mRNA_H-paniculata_contig50927.12381.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE) HSP 1 Score: 105 bits (263), Expect = 5.450e-23 Identity = 67/196 (34.18%), Postives = 100/196 (51.02%), Query Frame = 1
Query: 10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQMVHDKRYEVIVLQDLHAE--YERVRITSFEKRDFGLDDIRYMVHAMYVHNLSRSSNFKPVAGRDIAMQAAGYNRSNVQCNYCKGVGHVIQDCAVLKAKEL-RQKAVVGHVRQGRDG--KQKWCSFHKATTHSDEECR 582
GDG AAW AL ++++ QT EA++ACH +L + R G DP DFF + + L+ +G+ V D Y I+L L +E +R + +D ++ + +V SR+++ V+GR AM A QC CK GH +DC K +Q G ++G G + KWCS+H THSD EC+
Sbjct: 90 GDGTAAWRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDLVYLDIMLSGLTKAPVFEFIREMHYRDNFTSVDSLQATANCFFVDQHSRNASGPVVSGRGAAMAVAS---DTDQCRRCKAYGHFQRDCPQQVQKSRPKQSKKKGANKRGSGGSVQPKWCSYHNTKTHSDAECQ 282
BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 102 bits (255), Expect = 6.430e-22 Identity = 67/194 (34.54%), Postives = 100/194 (51.55%), Query Frame = 1
Query: 10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQMVHDKRYEVIVLQDLHAEYERVRITSFEKRD--FGLDDIRYMVHAMYVHNLSRSSNFKPVAGRDIAMQAAGYNRSNVQCNYCKGVGHVIQDCAVL--KAKELRQKAVVGHVRQGRDGKQKWCSFHKATTHSDEEC 579
GDG AAW A ++++ QT EA++ACH +L + R G DP DFF + + L +G+ V Y I+L L E I RD +D ++ + ++V SR+++ V+GR AM AA S+ QC+ CK G +DC K++ + K + G + KWC++HK TTHSD EC
Sbjct: 110 GDGTAAWRAQHERFDAQTQEARRACHNELFNLRHLAGNDPIDFFTKGWDLKLRLMVLGEEVSSPVYLDIMLSGLTKAPEFTFIREMHYRDNIASVDSLQATANRIFVDQQSRNASGPMVSGRGAAMAAAS---SSDQCHRCKEYGPFQRDCPKQGQKSRSNQAKRNGKSKKGGGSAQPKWCAYHKPTTHSDAEC 300
BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5L4Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y1_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.820e-16 Identity = 51/159 (32.08%), Postives = 77/159 (48.43%), Query Frame = 1
Query: 109 MEPGQDPDDFFFFLDECRQTLEDMGQMVHDKRYEVIVLQDLHAEYERVRITSFEKRDFGLDDIRYMVHAMYVHNLSRSSNFKPVAGRDIAMQAAGYNRSNVQCNYCKGVGHVIQDCAVLKAKELRQKAVVGHVRQGRD--GKQKWCSFHKATTHSDEEC 579
MEPG +PDDFF+ R LE MG+ + D+R++ I +Q +Y+ +++ F F + ++ + +++ R +AGR AM S C C GHV ++C + K GH+ + G KWCS H TTHSDEEC
Sbjct: 1 MEPGDNPDDFFYKQHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGCAMAT---KTSGPICFECNEPGHVRRNCPNRQRK--------GHMPKKTKPAGANKWCSVHNTTTHSDEEC 148
BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5K626_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K626_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 2.340e-8 Identity = 39/119 (32.77%), Postives = 65/119 (54.62%), Query Frame = 1
Query: 13 DGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQMVHDKRYEVIVLQDLHA--EYERVRITSFEKRDFGLDDIRYMVHAMYVHNLSRSSNFKPVA 363
DG AAW AL ++++ QT EA++ACH +L + R G DP DFF + + L+ +G+ V D Y I+L L E++ +R + +D ++ + +V SR+++ PVA
Sbjct: 102 DGTAAWRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDPVYMDIMLSGLTKAPEFKFIREMHYRDNFTSVDSLQATANRFFVDQQSRNAS-GPVA 219
BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 1.230e-6 Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQMVHDKRYEVIVLQDL 231
GDG AAW AL D+++ QT EA++ACH +L + R G DP DFF + + L+ +G+ D Y I+L L
Sbjct: 83 GDGTAAWRALNDRFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEASDPVYLDIMLSGL 156
BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 1.680e-6 Identity = 53/197 (26.90%), Postives = 75/197 (38.07%), Query Frame = 1
Query: 10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQMVHD---KRYEVIVLQDLHAEYERVRITSFEKRDFGLDDIRYMVHAMYVHNLSRSSNFKPVAGRDIAMQAAGYNRSNVQCNYCKGVGHVIQDCAVLKAKEL-RQKAVVGHVRQGRDG--KQKWCSFHKATTHSDEECR 582
GDG AAW AL ++++ QT EA++ACH +L + R G R +G D + V SR+++ V+GR +AM A QC CK GH +DC K RQ G ++G G + KWCS+ THS+ EC+
Sbjct: 101 GDGTAAWRALNERFDAQTQEARRACHNELFNLRHLAGV----------AQRVGPRGLGPGGCDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANRFVVDQQSRNASGPVVSGRGVAMGVAS---DTDQCRRCKAHGHFQRDCPQQVQKSRPRQGKKKGPNKRGSGGSAQPKWCSYSNTKTHSNAECQ 284
BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5KRA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRA6_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 3.090e-6 Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQ 186
G+G AWNAL D+++ QT EA++ACH +L + R PG DP DFF + + L +G+
Sbjct: 184 GNGAEAWNALNDRFDAQTQEARRACHNELFNLRHLPGGDPIDFFTKSWDLKLRLRGLGE 242
BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5JWN9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN9_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 1.700e-5 Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQMVHDKRYEVIVLQDL 231
GD AAW AL ++++ QT EA++ACH +L + R G DP DFF + + L+ +G+ V D Y I+L L
Sbjct: 101 GDRTAAWRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFRKGWDLKLRLKVLGEEVSDPVYLDIMLSGL 174
BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE) HSP 1 Score: 53.1 bits (126), Expect = 8.130e-5 Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFF 141
GDG AAW AL ++++ QT EA++ACH +L + R G DP DFF
Sbjct: 101 GDGTAAWRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFF 144 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig50927.12381.1 >prot_H-paniculata_contig50927.12381.1 ID=prot_H-paniculata_contig50927.12381.1|Name=mRNA_H-paniculata_contig50927.12381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp DGTGDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLback to top mRNA from alignment at H-paniculata_contig50927:38..619+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig50927.12381.1 ID=mRNA_H-paniculata_contig50927.12381.1|Name=mRNA_H-paniculata_contig50927.12381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=582bp|location=Sequence derived from alignment at H-paniculata_contig50927:38..619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig50927:38..619+ >mRNA_H-paniculata_contig50927.12381.1 ID=mRNA_H-paniculata_contig50927.12381.1|Name=mRNA_H-paniculata_contig50927.12381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig50927:38..619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |