mRNA_H-paniculata_contig51521.12475.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: D7FHZ5_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ5_ECTSI) HSP 1 Score: 137 bits (346), Expect = 5.330e-36 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 1
Query: 1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQ 204
VRFVVHFSLSKS+ENYYQESGRAGRDGK SRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMV YCQ
Sbjct: 282 VRFVVHFSLSKSLENYYQESGRAGRDGKPSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVRYCQ 349
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: A0A6H5JNZ7_9PHAE (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ7_9PHAE) HSP 1 Score: 135 bits (340), Expect = 1.010e-35 Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1
Query: 1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQ 204
VRFVVHFSLSKS+ENYYQESGRAGRDGK SRCVVFYRPSDVSRQATLSCQDQGSQPLATL+KMV YCQ
Sbjct: 108 VRFVVHFSLSKSLENYYQESGRAGRDGKPSRCVVFYRPSDVSRQATLSCQDQGSQPLATLYKMVRYCQ 175
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: A0A2B4SSZ7_STYPI (ATP-dependent DNA helicase n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SSZ7_STYPI) HSP 1 Score: 92.4 bits (228), Expect = 6.150e-20 Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNRLCFNGTH 243
VRFV+H SLSKS+EN+YQESGRAGRD ++S C++FYRP DV +Q+T+ +Q L L+ M+AYCQ +K+ R G H
Sbjct: 281 VRFVIHHSLSKSMENFYQESGRAGRDDRESHCILFYRPFDVFQQSTMVFTEQTG--LENLYGMLAYCQEQKVCRRSLIGRH 359
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: A0A1Y1HUB5_KLENI (ATP-dependent DNA helicase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUB5_KLENI) HSP 1 Score: 92.0 bits (227), Expect = 8.690e-20 Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNR 222
VRFV+H SLSKSVE YYQESGRAGRDG SRCV++YRP+DV+RQ+ + + L L+ MVAYCQ+R+ R
Sbjct: 394 VRFVLHHSLSKSVETYYQESGRAGRDGLPSRCVLYYRPTDVTRQSCMVFAEASG--LENLYAMVAYCQSRQKCR 465
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: A0A7S0XC83_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XC83_9CHLO) HSP 1 Score: 85.1 bits (209), Expect = 1.140e-19 Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1
Query: 1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAY 198
VR VVH +LSKSVE+YYQESGRAGRDG +RCVVF+RP+D+ RQ+++ D G L L++MV +
Sbjct: 7 VRLVVHHTLSKSVESYYQESGRAGRDGNPARCVVFWRPADLPRQSSMVAFDAGDTSLDNLYRMVRW 72
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: UPI0009E1B74D (ATP-dependent DNA helicase Q1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1B74D) HSP 1 Score: 91.3 bits (225), Expect = 1.610e-19 Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
Query: 1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNRLCFNGTH 243
VRFV+H SLSKS+EN+YQESGRAGRD K+S C++FYRP D+ +Q+T+ +Q L L+ M++YCQ +K R G H
Sbjct: 380 VRFVIHHSLSKSMENFYQESGRAGRDDKESHCILFYRPFDIFQQSTMVFTEQTG--LENLYGMLSYCQEQKNCRRALIGRH 458
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: UPI00077AB334 (ATP-dependent DNA helicase Q1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AB334) HSP 1 Score: 90.1 bits (222), Expect = 3.810e-19 Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNRLCFNGTH 243
VRFV+H SLSKS+ENYYQESGRAGRD +S+C++FYRP DV +Q+T+ +Q L L+ M+AYC K R G H
Sbjct: 312 VRFVIHHSLSKSMENYYQESGRAGRDDNRSQCILFYRPFDVFQQSTMVFTEQTG--LENLYGMLAYCHDLKTCRRTLTGRH 390
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: A0A7I8KCP9_SPIIN (ATP-dependent DNA helicase n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KCP9_SPIIN) HSP 1 Score: 89.7 bits (221), Expect = 5.590e-19 Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNRLCFNGTHVHH 252
VRFV+H SLSKS+E YYQESGRAGRDG S CV++YRP+DVSRQ+++ + L L+ +V YCQ+R R C HH
Sbjct: 380 VRFVIHHSLSKSMETYYQESGRAGRDGLPSDCVLYYRPADVSRQSSMVFYENSG--LQNLYDIVRYCQSR---RSCRRNAFFHH 458
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: A0A833VSZ3_9POAL (ATP-dependent DNA helicase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VSZ3_9POAL) HSP 1 Score: 89.7 bits (221), Expect = 5.600e-19 Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNRLCFNGTHVHH 252
VRFV+H SLSKS+E YYQESGRAGRDG S CV++YRP DV+RQ+++ + L L+ MV YCQ++K +C HH
Sbjct: 381 VRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYYRPGDVARQSSMVFYENCG--LQNLYDMVRYCQSKK---ICRRSAFFHH 459
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Match: F1KTL5_ASCSU (ATP-dependent DNA helicase n=1 Tax=Ascaris suum TaxID=6253 RepID=F1KTL5_ASCSU) HSP 1 Score: 89.0 bits (219), Expect = 9.450e-19 Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 1 VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQDQGSQPLATLHKMVAYCQARKMNRLCFNGTHVHHVY 258
VR+V+H S++KS+ENYYQESGRAGRDGKQ+ C+++YR D+ RQ+T+ C ++ ++ L+ M+AYC RK R H + +
Sbjct: 271 VRYVIHHSMAKSMENYYQESGRAGRDGKQATCILYYRLGDLFRQSTMVCTEKTG--VSNLYSMLAYCIQRKECRRSLIAEHFNETF 354 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51521.12475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig51521.12475.1 >prot_H-paniculata_contig51521.12475.1 ID=prot_H-paniculata_contig51521.12475.1|Name=mRNA_H-paniculata_contig51521.12475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp VRFVVHFSLSKSVENYYQESGRAGRDGKQSRCVVFYRPSDVSRQATLSCQback to top mRNA from alignment at H-paniculata_contig51521:591..857- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig51521.12475.1 ID=mRNA_H-paniculata_contig51521.12475.1|Name=mRNA_H-paniculata_contig51521.12475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig51521:591..857- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig51521:591..857- >mRNA_H-paniculata_contig51521.12475.1 ID=mRNA_H-paniculata_contig51521.12475.1|Name=mRNA_H-paniculata_contig51521.12475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig51521:591..857- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |