mRNA_H-paniculata_contig51473.12464.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 4.870e-16 Identity = 57/161 (35.40%), Postives = 90/161 (55.90%), Query Frame = 2
Query: 5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLP--TNNSPGRTGS----SLAKRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
R++TV +V+ A L H L+N +++ + T +P S+ + + LP ++ GR + KRGDIS V PWL+ CT+AA+ R R +A + D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF ED
Sbjct: 200 RFQTVKKVQPRFASDHACLQTHVLHLVNKQLAEGGGASSATGTPL----STIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIECTKAASARSRGSAREDTPDDKFKRAAQACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHED 356
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5JGW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW0_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 3.910e-15 Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 2
Query: 8 YETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLP--TNNSPGRTGS----SLAKRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
++TV +V+ A+L H L+N +++ + T +P S+ +R + LP ++ GR + KRGDIS V PWL+ T+AA+ R R A + D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF ED
Sbjct: 250 FQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGAPL----STIRVIKRWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHED 405
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 8.110e-15 Identity = 56/161 (34.78%), Postives = 89/161 (55.28%), Query Frame = 2
Query: 5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLP--TNNSPGRTGS----SLAKRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
R++TV +V+ A+L H L+N +++ + T +P S+ + + LP ++ GR + KRGDIS V PWL+ T+AA+ R R A + D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF ED
Sbjct: 179 RFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPL----STIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHED 335
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 2.660e-14 Identity = 55/161 (34.16%), Postives = 88/161 (54.66%), Query Frame = 2
Query: 5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLP--TNNSPGRTGSSLA----KRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
R++TV +V+ A+L H L+N +++ + T +P S+ + + LP ++ GR KRGDIS PWL+ T+AA+ R R A + D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF +ED
Sbjct: 186 RFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPL----STIRVIKLWYLLPGILHSFDGRIARKKRYNWFKRGDISSALPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFTRED 342
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 2.910e-14 Identity = 56/165 (33.94%), Postives = 89/165 (53.94%), Query Frame = 2
Query: 5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLPT--NNSPGRTGSS----LAKRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQEDAPAL 481
R+ETV ++K L A+L H +L+N E++ R ++ +P S + + LP ++ GR KRGDIS PWLM +AA++R R + D++++A ACRH GG+ +AARALL + + GN+ T+ ++ AKF ED+ A+
Sbjct: 349 RFETVKKIKPWLASDHARLQTHALNLVNKELAERRELPPRSGTPL----SLLRAIKLWYLLPALLHSFDGRITRKERYKALKRGDISSTLPWLMEYAKAASSRSRGPVQEETQEDKFKRAEQACRHSGGVKDAARALLAEPRSPGNDETWERLKAKFPLEDSAAV 509
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 3.250e-13 Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query: 230 KRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
KRGDIS V PWL+ T+AA+ R R A + D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF ED
Sbjct: 264 KRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLVDQTSPGNDETWARLKAKFPHED 343
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5KQQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ8_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 6.030e-13 Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 2
Query: 5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLP--TNNSPGRTGSSLA----KRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
R++TV +V+ A+L H L+N +++ + T +P S+ + LP ++ GR KRGDIS PWL+ T+AA+ R R A + D++++AA ACRH GG+ +AARAL D+ +LGN+ T+ + A+F ED
Sbjct: 164 RFQTVKKVQPRYASDHARLQTHVLHLVNKQLAEGGGASSATGTPL----STIRVITLWYLLPGILHSFDGRIARKKRHKSLKRGDISSALPWLIEYTKAASARSRGPAREDTPDDKFKRAAQACRHSGGVKDAARALFADQPSLGNDETWACLKAEFPHED 320
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 7.820e-13 Identity = 55/161 (34.16%), Postives = 85/161 (52.80%), Query Frame = 2
Query: 5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLP--TNNSPGRTGSS----LAKRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
R++TV +V+ A+L H L+N +++ + T +P S+ + + LP + GR KR DIS V PWL+ T+AA+ R R A D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF ED
Sbjct: 178 RFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPL----STIRVIKLWYLLPGILHFFDGRIARKHRYKSLKREDISSVLPWLIEYTKAASARSRGPAREDRPDDKFKRAAQACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHED 334
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 6.770e-12 Identity = 51/155 (32.90%), Postives = 81/155 (52.26%), Query Frame = 2
Query: 5 RYETVVQVKHGLQRHLAQLFLHCTDLLNHEVSRHRTPGAKTPSPYCGQ*SSTTFSRRCFYLPTNNSPGRTGSSLAKRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
R++TV +V+ A+L H L+N +++ + T +P S+ + + LP G IS V PWL+ T+AA+ R R A + D++++AA ACRH GG+ +AARALL D+ + GN+ T+ ++ AKF ED
Sbjct: 170 RFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPL----STIRVIKLWYLLP---------------GVISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHED 305
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Match: A0A6H5JJ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ20_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 1.060e-11 Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query: 230 KRGDISVVRPWLMACTEAAATRRRSTAGSTSTADRYRKAAAACRHKGGISNAARALLWDELALGNEGTFGKVSAKFGQED 469
KRGDIS V PWL+ T+AA+ R R A + D+++ AA ACRH GG+ +AA ALL D+ + GN+ T+ ++ AKF ED
Sbjct: 230 KRGDISSVLPWLIEYTKAASARSRGPAPEDTPDDKFKTAAQACRHSGGVKDAAGALLADQPSPGNDETWARLKAKFPHED 309 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51473.12464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig51473.12464.1 >prot_H-paniculata_contig51473.12464.1 ID=prot_H-paniculata_contig51473.12464.1|Name=mRNA_H-paniculata_contig51473.12464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp TTIRDGRPGEARSPTPPSTTLSALHGPPQPRSEPAPDARSEDAVSLLRAVback to top mRNA from alignment at H-paniculata_contig51473:190..687+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig51473.12464.1 ID=mRNA_H-paniculata_contig51473.12464.1|Name=mRNA_H-paniculata_contig51473.12464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=498bp|location=Sequence derived from alignment at H-paniculata_contig51473:190..687+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig51473:190..687+ >mRNA_H-paniculata_contig51473.12464.1 ID=mRNA_H-paniculata_contig51473.12464.1|Name=mRNA_H-paniculata_contig51473.12464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig51473:190..687+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |