mRNA_H-paniculata_contig51307.12441.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51307.12441.1
Unique NamemRNA_H-paniculata_contig51307.12441.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A1M2VH23_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VH23_TRAPU)

HSP 1 Score: 76.6 bits (187), Expect = 9.300e-16
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    1 EPKNHREAQASPEWEHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
            EP+   EAQASP+W HW+ A   E+  L  +     VE P N  +V +  ++  K   +G + +YK  LVA G  Q+ GI + E  +P   +A  R +L+LAA  DWE+
Sbjct:   12 EPRTLAEAQASPDWPHWENAIAKEIDNLRKHDTYDLVEPPHNTNIVGSRFVFRIKRDAEGSITQYKARLVAQGFTQMPGIDFNETFAPVAKLASIRTILALAARYDWEL 120          
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: UPI00092FCD17 (uncharacterized protein LOC109338179 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092FCD17)

HSP 1 Score: 74.7 bits (182), Expect = 1.150e-14
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    4 PKNHREAQASPEWEHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
            PK + E     + E WQ A E EM+ +  N+    VE  K+   +    +YN+ IGEDGKVE YK  LVA G CQ  GI Y E  SP   +   R++L++ A  D+++
Sbjct:   50 PKCYEEVMQISDNEKWQEATESEMESMKTNKVWTLVEASKDIKPIVCKWVYNKNIGEDGKVETYKARLVAKGYCQKGGIDYDETYSPVAMMKLIRILLAVEAYHDYKI 157          
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL)

HSP 1 Score: 73.2 bits (178), Expect = 8.140e-13
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 1
Query:   19 EAQASPEWEHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
            EA+  P+W HWQ A   E+  L        V  P  + VV    +   K    G++EKYK  LVA G  Q++G+ Y E  +P   +A  R+VL++AA  DW++
Sbjct: 1067 EARRRPDWPHWQAAINTELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDI 1169          
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A2P6S8W7_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S8W7_ROSCH)

HSP 1 Score: 70.5 bits (171), Expect = 7.120e-12
Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   49 WQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
            W+ A  +E+Q L DN+    V  P +K  +    +Y  K   DG +E+YK  LVA G  Q++G+ Y+E  +P   +   R++LSLAA Q+W +
Sbjct:  778 WREAMRLEVQALQDNKTWSLVPPPAHKRPIGCKWVYKIKYNPDGTIERYKARLVAKGYSQVEGLDYRETFAPVAKLTTVRVLLSLAAQQNWHL 870          
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 67.8 bits (164), Expect = 7.610e-12
Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   46 HWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
            HW+ A + E + L      + V  P+N+ V+ +  +Y  K  +DGKV +YK  LVA G  Q  G+ Y E  SP       R+VLSLAA+  W++
Sbjct:   64 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDL 157          
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY)

HSP 1 Score: 70.1 bits (170), Expect = 9.400e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1
Query:   13 HREAQASPEWEHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
            +REA A PE E W+ A E E+  +      + VE PK   VV  + +  +K  E+ +V K+K  L A G  Q+ G+ Y +  +P   +A  R+VL+LAA  DWEV
Sbjct:  223 YREAMAGPESEDWRVAMEEELAKIEAMGTYELVEKPKGANVVGCVWVLRKKRDENNEVAKFKARLCAQGFSQVHGVDYDQTAAPTARLASLRLVLALAAANDWEV 327          
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A5N5FUF0_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FUF0_9ROSA)

HSP 1 Score: 68.6 bits (166), Expect = 3.320e-11
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 1
Query:    1 EPKNHREAQASPEWEHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
            EP ++++A +S    HW+ A + E + L      + V  P+N+ V+ +  +Y  K  +DGKV +YK  LVA G  Q  G+ Y+E  SP       R+VLSLAA+  W++
Sbjct:  615 EPTHYKQAVSSV---HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSPVVRHTTVRLVLSLAAMNKWDL 720          
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A151S309_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S309_CAJCA)

HSP 1 Score: 67.8 bits (164), Expect = 6.120e-11
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   43 EHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
            E W+RA E E+  L +N     V  P   + +    +Y  K   DG +E+YK  LVA G  QI+G+ Y +  SP   +   R+VL+LAA+Q+W +
Sbjct:  273 ECWKRAMEAEISALENNGTWTLVHLPPGIISIGNKWVYKIKTRSDGTIERYKARLVAKGYTQIEGLDYLDTFSPVAKLTTIRVVLALAAMQNWHI 367          
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A8I6XHP4_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XHP4_HORVV)

HSP 1 Score: 67.8 bits (164), Expect = 6.170e-11
Identity = 40/109 (36.70%), Postives = 55/109 (50.46%), Query Frame = 1
Query:    1 EPKNHREAQASPEWEHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
            EP N  EA  SP W H   A + EM+ +  N     V  P N+  V    +Y  K    G + KYK  LVA G  Q +G+ Y E  +P   +   R++L+LAA +DW+V
Sbjct:  669 EPANFVEASKSPSWTH---AMDEEMKAIESNGTWTLVTRPPNQKTVGLKWVYKLKKDTKGAIVKYKARLVAKGYVQRQGVDYDEVFAPVARIETVRVLLALAAQEDWKV 774          
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A2K3NXK0_TRIPR (Putative copia-type polyprotein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3NXK0_TRIPR)

HSP 1 Score: 67.8 bits (164), Expect = 6.290e-11
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 1
Query:   49 WQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
            W++A + E++ +  N   + VE PK +  V    IY  K+ E G+++K+K  LVA G  Q  GI Y E  +P       RMV++LAA+ +W V
Sbjct:  822 WRKAMDAEIEAIEKNNTWELVELPKGEKAVGVKWIYKTKVNEKGEIDKFKARLVAKGYTQKYGIDYSEVFAPVARHDTIRMVIALAALNNWTV 914          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M2VH23_TRAPU9.300e-1637.61Retrovirus-related Pol polyprotein from transposon... [more]
UPI00092FCD171.150e-1438.89uncharacterized protein LOC109338179 n=1 Tax=Lupin... [more]
A0A146H565_MYCCL8.140e-1335.92Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473... [more]
A0A2P6S8W7_ROSCH7.120e-1236.56Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A540NMU0_MALBA7.610e-1237.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7NVE6_9APHY9.400e-1238.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N5FUF0_9ROSA3.320e-1135.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151S309_CAJCA6.120e-1136.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A8I6XHP4_HORVV6.170e-1136.70Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
A0A2K3NXK0_TRIPR6.290e-1136.56Putative copia-type polyprotein n=2 Tax=Trifolium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51307contigH-paniculata_contig51307:921..1247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size183
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.6452327-UTR-H-paniculata_contig51307:920..10641622930502.6452327-UTR-H-paniculata_contig51307:920..1064Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51307 921..1064 +
1691481321.6180203-UTR-H-paniculata_contig51307:920..10641691481321.6180203-UTR-H-paniculata_contig51307:920..1064Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51307 921..1064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.6631207-CDS-H-paniculata_contig51307:1064..12471622930502.6631207-CDS-H-paniculata_contig51307:1064..1247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51307 1065..1247 +
1691481321.62756-CDS-H-paniculata_contig51307:1064..12471691481321.62756-CDS-H-paniculata_contig51307:1064..1247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51307 1065..1247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51307.12441.1prot_H-paniculata_contig51307.12441.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51307 1065..1247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51307.12441.1

>prot_H-paniculata_contig51307.12441.1 ID=prot_H-paniculata_contig51307.12441.1|Name=mRNA_H-paniculata_contig51307.12441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMV
LSLAAIQDWEV
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mRNA from alignment at H-paniculata_contig51307:921..1247+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51307.12441.1 ID=mRNA_H-paniculata_contig51307.12441.1|Name=mRNA_H-paniculata_contig51307.12441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig51307:921..1247+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACCCAAGAATCACCGGGAGGCTCAGGCGTCGCCGGAGTGGGAACACTG GCAAAGAGCGGAGGAAGTTGAGATGCAAGGCCTAATCGACAACAGGGCTT AGAAGCAAGTGGAGCACCCGAAGAACAAGCTGGTCGTGAGCACGATGATG ATCTACAACAGAAAAATCGGCGAGGACGGAAAAGTGGAGAAATACAAGTG CTCCCTGGTCGCCCATGGAAACTGTCAGATCAAGGGCATCCATTACCAGG AAGCTTTGTCCCCTGCACCCGCAGTGGCCAGGACAAGAATGGTGTTGTCG CTGGCGGCAATCCAGGACTGGGAAGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig51307:921..1247+

>mRNA_H-paniculata_contig51307.12441.1 ID=mRNA_H-paniculata_contig51307.12441.1|Name=mRNA_H-paniculata_contig51307.12441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig51307:921..1247+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGATCTACAACAGAAAAATCGGCGAGGACGGAAAAGTGGAGAAATA
CAAGTGCTCCCTGGTCGCCCATGGAAACTGTCAGATCAAGGGCATCCATT
ACCAGGAAGCTTTGTCCCCTGCACCCGCAGTGGCCAGGACAAGAATGGTG
TTGTCGCTGGCGGCAATCCAGGACTGGGAAGTAATGATGATCTACAACAG
AAAAATCGGCGAGGACGGAAAAGTGGAGAAATACAAGTGCTCCCTGGTCG
CCCATGGAAACTGTCAGATCAAGGGCATCCATTACCAGGAAGCTTTGTCC
CCTGCACCCGCAGTGGCCAGGACAAGAATGGTGTTGTCGCTGGCGGCAAT
CCAGGACTGGGAAGTA
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