mRNA_H-paniculata_contig50794.12362.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50794.12362.1
Unique NamemRNA_H-paniculata_contig50794.12362.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig50794.12362.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.600e-12
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:    1 MVLGQDPDLYFIPIEDYRRRLFAMGETITDRRFEGWVLNAMPSEYEPVKAIHSSDPDFVVAKMKVMMKYIYTNIIANNAKFKRVRGRGVTMVAQAPSEARNDIKCFNCHKF 333
            M  G+DPD +FI +ED R+R   M E I+D RFE  +L A+ ++Y+ V+        F + ++K  MK +Y + ++     K V GRGV M A   S   + IKCFNC +F
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSRTWT-KSVAGRGVAMPA---SNGDSIIKCFNCGQF 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50794.12362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWF9_9PHAE3.600e-1238.74Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50794contigH-paniculata_contig50794:191..544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930490.87484-CDS-H-paniculata_contig50794:190..5441622930490.87484-CDS-H-paniculata_contig50794:190..544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50794 191..544 +
1691481315.9383962-CDS-H-paniculata_contig50794:190..5441691481315.9383962-CDS-H-paniculata_contig50794:190..544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50794 191..544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50794.12362.1prot_H-paniculata_contig50794.12362.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50794 191..544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50794.12362.1

>prot_H-paniculata_contig50794.12362.1 ID=prot_H-paniculata_contig50794.12362.1|Name=mRNA_H-paniculata_contig50794.12362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MVLGQDPDLYFIPIEDYRRRLFAMGETITDRRFEGWVLNAMPSEYEPVKA
IHSSDPDFVVAKMKVMMKYIYTNIIANNAKFKRVRGRGVTMVAQAPSEAR
NDIKCFNCHKFGHYRSKC
back to top

mRNA from alignment at H-paniculata_contig50794:191..544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50794.12362.1 ID=mRNA_H-paniculata_contig50794.12362.1|Name=mRNA_H-paniculata_contig50794.12362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig50794:191..544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCTCGGACAAGACCCGGATCTCTACTTCATCCCGATTGAGGACTA
TCGCAGGAGGCTGTTTGCAATGGGCGAGACGATCACGGACCGCAGATTCG
AGGGGTGGGTGCTGAACGCAATGCCCTCGGAGTACGAGCCTGTCAAGGCT
ATCCACTCGAGCGACCCGGATTTCGTAGTGGCAAAGATGAAGGTGATGAT
GAAGTACATCTACACCAACATCATCGCCAACAACGCCAAGTTCAAAAGGG
TGCGAGGCCGCGGTGTGACCATGGTGGCCCAGGCACCATCAGAAGCTCGC
AACGACATCAAGTGCTTCAACTGCCACAAGTTTGGGCACTACAGGTCCAA
GTGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig50794:191..544+

>mRNA_H-paniculata_contig50794.12362.1 ID=mRNA_H-paniculata_contig50794.12362.1|Name=mRNA_H-paniculata_contig50794.12362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig50794:191..544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCTCGGACAAGACCCGGATCTCTACTTCATCCCGATTGAGGACTA
TCGCAGGAGGCTGTTTGCAATGGGCGAGACGATCACGGACCGCAGATTCG
AGGGGTGGGTGCTGAACGCAATGCCCTCGGAGTACGAGCCTGTCAAGGCT
ATCCACTCGAGCGACCCGGATTTCGTAGTGGCAAAGATGAAGGTGATGAT
GAAGTACATCTACACCAACATCATCGCCAACAACGCCAAGTTCAAAAGGG
TGCGAGGCCGCGGTGTGACCATGGTGGCCCAGGCACCATCAGAAGCTCGC
AACGACATCAAGTGCTTCAACTGCCACAAGTTTGGGCACTACAGGTCCAA
GTGCATGGTCCTCGGACAAGACCCGGATCTCTACTTCATCCCGATTGAGG
ACTATCGCAGGAGGCTGTTTGCAATGGGCGAGACGATCACGGACCGCAGA
TTCGAGGGGTGGGTGCTGAACGCAATGCCCTCGGAGTACGAGCCTGTCAA
GGCTATCCACTCGAGCGACCCGGATTTCGTAGTGGCAAAGATGAAGGTGA
TGATGAAGTACATCTACACCAACATCATCGCCAACAACGCCAAGTTCAAA
AGGGTGCGAGGCCGCGGTGTGACCATGGTGGCCCAGGCACCATCAGAAGC
TCGCAACGACATCAAGTGCTTCAACTGCCACAAGTTTGGGCACTACAGGT
CCAAGTGC
back to top