mRNA_H-paniculata_contig50927.12381.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig50927.12381.1
Unique Name	mRNA_H-paniculata_contig50927.12381.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.450e-23
Identity = 67/196 (34.18%), Postives = 100/196 (51.02%), Query Frame = 1

Query:   10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQMVHDKRYEVIVLQDLHAE--YERVRITSFEKRDFGLDDIRYMVHAMYVHNLSRSSNFKPVAGRDIAMQAAGYNRSNVQCNYCKGVGHVIQDCAVLKAKEL-RQKAVVGHVRQGRDG--KQKWCSFHKATTHSDEECR 582
            GDG AAW AL ++++ QT EA++ACH +L + R   G DP DFF    + +  L+ +G+ V D  Y  I+L  L     +E +R   +      +D ++   +  +V   SR+++   V+GR  AM  A       QC  CK  GH  +DC     K   +Q    G  ++G  G  + KWCS+H   THSD EC+
Sbjct:   90 GDGTAAWRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDLVYLDIMLSGLTKAPVFEFIREMHYRDNFTSVDSLQATANCFFVDQHSRNASGPVVSGRGAAMAVAS---DTDQCRRCKAYGHFQRDCPQQVQKSRPKQSKKKGANKRGSGGSVQPKWCSYHNTKTHSDAECQ 282

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BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 6.430e-22
Identity = 67/194 (34.54%), Postives = 100/194 (51.55%), Query Frame = 1

Query:   10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQMVHDKRYEVIVLQDLHAEYERVRITSFEKRD--FGLDDIRYMVHAMYVHNLSRSSNFKPVAGRDIAMQAAGYNRSNVQCNYCKGVGHVIQDCAVL--KAKELRQKAVVGHVRQGRDGKQKWCSFHKATTHSDEEC 579
            GDG AAW A  ++++ QT EA++ACH +L + R   G DP DFF    + +  L  +G+ V    Y  I+L  L    E   I     RD    +D ++   + ++V   SR+++   V+GR  AM AA    S+ QC+ CK  G   +DC     K++  + K      + G   + KWC++HK TTHSD EC
Sbjct:  110 GDGTAAWRAQHERFDAQTQEARRACHNELFNLRHLAGNDPIDFFTKGWDLKLRLMVLGEEVSSPVYLDIMLSGLTKAPEFTFIREMHYRDNIASVDSLQATANRIFVDQQSRNASGPMVSGRGAAMAAAS---SSDQCHRCKEYGPFQRDCPKQGQKSRSNQAKRNGKSKKGGGSAQPKWCAYHKPTTHSDAEC 300

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BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5L4Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y1_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.820e-16
Identity = 51/159 (32.08%), Postives = 77/159 (48.43%), Query Frame = 1

Query:  109 MEPGQDPDDFFFFLDECRQTLEDMGQMVHDKRYEVIVLQDLHAEYERVRITSFEKRDFGLDDIRYMVHAMYVHNLSRSSNFKPVAGRDIAMQAAGYNRSNVQCNYCKGVGHVIQDCAVLKAKELRQKAVVGHVRQGRD--GKQKWCSFHKATTHSDEEC 579
            MEPG +PDDFF+     R  LE MG+ + D+R++ I +Q    +Y+ +++  F    F +  ++  +  +++    R      +AGR  AM       S   C  C   GHV ++C   + K        GH+ +     G  KWCS H  TTHSDEEC
Sbjct:    1 MEPGDNPDDFFYKQHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGCAMAT---KTSGPICFECNEPGHVRRNCPNRQRK--------GHMPKKTKPAGANKWCSVHNTTTHSDEEC 148

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BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5K626_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K626_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.340e-8
Identity = 39/119 (32.77%), Postives = 65/119 (54.62%), Query Frame = 1

Query:   13 DGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQMVHDKRYEVIVLQDLHA--EYERVRITSFEKRDFGLDDIRYMVHAMYVHNLSRSSNFKPVA 363
            DG AAW AL ++++ QT EA++ACH +L + R   G DP DFF    + +  L+ +G+ V D  Y  I+L  L    E++ +R   +      +D ++   +  +V   SR+++  PVA
Sbjct:  102 DGTAAWRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDPVYMDIMLSGLTKAPEFKFIREMHYRDNFTSVDSLQATANRFFVDQQSRNAS-GPVA 219

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BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.230e-6
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1

Query:   10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQMVHDKRYEVIVLQDL 231
            GDG AAW AL D+++ QT EA++ACH +L + R   G DP DFF    + +  L+ +G+   D  Y  I+L  L
Sbjct:   83 GDGTAAWRALNDRFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEASDPVYLDIMLSGL 156

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BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.680e-6
Identity = 53/197 (26.90%), Postives = 75/197 (38.07%), Query Frame = 1

Query:   10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQMVHD---KRYEVIVLQDLHAEYERVRITSFEKRDFGLDDIRYMVHAMYVHNLSRSSNFKPVAGRDIAMQAAGYNRSNVQCNYCKGVGHVIQDCAVLKAKEL-RQKAVVGHVRQGRDG--KQKWCSFHKATTHSDEECR 582
            GDG AAW AL ++++ QT EA++ACH +L + R   G             R     +G    D                                        +   V   SR+++   V+GR +AM  A       QC  CK  GH  +DC     K   RQ    G  ++G  G  + KWCS+    THS+ EC+
Sbjct:  101 GDGTAAWRALNERFDAQTQEARRACHNELFNLRHLAGV----------AQRVGPRGLGPGGCDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANRFVVDQQSRNASGPVVSGRGVAMGVAS---DTDQCRRCKAHGHFQRDCPQQVQKSRPRQGKKKGPNKRGSGGSAQPKWCSYSNTKTHSNAECQ 284

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BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5KRA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRA6_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.090e-6
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1

Query:   10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQ 186
            G+G  AWNAL D+++ QT EA++ACH +L + R  PG DP DFF    + +  L  +G+
Sbjct:  184 GNGAEAWNALNDRFDAQTQEARRACHNELFNLRHLPGGDPIDFFTKSWDLKLRLRGLGE 242

[Close]

BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5JWN9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.700e-5
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 1

Query:   10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFLDECRQTLEDMGQMVHDKRYEVIVLQDL 231
            GD  AAW AL ++++ QT EA++ACH +L + R   G DP DFF    + +  L+ +G+ V D  Y  I+L  L
Sbjct:  101 GDRTAAWRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFRKGWDLKLRLKVLGEEVSDPVYLDIMLSGL 174

[Close]

BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 8.130e-5
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1

Query:   10 GDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFF 141
            GDG AAW AL ++++ QT EA++ACH +L + R   G DP DFF
Sbjct:  101 GDGTAAWRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFF 144

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig50927.12381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9


Match Name	E-value	Identity	Description
A0A6H5KC00_9PHAE	5.450e-23	34.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBV6_9PHAE	6.430e-22	34.54	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5L4Y1_9PHAE	1.820e-16	32.08	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K626_9PHAE	2.340e-8	32.77	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JKW9_9PHAE	1.230e-6	41.89	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JC75_9PHAE	1.680e-6	26.90	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KRA6_9PHAE	3.090e-6	44.07	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JWN9_9PHAE	1.700e-5	40.54	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5J9Q7_9PHAE	8.130e-5	52.27	gag_pre-integrs domain-containing protein n=1 Tax=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig50927	contig	H-paniculata_contig50927:38..619 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Metazoa
Seed ortholog score	65.9
Seed ortholog evalue	2.4e-08
Seed eggNOG ortholog	8128.ENSONIP00000026676
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Pfam:UBN2_2
EggNOG OGs	38DPC@33154,3BI7U@33208,3CTS1@33213,48JS3@7711,49GTT@7742,COG2801@1,KOG0017@2759
COG Functional cat.	L
Best tax level	Vertebrata
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	582
Cds size	582
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930493.3818913-CDS-H-paniculata_contig50927:37..619	1622930493.3818913-CDS-H-paniculata_contig50927:37..619	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig50927 38..619 +
1691481317.136175-CDS-H-paniculata_contig50927:37..619	1691481317.136175-CDS-H-paniculata_contig50927:37..619	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig50927 38..619 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig50927.12381.1	prot_H-paniculata_contig50927.12381.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig50927 38..619 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig50927:38..619+
coding sequence from alignment at H-paniculata_contig50927:38..619+

protein sequence of mRNA_H-paniculata_contig50927.12381.1

>prot_H-paniculata_contig50927.12381.1 ID=prot_H-paniculata_contig50927.12381.1|Name=mRNA_H-paniculata_contig50927.12381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
DGTGDGQAAWNALVDKYNCQTTEAKKACHEKLVSTRMEPGQDPDDFFFFL
DECRQTLEDMGQMVHDKRYEVIVLQDLHAEYERVRITSFEKRDFGLDDIR
YMVHAMYVHNLSRSSNFKPVAGRDIAMQAAGYNRSNVQCNYCKGVGHVIQ
DCAVLKAKELRQKAVVGHVRQGRDGKQKWCSFHKATTHSDEECR

mRNA from alignment at H-paniculata_contig50927:38..619+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig50927.12381.1 ID=mRNA_H-paniculata_contig50927.12381.1|Name=mRNA_H-paniculata_contig50927.12381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=582bp|location=Sequence derived from alignment at H-paniculata_contig50927:38..619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGAACTGGAGATGGACAGGCGGCTTGGAATGCCCTGGTGGATAAGTA
TAACTGCCAAACAACAGAGGCCAAGAAGGCATGCCACGAGAAGCTGGTCA
GTACGAGGATGGAGCCTGGTCAGGATCCCGATGACTTCTTCTTTTTCTTA
GACGAATGCCGTCAAACTCTCGAGGACATGGGGCAGATGGTGCACGACAA
GCGCTACGAGGTCATTGTCCTCCAAGATCTTCATGCCGAATATGAAAGGG
TGCGAATCACCAGCTTCGAGAAGCGGGACTTCGGACTGGACGACATCCGA
TACATGGTACATGCCATGTACGTCCACAACCTTTCACGTTCTTCAAATTT
CAAGCCAGTCGCAGGTCGCGACATCGCGATGCAGGCGGCCGGGTACAACC
GCAGCAACGTGCAGTGCAACTACTGCAAGGGTGTCGGGCACGTCATACAG
GATTGCGCTGTCCTTAAGGCGAAGGAGCTCCGGCAAAAGGCCGTAGTTGG
ACACGTGCGGCAAGGGAGAGACGGCAAACAAAAGTGGTGCTCGTTCCACA
AGGCGACTACGCACAGTGACGAGGAGTGCCGC

Coding sequence (CDS) from alignment at H-paniculata_contig50927:38..619+

>mRNA_H-paniculata_contig50927.12381.1 ID=mRNA_H-paniculata_contig50927.12381.1|Name=mRNA_H-paniculata_contig50927.12381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig50927:38..619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGAACTGGAGATGGACAGGCGGCTTGGAATGCCCTGGTGGATAAGTA
TAACTGCCAAACAACAGAGGCCAAGAAGGCATGCCACGAGAAGCTGGTCA
GTACGAGGATGGAGCCTGGTCAGGATCCCGATGACTTCTTCTTTTTCTTA
GACGAATGCCGTCAAACTCTCGAGGACATGGGGCAGATGGTGCACGACAA
GCGCTACGAGGTCATTGTCCTCCAAGATCTTCATGCCGAATATGAAAGGG
TGCGAATCACCAGCTTCGAGAAGCGGGACTTCGGACTGGACGACATCCGA
TACATGGTACATGCCATGTACGTCCACAACCTTTCACGTTCTTCAAATTT
CAAGCCAGTCGCAGGTCGCGACATCGCGATGCAGGCGGCCGGGTACAACC
GCAGCAACGTGCAGTGCAACTACTGCAAGGGTGTCGGGCACGTCATACAG
GATTGCGCTGTCCTTAAGGCGAAGGAGCTCCGGCAAAAGGCCGTAGTTGG
ACACGTGCGGCAAGGGAGAGACGGCAAACAAAAGTGGTGCTCGTTCCACA
AGGCGACTACGCACAGTGACGAGGAGTGCCGCGACGGAACTGGAGATGGA
CAGGCGGCTTGGAATGCCCTGGTGGATAAGTATAACTGCCAAACAACAGA
GGCCAAGAAGGCATGCCACGAGAAGCTGGTCAGTACGAGGATGGAGCCTG
GTCAGGATCCCGATGACTTCTTCTTTTTCTTAGACGAATGCCGTCAAACT
CTCGAGGACATGGGGCAGATGGTGCACGACAAGCGCTACGAGGTCATTGT
CCTCCAAGATCTTCATGCCGAATATGAAAGGGTGCGAATCACCAGCTTCG
AGAAGCGGGACTTCGGACTGGACGACATCCGATACATGGTACATGCCATG
TACGTCCACAACCTTTCACGTTCTTCAAATTTCAAGCCAGTCGCAGGTCG
CGACATCGCGATGCAGGCGGCCGGGTACAACCGCAGCAACGTGCAGTGCA
ACTACTGCAAGGGTGTCGGGCACGTCATACAGGATTGCGCTGTCCTTAAG
GCGAAGGAGCTCCGGCAAAAGGCCGTAGTTGGACACGTGCGGCAAGGGAG
AGACGGCAAACAAAAGTGGTGCTCGTTCCACAAGGCGACTACGCACAGTG
ACGAGGAGTGCCGC