mRNA_H-paniculata_contig51307.12441.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A1M2VH23_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VH23_TRAPU) HSP 1 Score: 76.6 bits (187), Expect = 9.300e-16 Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 1 EPKNHREAQASPEWEHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
EP+ EAQASP+W HW+ A E+ L + VE P N +V + ++ K +G + +YK LVA G Q+ GI + E +P +A R +L+LAA DWE+
Sbjct: 12 EPRTLAEAQASPDWPHWENAIAKEIDNLRKHDTYDLVEPPHNTNIVGSRFVFRIKRDAEGSITQYKARLVAQGFTQMPGIDFNETFAPVAKLASIRTILALAARYDWEL 120
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: UPI00092FCD17 (uncharacterized protein LOC109338179 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092FCD17) HSP 1 Score: 74.7 bits (182), Expect = 1.150e-14 Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1
Query: 4 PKNHREAQASPEWEHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
PK + E + E WQ A E EM+ + N+ VE K+ + +YN+ IGEDGKVE YK LVA G CQ GI Y E SP + R++L++ A D+++
Sbjct: 50 PKCYEEVMQISDNEKWQEATESEMESMKTNKVWTLVEASKDIKPIVCKWVYNKNIGEDGKVETYKARLVAKGYCQKGGIDYDETYSPVAMMKLIRILLAVEAYHDYKI 157
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL) HSP 1 Score: 73.2 bits (178), Expect = 8.140e-13 Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 1
Query: 19 EAQASPEWEHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
EA+ P+W HWQ A E+ L V P + VV + K G++EKYK LVA G Q++G+ Y E +P +A R+VL++AA DW++
Sbjct: 1067 EARRRPDWPHWQAAINTELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDI 1169
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A2P6S8W7_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S8W7_ROSCH) HSP 1 Score: 70.5 bits (171), Expect = 7.120e-12 Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 1
Query: 49 WQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
W+ A +E+Q L DN+ V P +K + +Y K DG +E+YK LVA G Q++G+ Y+E +P + R++LSLAA Q+W +
Sbjct: 778 WREAMRLEVQALQDNKTWSLVPPPAHKRPIGCKWVYKIKYNPDGTIERYKARLVAKGYSQVEGLDYRETFAPVAKLTTVRVLLSLAAQQNWHL 870
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA) HSP 1 Score: 67.8 bits (164), Expect = 7.610e-12 Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 1
Query: 46 HWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
HW+ A + E + L + V P+N+ V+ + +Y K +DGKV +YK LVA G Q G+ Y E SP R+VLSLAA+ W++
Sbjct: 64 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDL 157
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY) HSP 1 Score: 70.1 bits (170), Expect = 9.400e-12 Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1
Query: 13 HREAQASPEWEHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
+REA A PE E W+ A E E+ + + VE PK VV + + +K E+ +V K+K L A G Q+ G+ Y + +P +A R+VL+LAA DWEV
Sbjct: 223 YREAMAGPESEDWRVAMEEELAKIEAMGTYELVEKPKGANVVGCVWVLRKKRDENNEVAKFKARLCAQGFSQVHGVDYDQTAAPTARLASLRLVLALAAANDWEV 327
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A5N5FUF0_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FUF0_9ROSA) HSP 1 Score: 68.6 bits (166), Expect = 3.320e-11 Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 1
Query: 1 EPKNHREAQASPEWEHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
EP ++++A +S HW+ A + E + L + V P+N+ V+ + +Y K +DGKV +YK LVA G Q G+ Y+E SP R+VLSLAA+ W++
Sbjct: 615 EPTHYKQAVSSV---HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSPVVRHTTVRLVLSLAAMNKWDL 720
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A151S309_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S309_CAJCA) HSP 1 Score: 67.8 bits (164), Expect = 6.120e-11 Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 43 EHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
E W+RA E E+ L +N V P + + +Y K DG +E+YK LVA G QI+G+ Y + SP + R+VL+LAA+Q+W +
Sbjct: 273 ECWKRAMEAEISALENNGTWTLVHLPPGIISIGNKWVYKIKTRSDGTIERYKARLVAKGYTQIEGLDYLDTFSPVAKLTTIRVVLALAAMQNWHI 367
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A8I6XHP4_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XHP4_HORVV) HSP 1 Score: 67.8 bits (164), Expect = 6.170e-11 Identity = 40/109 (36.70%), Postives = 55/109 (50.46%), Query Frame = 1
Query: 1 EPKNHREAQASPEWEHWQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
EP N EA SP W H A + EM+ + N V P N+ V +Y K G + KYK LVA G Q +G+ Y E +P + R++L+LAA +DW+V
Sbjct: 669 EPANFVEASKSPSWTH---AMDEEMKAIESNGTWTLVTRPPNQKTVGLKWVYKLKKDTKGAIVKYKARLVAKGYVQRQGVDYDEVFAPVARIETVRVLLALAAQEDWKV 774
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Match: A0A2K3NXK0_TRIPR (Putative copia-type polyprotein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3NXK0_TRIPR) HSP 1 Score: 67.8 bits (164), Expect = 6.290e-11 Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 1
Query: 49 WQRAEEVEMQGLIDNRA*KQVEHPKNKLVVSTMMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVLSLAAIQDWEV 327
W++A + E++ + N + VE PK + V IY K+ E G+++K+K LVA G Q GI Y E +P RMV++LAA+ +W V
Sbjct: 822 WRKAMDAEIEAIEKNNTWELVELPKGEKAVGVKWIYKTKVNEKGEIDKFKARLVAKGYTQKYGIDYSEVFAPVARHDTIRMVIALAALNNWTV 914 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51307.12441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig51307.12441.1 >prot_H-paniculata_contig51307.12441.1 ID=prot_H-paniculata_contig51307.12441.1|Name=mRNA_H-paniculata_contig51307.12441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp MMIYNRKIGEDGKVEKYKCSLVAHGNCQIKGIHYQEALSPAPAVARTRMVback to top mRNA from alignment at H-paniculata_contig51307:921..1247+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig51307.12441.1 ID=mRNA_H-paniculata_contig51307.12441.1|Name=mRNA_H-paniculata_contig51307.12441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig51307:921..1247+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig51307:921..1247+ >mRNA_H-paniculata_contig51307.12441.1 ID=mRNA_H-paniculata_contig51307.12441.1|Name=mRNA_H-paniculata_contig51307.12441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig51307:921..1247+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |