A177WSV4_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WSV4_BATDL)

HSP 1 Score: 83.6 bits (205), Expect = 1.140e-17
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKG-SGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLRNLL 321
            S+ EAEY AA    +  ++LR+LLG +GF   G TTL+ D++SAIS   G S  H  TKHIG++ +  R+ I +GL+  +Y+ T +Q+ADIL KG  R  F++  NLL
Sbjct:   79 STMEAEYTAAESASRELLFLRDLLGELGFEQDGPTTLYCDSQSAISNMIGPSVVHEATKHIGIKINALRDRISQGLIKPEYIGTKDQVADILTKGLPRPAFEQFVNLL 186          
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A5N5G5U8_9ROSA (Uncharacterized protein n=4 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G5U8_9ROSA)

HSP 1 Score: 82.0 bits (201), Expect = 1.190e-17
Identity = 43/107 (40.19%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLRNLL 321
            S+TEAE+VAA       ++LR +LG +G+  + ST ++ DN SAI LS+    H R+KHI VR H  R+  +EG++ L Y ++ +Q+AD++ K   +  F++LR++L
Sbjct:   19 STTEAEFVAAASCSCQAIWLRRMLGVLGYQQQDSTLIYCDNVSAIKLSRNPVMHGRSKHIDVRYHFLRDLCKEGVIELHYCKSEDQVADLMTKPLKQPAFEKLRSML 125          
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A6G0X9X4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9X4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.300e-17
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLRNLL 321
            S+TE E++AA E  K  V+L ELL  + +  + S  L  DN+SAI +++ S AH RTKHI +R H  ++ + EG++  +Y+ T  Q+ADIL K     +F+RLR +L
Sbjct:  159 STTEVEFIAAAEAAKSIVWLIELLHELKYDIKQSIPLHVDNQSAIQVARRSSAHDRTKHIRLRFHFIKDLVDEGMIEQRYINTKEQVADILTKSIVLAQFERLRFML 265          
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A1M2V968_TRAPU (Copia protein n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V968_TRAPU)

HSP 1 Score: 84.3 bits (207), Expect = 1.710e-17
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLRNLL 321
            SSTEAEY+A     +  +++R LL  + F    +T L  DN+SAI+LSK S  H R+KHI +R H  RE I    +AL YV T + +AD+  K  +R RF  LR  L
Sbjct:  141 SSTEAEYMAISYAARHAIWMRTLLAELTFAQEQATKLNADNQSAIALSKDSVHHARSKHIDIRHHFIRECIESDTIALAYVPTDDNVADLFTKALARERFHMLRRQL 247          
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A6A3FC77_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FC77_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.920e-17
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTS 288
            SSTEAEY+A  +  K  V++R LL  +G    G+T ++EDN+ A+ L+K  G   RTKHI +R H  RE +    + L+YV T NQLAD++ KG S
Sbjct:   51 SSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMVLAKNVGYQARTKHIDIRYHFIREKVVSNEVELEYVDTKNQLADVMTKGLS 146          
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A540LT53_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540LT53_MALBA)

HSP 1 Score: 85.5 bits (210), Expect = 3.880e-17
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLRN 315
            S+ EAEY+AAG      ++++++L   GF  +G   +F DN+SAI++SK    H RTKHI +R H  R+ I + +LAL+Y+ T  QLADI  K     RF++LRN
Sbjct: 1534 STAEAEYIAAGSCCTQVLWMKQMLCDYGF-VQGKLIIFCDNQSAINISKNPVEHSRTKHIDIRHHFIRDLIEDDILALEYIPTYKQLADIFTKALDSNRFEQLRN 1637          
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A6A3JPU3_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JPU3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.960e-17
Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRK--GTSRVRFQR 306
            SS EAEY+A     +  ++ R +L  MG   R +TT++EDN+ AI+L++ +G H RTKH+ +R H  RE ++ G + ++YV T NQLADIL K  GT  ++F R
Sbjct:  663 SSAEAEYMALSLCVQEVLWTRAMLTDMGTLQRNATTIWEDNQGAIALAQNAGYHARTKHVDIRHHFIRENVKRGTVKVEYVDTKNQLADILTKALGTKTLKFLR 766          
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA)

HSP 1 Score: 84.0 bits (206), Expect = 1.180e-16
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 1
Query:    1 SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKGSGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRFQRLR 312
            SSTEAEYVAA       ++++ +LG +GF      TLF DN S I LSK +  H ++KHI VR H  RE  +EGL+ L +  T  QLADI+ K      FQR+R
Sbjct:  379 SSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTLVHCNTEEQLADIMTKPLKMASFQRIR 482          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11965.1248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4S4L116_9AGAM4.550e-1847.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0WQK1_9STRA5.170e-1842.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177WSV4_BATDL1.140e-1745.37Uncharacterized protein n=1 Tax=Batrachochytrium d... [more]
A0A5N5G5U8_9ROSA1.190e-1740.19Uncharacterized protein n=4 Tax=Pyrus ussuriensis ... [more]
A0A6G0X9X4_9STRA1.300e-1742.06Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1M2V968_TRAPU1.710e-1743.93Copia protein n=1 Tax=Trametes pubescens TaxID=154... [more]
A0A6A3FC77_9STRA2.920e-1745.83Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A540LT53_MALBA3.880e-1743.81Uncharacterized protein n=1 Tax=Malus baccata TaxI... [more]
A0A6A3JPU3_9STRA6.960e-1744.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1J3D358_NOCCA1.180e-1646.15Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11965contigH-paniculata_contig11965:7613..7939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score90.9
Seed ortholog evalue4e-16
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.5169585-CDS-H-paniculata_contig11965:7612..79391622928911.5169585-CDS-H-paniculata_contig11965:7612..7939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11965 7613..7939 -
1691480664.5426266-CDS-H-paniculata_contig11965:7612..79391691480664.5426266-CDS-H-paniculata_contig11965:7612..7939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11965 7613..7939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11965.1248.1prot_H-paniculata_contig11965.1248.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11965 7613..7939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11965.1248.1

>prot_H-paniculata_contig11965.1248.1 ID=prot_H-paniculata_contig11965.1248.1|Name=mRNA_H-paniculata_contig11965.1248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
SSTEAEYVAAGEGGKGTVYLRELLGSMGFGCRGSTTLFEDNKSAISLSKG
SGAHCRTKHIGVRRHGFREWIREGLLALKYVQTGNQLADILRKGTSRVRF
QRLRNLLM*
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mRNA from alignment at H-paniculata_contig11965:7613..7939-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11965.1248.1 ID=mRNA_H-paniculata_contig11965.1248.1|Name=mRNA_H-paniculata_contig11965.1248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig11965:7613..7939- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGGGGGAAAGGGGAC GGTATATCTTAGGGAGTTACTAGGATCGATGGGTTTCGGATGCAGGGGGA GCACGACATTGTTTGAGGACAATAAATCAGCTATTAGTCTCAGTAAGGGA TCCGGCGCACACTGCAGGACAAAGCACATCGGAGTGCGCCGACACGGATT TCGAGAGTGGATTCGGGAAGGGTTATTGGCGTTGAAATACGTGCAGACCG GCAACCAACTTGCTGACATTTTAAGGAAGGGAACAAGCAGAGTAAGGTTT CAGAGACTGAGAAATTTACTCATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig11965:7613..7939-

>mRNA_H-paniculata_contig11965.1248.1 ID=mRNA_H-paniculata_contig11965.1248.1|Name=mRNA_H-paniculata_contig11965.1248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig11965:7613..7939- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGGGGGAAAGGGGAC
GGTATATCTTAGGGAGTTACTAGGATCGATGGGTTTCGGATGCAGGGGGA
GCACGACATTGTTTGAGGACAATAAATCAGCTATTAGTCTCAGTAAGGGA
TCCGGCGCACACTGCAGGACAAAGCACATCGGAGTGCGCCGACACGGATT
TCGAGAGTGGATTCGGGAAGGGTTATTGGCGTTGAAATACGTGCAGACCG
GCAACCAACTTGCTGACATTTTAAGGAAGGGAACAAGCAGAGTAAGGTTT
CAGAGACTGAGAAATTTACTCATGTGATCGAGTACAGAGGCAGAGTACGT
TGCTGCAGGAGAAGGGGGAAAGGGGACGGTATATCTTAGGGAGTTACTAG
GATCGATGGGTTTCGGATGCAGGGGGAGCACGACATTGTTTGAGGACAAT
AAATCAGCTATTAGTCTCAGTAAGGGATCCGGCGCACACTGCAGGACAAA
GCACATCGGAGTGCGCCGACACGGATTTCGAGAGTGGATTCGGGAAGGGT
TATTGGCGTTGAAATACGTGCAGACCGGCAACCAACTTGCTGACATTTTA
AGGAAGGGAACAAGCAGAGTAAGGTTTCAGAGACTGAGAAATTTACTCAT
GTGA
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