mRNA_H-paniculata_contig51473.12464.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51473.12464.1
Unique NamemRNA_H-paniculata_contig51473.12464.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.870e-16
Identity = 57/161 (35.40%), Postives = 90/161 (55.90%), Query Frame = 2
Query:    5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLP--TNNSPGRTGS----SLAKRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
            R++TV +V+       A L  H   L+N +++      + T +P     S+    +  + LP   ++  GR       +  KRGDIS V PWL+ CT+AA+ R R +A   +  D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF  ED
Sbjct:  200 RFQTVKKVQPRFASDHACLQTHVLHLVNKQLAEGGGASSATGTPL----STIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIECTKAASARSRGSAREDTPDDKFKRAAQACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHED 356          
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5JGW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.910e-15
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 2
Query:    8 YETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLP--TNNSPGRTGS----SLAKRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
            ++TV +V+       A+L  H   L+N +++      + T +P     S+    +R + LP   ++  GR       +  KRGDIS V PWL+  T+AA+ R R  A   +  D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF  ED
Sbjct:  250 FQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGAPL----STIRVIKRWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHED 405          
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.110e-15
Identity = 56/161 (34.78%), Postives = 89/161 (55.28%), Query Frame = 2
Query:    5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLP--TNNSPGRTGS----SLAKRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
            R++TV +V+       A+L  H   L+N +++      + T +P     S+    +  + LP   ++  GR       +  KRGDIS V PWL+  T+AA+ R R  A   +  D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF  ED
Sbjct:  179 RFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPL----STIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHED 335          
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.660e-14
Identity = 55/161 (34.16%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLP--TNNSPGRTGSSLA----KRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
            R++TV +V+       A+L  H   L+N +++      + T +P     S+    +  + LP   ++  GR          KRGDIS   PWL+  T+AA+ R R  A   +  D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF +ED
Sbjct:  186 RFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPL----STIRVIKLWYLLPGILHSFDGRIARKKRYNWFKRGDISSALPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFTRED 342          
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.910e-14
Identity = 56/165 (33.94%), Postives = 89/165 (53.94%), Query Frame = 2
Query:    5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLPT--NNSPGRTGSS----LAKRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQEDAPAL 481
            R+ETV ++K  L    A+L  H  +L+N E++  R    ++ +P     S     +  + LP   ++  GR          KRGDIS   PWLM   +AA++R R      +  D++++A  ACRH GG+ +AARALL +  + GN+ T+ ++ AKF  ED+ A+
Sbjct:  349 RFETVKKIKPWLASDHARLQTHALNLVNKELAERRELPPRSGTPL----SLLRAIKLWYLLPALLHSFDGRITRKERYKALKRGDISSTLPWLMEYAKAASSRSRGPVQEETQEDKFKRAEQACRHSGGVKDAARALLAEPRSPGNDETWERLKAKFPLEDSAAV 509          
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.250e-13
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  230 KRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
            KRGDIS V PWL+  T+AA+ R R  A   +  D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF  ED
Sbjct:  264 KRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLVDQTSPGNDETWARLKAKFPHED 343          
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5KQQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ8_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.030e-13
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 2
Query:    5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLP--TNNSPGRTGSSLA----KRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
            R++TV +V+       A+L  H   L+N +++      + T +P     S+       + LP   ++  GR          KRGDIS   PWL+  T+AA+ R R  A   +  D++++AA ACRH GG+ +AARAL  D+ +LGN+ T+  + A+F  ED
Sbjct:  164 RFQTVKKVQPRYASDHARLQTHVLHLVNKQLAEGGGASSATGTPL----STIRVITLWYLLPGILHSFDGRIARKKRHKSLKRGDISSALPWLIEYTKAASARSRGPAREDTPDDKFKRAAQACRHSGGVKDAARALFADQPSLGNDETWACLKAEFPHED 320          
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 7.820e-13
Identity = 55/161 (34.16%), Postives = 85/161 (52.80%), Query Frame = 2
Query:    5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLP--TNNSPGRTGSS----LAKRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
            R++TV +V+       A+L  H   L+N +++      + T +P     S+    +  + LP   +   GR          KR DIS V PWL+  T+AA+ R R  A      D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF  ED
Sbjct:  178 RFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPL----STIRVIKLWYLLPGILHFFDGRIARKHRYKSLKREDISSVLPWLIEYTKAASARSRGPAREDRPDDKFKRAAQACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHED 334          
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.770e-12
Identity = 51/155 (32.90%), Postives = 81/155 (52.26%), Query Frame = 2
Query:    5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLPTNNSPGRTGSSLAKRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
            R++TV +V+       A+L  H   L+N +++      + T +P     S+    +  + LP               G IS V PWL+  T+AA+ R R  A   +  D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF  ED
Sbjct:  170 RFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPL----STIRVIKLWYLLP---------------GVISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHED 305          
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5JJ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ20_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.060e-11
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  230 KRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
            KRGDIS V PWL+  T+AA+ R R  A   +  D+++ AA ACRH GG+ +AA ALL D+ + GN+ T+ ++ AKF  ED
Sbjct:  230 KRGDISSVLPWLIEYTKAASARSRGPAPEDTPDDKFKTAAQACRHSGGVKDAAGALLADQPSPGNDETWARLKAKFPHED 309          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JI32_9PHAE4.870e-1635.40Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JGW0_9PHAE3.910e-1535.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMQ2_9PHAE8.110e-1534.78Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA96_9PHAE2.660e-1434.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE2.910e-1433.94Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K195_9PHAE3.250e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQQ8_9PHAE6.030e-1333.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKQ2_9PHAE7.820e-1334.16Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KJC0_9PHAE6.770e-1232.90Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JJ20_9PHAE1.060e-1148.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51473contigH-paniculata_contig51473:190..687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size500
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930505.722163-CDS-H-paniculata_contig51473:189..5701622930505.722163-CDS-H-paniculata_contig51473:189..570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51473 190..570 +
1691481322.8373861-CDS-H-paniculata_contig51473:189..5701691481322.8373861-CDS-H-paniculata_contig51473:189..570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51473 190..570 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930505.7409222-UTR-H-paniculata_contig51473:570..6871622930505.7409222-UTR-H-paniculata_contig51473:570..687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51473 571..687 +
1691481322.8498037-UTR-H-paniculata_contig51473:570..6871691481322.8498037-UTR-H-paniculata_contig51473:570..687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51473 571..687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51473.12464.1prot_H-paniculata_contig51473.12464.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51473 190..570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51473.12464.1

>prot_H-paniculata_contig51473.12464.1 ID=prot_H-paniculata_contig51473.12464.1|Name=mRNA_H-paniculata_contig51473.12464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
TTIRDGRPGEARSPTPPSTTLSALHGPPQPRSEPAPDARSEDAVSLLRAV
KLNHVLPALLLSTDEQFSRTDRFLVSEERGHQRRAPVADGVHGGRGDPPP
VDGGEHVYGGPIQEGGGCVQAQRGDL*
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mRNA from alignment at H-paniculata_contig51473:190..687+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51473.12464.1 ID=mRNA_H-paniculata_contig51473.12464.1|Name=mRNA_H-paniculata_contig51473.12464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=498bp|location=Sequence derived from alignment at H-paniculata_contig51473:190..687+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAACGATACGAGACGGTCGTCCAGGTGAAGCACGGTCTCCAACGCCACC TAGCACAACTCTTTCTGCACTGCACGGACCTCCTCAACCACGAAGTGAGC CGGCACCGGACGCCAGGAGCGAAGACGCCGTCTCCTTACTGCGGGCAGTG AAGCTCAACCACGTTCTCCCGGCGCTGCTTCTATCTACCGACGAACAATT CTCCAGGACGGACAGGTTCCTCGTTAGCGAAGAGAGGGGACATCAGCGTC GTGCGCCCGTGGCTGATGGCGTGCACGGAGGCCGCGGCGACCCGCCGCCG GTCGACGGCGGGGAGCACGTCTACGGCGGACCGATACAGGAAGGCGGCGG CTGCGTGCAGGCACAAAGGGGGGATCTCTAACGCGGCGAGAGCGTTGTTG TGGGACGAACTCGCGCTTGGCAACGAGGGAACCTTCGGCAAAGTCAGCGC GAAATTCGGCCAGGAGGATGCGCCCGCGCTGGCAGCGGCGAAAGCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig51473:190..687+

>mRNA_H-paniculata_contig51473.12464.1 ID=mRNA_H-paniculata_contig51473.12464.1|Name=mRNA_H-paniculata_contig51473.12464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig51473:190..687+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAACGATACGAGACGGTCGTCCAGGTGAAGCACGGTCTCCAACGCCACC
TAGCACAACTCTTTCTGCACTGCACGGACCTCCTCAACCACGAAGTGAGC
CGGCACCGGACGCCAGGAGCGAAGACGCCGTCTCCTTACTGCGGGCAGTG
AAGCTCAACCACGTTCTCCCGGCGCTGCTTCTATCTACCGACGAACAATT
CTCCAGGACGGACAGGTTCCTCGTTAGCGAAGAGAGGGGACATCAGCGTC
GTGCGCCCGTGGCTGATGGCGTGCACGGAGGCCGCGGCGACCCGCCGCCG
GTCGACGGCGGGGAGCACGTCTACGGCGGACCGATACAGGAAGGCGGCGG
CTGCGTGCAGGCACAAAGGGGGGATCTCTAAACAACGATACGAGACGGTC
GTCCAGGTGAAGCACGGTCTCCAACGCCACCTAGCACAACTCTTTCTGCA
CTGCACGGACCTCCTCAACCACGAAGTGAGCCGGCACCGGACGCCAGGAG
CGAAGACGCCGTCTCCTTACTGCGGGCAGTGAAGCTCAACCACGTTCTCC
CGGCGCTGCTTCTATCTACCGACGAACAATTCTCCAGGACGGACAGGTTC
CTCGTTAGCGAAGAGAGGGGACATCAGCGTCGTGCGCCCGTGGCTGATGG
CGTGCACGGAGGCCGCGGCGACCCGCCGCCGGTCGACGGCGGGGAGCACG
TCTACGGCGGACCGATACAGGAAGGCGGCGGCTGCGTGCAGGCACAAAGG
GGGGATCTCTAA
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