mRNA_H-paniculata_contig51521.12475.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51521.12475.1
Unique NamemRNA_H-paniculata_contig51521.12475.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: D7FHZ5_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ5_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 5.330e-36
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 1
Query:    1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQ 204
            VRFVVHFSLSKS+ENYYQESGRAGRDGK SRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMV YCQ
Sbjct:  282 VRFVVHFSLSKSLENYYQESGRAGRDGKPSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVRYCQ 349          
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: A0A6H5JNZ7_9PHAE (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ7_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.010e-35
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1
Query:    1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQ 204
            VRFVVHFSLSKS+ENYYQESGRAGRDGK SRCVVFYRPSDVSRQATLSCQDQGSQPLATL+KMV YCQ
Sbjct:  108 VRFVVHFSLSKSLENYYQESGRAGRDGKPSRCVVFYRPSDVSRQATLSCQDQGSQPLATLYKMVRYCQ 175          
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: A0A2B4SSZ7_STYPI (ATP-dependent DNA helicase n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SSZ7_STYPI)

HSP 1 Score: 92.4 bits (228), Expect = 6.150e-20
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNRLCFNGTH 243
            VRFV+H SLSKS+EN+YQESGRAGRD ++S C++FYRP DV +Q+T+   +Q    L  L+ M+AYCQ +K+ R    G H
Sbjct:  281 VRFVIHHSLSKSMENFYQESGRAGRDDRESHCILFYRPFDVFQQSTMVFTEQTG--LENLYGMLAYCQEQKVCRRSLIGRH 359          
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: A0A1Y1HUB5_KLENI (ATP-dependent DNA helicase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUB5_KLENI)

HSP 1 Score: 92.0 bits (227), Expect = 8.690e-20
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNR 222
            VRFV+H SLSKSVE YYQESGRAGRDG  SRCV++YRP+DV+RQ+ +   +     L  L+ MVAYCQ+R+  R
Sbjct:  394 VRFVLHHSLSKSVETYYQESGRAGRDGLPSRCVLYYRPTDVTRQSCMVFAEASG--LENLYAMVAYCQSRQKCR 465          
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: A0A7S0XC83_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XC83_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 1.140e-19
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAY 198
            VR VVH +LSKSVE+YYQESGRAGRDG  +RCVVF+RP+D+ RQ+++   D G   L  L++MV +
Sbjct:    7 VRLVVHHTLSKSVESYYQESGRAGRDGNPARCVVFWRPADLPRQSSMVAFDAGDTSLDNLYRMVRW 72          
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: UPI0009E1B74D (ATP-dependent DNA helicase Q1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1B74D)

HSP 1 Score: 91.3 bits (225), Expect = 1.610e-19
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNRLCFNGTH 243
            VRFV+H SLSKS+EN+YQESGRAGRD K+S C++FYRP D+ +Q+T+   +Q    L  L+ M++YCQ +K  R    G H
Sbjct:  380 VRFVIHHSLSKSMENFYQESGRAGRDDKESHCILFYRPFDIFQQSTMVFTEQTG--LENLYGMLSYCQEQKNCRRALIGRH 458          
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: UPI00077AB334 (ATP-dependent DNA helicase Q1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AB334)

HSP 1 Score: 90.1 bits (222), Expect = 3.810e-19
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNRLCFNGTH 243
            VRFV+H SLSKS+ENYYQESGRAGRD  +S+C++FYRP DV +Q+T+   +Q    L  L+ M+AYC   K  R    G H
Sbjct:  312 VRFVIHHSLSKSMENYYQESGRAGRDDNRSQCILFYRPFDVFQQSTMVFTEQTG--LENLYGMLAYCHDLKTCRRTLTGRH 390          
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: A0A7I8KCP9_SPIIN (ATP-dependent DNA helicase n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KCP9_SPIIN)

HSP 1 Score: 89.7 bits (221), Expect = 5.590e-19
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNRLCFNGTHVHH 252
            VRFV+H SLSKS+E YYQESGRAGRDG  S CV++YRP+DVSRQ+++   +     L  L+ +V YCQ+R   R C      HH
Sbjct:  380 VRFVIHHSLSKSMETYYQESGRAGRDGLPSDCVLYYRPADVSRQSSMVFYENSG--LQNLYDIVRYCQSR---RSCRRNAFFHH 458          
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: A0A833VSZ3_9POAL (ATP-dependent DNA helicase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VSZ3_9POAL)

HSP 1 Score: 89.7 bits (221), Expect = 5.600e-19
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNRLCFNGTHVHH 252
            VRFV+H SLSKS+E YYQESGRAGRDG  S CV++YRP DV+RQ+++   +     L  L+ MV YCQ++K   +C      HH
Sbjct:  381 VRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYYRPGDVARQSSMVFYENCG--LQNLYDMVRYCQSKK---ICRRSAFFHH 459          
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: F1KTL5_ASCSU (ATP-dependent DNA helicase n=1 Tax=Ascaris suum TaxID=6253 RepID=F1KTL5_ASCSU)

HSP 1 Score: 89.0 bits (219), Expect = 9.450e-19
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNRLCFNGTHVHHVY 258
            VR+V+H S++KS+ENYYQESGRAGRDGKQ+ C+++YR  D+ RQ+T+ C ++    ++ L+ M+AYC  RK  R      H +  +
Sbjct:  271 VRYVIHHSMAKSMENYYQESGRAGRDGKQATCILYYRLGDLFRQSTMVCTEKTG--VSNLYSMLAYCIQRKECRRSLIAEHFNETF 354          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHZ5_ECTSI5.330e-3695.59ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JNZ7_9PHAE1.010e-3594.12Helicase C-terminal domain-containing protein n=1 ... [more]
A0A2B4SSZ7_STYPI6.150e-2054.32ATP-dependent DNA helicase n=3 Tax=Pocilloporidae ... [more]
A0A1Y1HUB5_KLENI8.690e-2060.81ATP-dependent DNA helicase n=1 Tax=Klebsormidium n... [more]
A0A7S0XC83_9CHLO1.140e-1959.09Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
UPI0009E1B74D1.610e-1953.09ATP-dependent DNA helicase Q1-like n=1 Tax=Orbicel... [more]
UPI00077AB3343.810e-1954.32ATP-dependent DNA helicase Q1-like n=1 Tax=Acropor... [more]
A0A7I8KCP9_SPIIN5.590e-1953.57ATP-dependent DNA helicase n=2 Tax=Spirodela inter... [more]
A0A833VSZ3_9POAL5.600e-1952.38ATP-dependent DNA helicase n=1 Tax=Carex littledal... [more]
F1KTL5_ASCSU9.450e-1946.51ATP-dependent DNA helicase n=1 Tax=Ascaris suum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51521contigH-paniculata_contig51521:591..857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2.3e-30
Seed eggNOG ortholog2880.D7FHZ5
Preferred nameRECQL
KEGG koko:K10899
Hectar predicted targeting categoryother localisation
GOsGO:0000724,GO:0000725,GO:0000733,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016592,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0033554,GO:0034641,GO:0036310,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097617,GO:0140097,GO:1901360,GO:1901363
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0353@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930506.8092442-CDS-H-paniculata_contig51521:590..8571622930506.8092442-CDS-H-paniculata_contig51521:590..857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51521 591..857 -
1691481323.3079875-CDS-H-paniculata_contig51521:590..8571691481323.3079875-CDS-H-paniculata_contig51521:590..857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51521 591..857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51521.12475.1prot_H-paniculata_contig51521.12475.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51521 591..857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51521.12475.1

>prot_H-paniculata_contig51521.12475.1 ID=prot_H-paniculata_contig51521.12475.1|Name=mRNA_H-paniculata_contig51521.12475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQ
DQGSQPLATLHKMVAYCQARKMNRLCFNGTHVHHVYMT*
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mRNA from alignment at H-paniculata_contig51521:591..857-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51521.12475.1 ID=mRNA_H-paniculata_contig51521.12475.1|Name=mRNA_H-paniculata_contig51521.12475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig51521:591..857- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGCTTCGTGGTTCACTTCTCGCTGAGCAAAAGCGTAGAAAACTACTA CCAGGAGAGCGGCAGAGCGGGGCGGGACGGGAAACAGAGCCGTTGCGTGG TGTTTTACCGCCCATCTGACGTTTCCCGGCAAGCGACGCTCTCGTGTCAG GACCAGGGGAGCCAGCCGCTCGCGACGCTGCACAAGATGGTCGCTTACTG CCAGGCAAGGAAGATGAATAGACTATGTTTTAATGGGACACACGTTCATC ATGTGTACATGACGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig51521:591..857-

>mRNA_H-paniculata_contig51521.12475.1 ID=mRNA_H-paniculata_contig51521.12475.1|Name=mRNA_H-paniculata_contig51521.12475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig51521:591..857- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGCTTCGTGGTTCACTTCTCGCTGAGCAAAAGCGTAGAAAACTACTA
CCAGGAGAGCGGCAGAGCGGGGCGGGACGGGAAACAGAGCCGTTGCGTGG
TGTTTTACCGCCCATCTGACGTTTCCCGGCAAGCGACGCTCTCGTGTCAG
GACCAGGGGAGCCAGCCGCTCGCGACGCTGCACAAGATGGTCGCTTACTG
CCAGGCAAGGAAGATGAATAGACTATGTTTTAATGGGACACACGTTCATC
ATGTGTACATGACGTAGGTTCGCTTCGTGGTTCACTTCTCGCTGAGCAAA
AGCGTAGAAAACTACTACCAGGAGAGCGGCAGAGCGGGGCGGGACGGGAA
ACAGAGCCGTTGCGTGGTGTTTTACCGCCCATCTGACGTTTCCCGGCAAG
CGACGCTCTCGTGTCAGGACCAGGGGAGCCAGCCGCTCGCGACGCTGCAC
AAGATGGTCGCTTACTGCCAGGCAAGGAAGATGAATAGACTATGTTTTAA
TGGGACACACGTTCATCATGTGTACATGACGTAG
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