prot_H-paniculata_contig50794.12362.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig50794.12362.1
Unique Nameprot_H-paniculata_contig50794.12362.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length118
Homology
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BLAST of mRNA_H-paniculata_contig50794.12362.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.600e-12
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 0 
Query:    1 MVLGQDPDLYFIPIEDYRRRLFAMGETITDRRFEGWVLNAMPSEYEPVKAIHSSDPDFVVAKMKVMMKYIYTNIIANNAKFKRVRGRGVTMVAQAPSEARNDIKCFNCHKF 111
            M  G+DPD +FI +ED R+R   M E I+D RFE  +L A+ ++Y+ V+        F + ++K  MK +Y + ++     K V GRGV M A   S   + IKCFNC +F
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSRTWT-KSVAGRGVAMPA---SNGDSIIKCFNCGQF 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50794.12362.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWF9_9PHAE3.600e-1238.74Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 104..118
score: 8.845
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 90..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50794contigH-paniculata_contig50794:191..544 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50794.12362.1mRNA_H-paniculata_contig50794.12362.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig50794 191..544 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig50794.12362.1 ID=prot_H-paniculata_contig50794.12362.1|Name=mRNA_H-paniculata_contig50794.12362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MVLGQDPDLYFIPIEDYRRRLFAMGETITDRRFEGWVLNAMPSEYEPVKA
IHSSDPDFVVAKMKVMMKYIYTNIIANNAKFKRVRGRGVTMVAQAPSEAR
NDIKCFNCHKFGHYRSKC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf