prot_H-paniculata_contig50885.12373.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig50885.12373.1
Unique Nameprot_H-paniculata_contig50885.12373.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length193
Homology
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: Q9ZQK0_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9ZQK0_ARATH)

HSP 1 Score: 58.2 bits (139), Expect = 1.700e-6
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 0
Query:   65 DSDGLEYRKVGGMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGK 156
            +S G  Y  +  ++  I D+GA+ HM  DS L+ N +   G+V +A+G+R+P++GVG L L   FD      K ++A ++P  + +LLS+ K
Sbjct:  298 ESSGKSYHALSSLKPLIIDSGASHHMISDSKLISNIEPALGNVVIANGDRIPVKGVGDLDL---FD------KSSKAFYMPTFTSNLLSVKK 380          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM)

HSP 1 Score: 57.8 bits (138), Expect = 1.970e-6
Identity = 46/148 (31.08%), Postives = 77/148 (52.03%), Query Frame = 0
Query:   36 QVADEDAYEFIAAYIASTSTTGKEEVLSVDSDGLEYRKVGGMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLKTGRVL 181
            +V  ED  EF+  Y+ + +TT ++        G   +     +  I D+GA+ HM  D  L+ + ++  G V +A+G+R+PIEGVG L L   FD +      + A ++P  + +LLS+ K   D G +     + +   +LKTGRV+
Sbjct:  272 RVTKEDWDEFVK-YVYALATTRRQ--------GAPAKASTSNKPIIVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C)

HSP 1 Score: 57.4 bits (137), Expect = 2.830e-6
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 0
Query:   76 GMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGKFADFGHEY 164
            G++  I D+GA+ HM  D  L+ N +   GHV +A+G+R+PI GVG L L F  DS+        A ++P  + +LLS+ K +D G EY
Sbjct:  395 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSK--------ALYMPEFASNLLSV-KRSDNGGEY 473          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B)

HSP 1 Score: 57.4 bits (137), Expect = 2.960e-6
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 0
Query:   76 GMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGKFADFGHEY 164
            G++  I D+GA+ HM  D  L+ N +   GHV +A+G+R+PI GVG L L F  DS+        A ++P  + +LLS+ K +D G EY
Sbjct:  410 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSK--------ALYMPEFTSNLLSV-KRSDNGGEY 488          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90)

HSP 1 Score: 57.4 bits (137), Expect = 2.990e-6
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 0
Query:   76 GMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGKFADFGHEY 164
            G++  I D+GA+ HM  D  L+ N +   GHV +A+G+R+PI GVG L L F  DS+        A ++P  + +LLS+ K +D G EY
Sbjct:  409 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSK--------ALYMPEFTSNLLSV-KRSDNGGEY 487          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: UPI000539F602 (uncharacterized protein LOC104779247 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000539F602)

HSP 1 Score: 57.0 bits (136), Expect = 3.450e-6
Identity = 48/161 (29.81%), Postives = 77/161 (47.83%), Query Frame = 0
Query:    2 RCFICRSKDHLRRECPNVYCGRCGQRGHDLYACLQVADED--AYEFIAAYIASTSTTGKEEVLSV------DSDGLEYRKVGGMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSL 154
            RC+I     HLR   P   CG  G R H +      A+ +  A +     +A+TS   ++  L        D+ G  Y  +   +  I D+GA+ HM  DS L+   +   G+V +A+G ++P++G+G L L   FD      K T+A ++P  +  LLS+
Sbjct:   48 RCWILHP--HLRANRPMNNCG--GPRAHQVTVEPSTAEPNQRASDVNGTALAATSDLVRKSDLDALIKALKDASGNSYLALNQTKPLIVDSGASHHMISDSKLISELKPAVGNVIIANGEKVPVKGIGDLKL---FD------KTTKAFYMPSFTSKLLSV 195          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH)

HSP 1 Score: 56.2 bits (134), Expect = 7.730e-6
Identity = 32/94 (34.04%), Postives = 54/94 (57.45%), Query Frame = 0
Query:   61 VLSVDSDGLEYRKVGGMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSL 154
            ++S+   G+ +         + D+GA+ HM  +S+LL N +   GHV +A+G+++PIEG+G L L F  DS+        A F+P  + +LLS+
Sbjct:  323 IVSLKESGITFSSQTSSSSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSK--------AFFMPKFTSNLLSV 407          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: A0A1J3DSB6_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DSB6_NOCCA)

HSP 1 Score: 52.4 bits (124), Expect = 1.280e-5
Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 0
Query:   81 ICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGK 156
            I D+GA+ HM  D +L+ + +   GHV +A+G+++PI+G+G L L   FD E      +QA ++P  + +LLS+ K
Sbjct:   33 IVDSGASHHMISDLNLIKDIKPALGHVSIANGDQIPIKGIGNLKL---FDKE------SQAFYMPSFTSNLLSVKK 99          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: Q9FWZ5_ARATH (Putative retroelement polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FWZ5_ARATH)

HSP 1 Score: 55.5 bits (132), Expect = 1.390e-5
Identity = 32/94 (34.04%), Postives = 54/94 (57.45%), Query Frame = 0
Query:   61 VLSVDSDGLEYRKVGGMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSL 154
            ++S+   G+ +         + D+GA+ HM  +S+LL N +   GHV +A+G+++PIEG+G L L F  DS+        A F+P  + +LLS+
Sbjct:  310 IVSLKESGITFSSQTSSGSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSK--------AFFMPKFTSNLLSV 394          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: UPI0006AB2FB3 (uncharacterized protein LOC106407804 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB2FB3)

HSP 1 Score: 55.1 bits (131), Expect = 1.630e-5
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 0
Query:   76 GMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGKFAD 159
            G++  I D+GA+ HM  D  L+ N +   GHV +A+G+R+PI GVG L L F  DS+        A ++P  + +LLS+ +  D
Sbjct:  414 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSK--------ALYMPEFTSNLLSVKRCTD 488          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q9ZQK0_ARATH1.700e-635.87Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
A0A8D9D973_BRACM1.970e-631.08(field mustard) hypothetical protein (Fragment) n=... [more]
UPI000BBEF31C2.830e-640.45uncharacterized protein LOC111199942 n=1 Tax=Brass... [more]
UPI000BBE966B2.960e-640.45uncharacterized protein LOC106448712 n=1 Tax=Brass... [more]
UPI000BBECC902.990e-640.45uncharacterized protein LOC106373021 n=1 Tax=Brass... [more]
UPI000539F6023.450e-629.81uncharacterized protein LOC104779247 n=1 Tax=Camel... [more]
A0A178U605_ARATH7.730e-634.04ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
A0A1J3DSB6_NOCCA1.280e-538.16Uncharacterized protein (Fragment) n=1 Tax=Noccaea... [more]
Q9FWZ5_ARATH1.390e-534.04Putative retroelement polyprotein n=1 Tax=Arabidop... [more]
UPI0006AB2FB31.630e-538.10uncharacterized protein LOC106407804 n=1 Tax=Brass... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 2..18
e-value: 0.0081
score: 24.1
coord: 20..36
e-value: 9.3
score: 5.2
NoneNo IPR availableGENE3D4.10.60.10coord: 1..37
e-value: 1.1E-6
score: 30.4
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 2..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50885contigH-paniculata_contig50885:426..1067 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50885.12373.1mRNA_H-paniculata_contig50885.12373.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig50885 426..1067 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig50885.12373.1 ID=prot_H-paniculata_contig50885.12373.1|Name=mRNA_H-paniculata_contig50885.12373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
PRCFICRSKDHLRRECPNVYCGRCGQRGHDLYACLQVADEDAYEFIAAYI
ASTSTTGKEEVLSVDSDGLEYRKVGGMEIWICDNGATKHMTHDSDLLFNY
QECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHH
LLSLGKFADFGHEYRCSREGLRINLKTGRVLSAEQFGRLHVMR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf