mRNA_H-paniculata_contig11928.1230.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 127 bits (320), Expect = 1.300e-30 Identity = 68/196 (34.69%), Postives = 111/196 (56.63%), Query Frame = 1 Query: 7 ISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 594 I + ++ K NE G + K R+VA G QI + + +SS P+AA+ + V++ T K +L H D ++AYI A + +EI + PE G V ++++A+YGL +GR W + L +EQ DPC+F K++DGE V +IV+Y+DD++++ + +EL L + +K VGE ++ GC I D Sbjct: 258 IGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEG-EREELFASLNKKFPVKDVGECTWYDGCAIAMD 452
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5KY81_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY81_9PHAE) HSP 1 Score: 125 bits (314), Expect = 1.550e-30 Identity = 66/187 (35.29%), Postives = 108/187 (57.75%), Query Frame = 1 Query: 34 KMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 594 K NE G + K R+VA G QI + + +SS P AA+ + +++ T K +L H D ++AYI A + +EI + PE + G V ++++A+YGL +GR W ++ L +EQ DPC+F K++DGE V +IV+Y+DD+L++ + + L L ++ +KG+GE + GC I D Sbjct: 156 KTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPPAASIKTMIAVATEKGKKLDHWDVKQAYIHATLNEEIYLRFPEGHGSMSGKVVKVERALYGLKQSGREWGVEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEG-EREGLFASLNKNFPVKGMGECTWVDGCAIAMD 341
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 127 bits (318), Expect = 2.960e-30 Identity = 68/196 (34.69%), Postives = 110/196 (56.12%), Query Frame = 1 Query: 7 ISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 594 I + ++ K NE G + K R+VA G QI + + +SS P+AA+ + V++ T K +L H D ++AYI A + +EI + PE G V ++++A+YGL GR W + L +EQ DPC+F K++DGE V +IV+Y+DD+L++ + +EL L + +K +GE ++ GC I D Sbjct: 545 IGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEG-EREELFASLNKKFPVKDLGECTWYDGCAIAMD 739
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE) HSP 1 Score: 126 bits (317), Expect = 4.010e-30 Identity = 68/196 (34.69%), Postives = 111/196 (56.63%), Query Frame = 1 Query: 7 ISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 594 I + ++ K NE G + K R+VA G QI + + +SS P+AA+ + V++ T K +L H D ++AYI A + +EI + PE G V ++++A+YGL +GR W + L +EQ DPC+F K++DGE V +IV+Y+DD+L++ + +EL L + +K +GE ++ GC I D Sbjct: 404 IGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEG-EREELFASLNKKFPVKDLGECTWYDGCAIAMD 598
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE) HSP 1 Score: 125 bits (313), Expect = 1.270e-29 Identity = 67/196 (34.18%), Postives = 110/196 (56.12%), Query Frame = 1 Query: 7 ISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 594 I + ++ K NE G + K R+VA G QI + + +SS P+AA+ + V++ T K +L H D ++AYI A + +EI + PE G V ++++A+YGL +GR W + L +EQ DPC+F K++DGE V +IV+Y+DD++++ + +EL L + +K +GE + GC I D Sbjct: 310 IGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFQKVVDGEVVGLIVIYVDDIIVAADEG-EPEELFASLNKKFPVKDLGECTCYDGCAIAMD 504
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A5N5I5B1_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5I5B1_9ROSA) HSP 1 Score: 124 bits (312), Expect = 1.960e-29 Identity = 70/196 (35.71%), Postives = 112/196 (57.14%), Query Frame = 1 Query: 4 IISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEF--PGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHI 585 IIS+ +YK K N DG+ ++ K RLVAHG Q + L Y E SP T +++L+ T W LR D + A++ + +++ ++ P+ + + PG V +L K++YGL A R W+ K T A F+ S +D LF KI DG + ++++Y+DD++++ S K+ ++ DL KLK +G Y LG HI Sbjct: 819 IISSKWVYKVKKNPDGSTSRFKARLVAHGYTQEQGLDYSETFSPVVRHTTVRLILALATQFSWSLRQLDIKNAFLHGDLEEDVYMKQPQGFVDATCPGYVCKLVKSLYGLKQAPRAWNSKFTSYFPAVGFQSSFSDSSLFVKI-DGSDIILLLLYVDDIILTGSDSTKIQSVIDDLAGVFKLKDMGRLTYFLGLHI 1013
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE) HSP 1 Score: 122 bits (306), Expect = 6.110e-29 Identity = 65/187 (34.76%), Postives = 106/187 (56.68%), Query Frame = 1 Query: 34 KMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 594 K NE G + +K R+VA QI + + +SS P+AA+ + V++ T K +L H D ++AYI A + +E + PE G V ++++A+YGL +GR W + L +EQ DPC+F K++DGE V +IV+Y+DD+L++ + +EL L + +K +GE ++ GC I D Sbjct: 70 KTNEKGLIVDNKARMVARVFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIESEYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEG-EREELFASLNKKFPVKDLGECTWYDGCAIAMD 255
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE) HSP 1 Score: 120 bits (301), Expect = 7.920e-29 Identity = 62/173 (35.84%), Postives = 101/173 (58.38%), Query Frame = 1 Query: 76 LVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 594 +VA G QI + +R +SS P+AA+ + V++ T K +L H D ++AYI A + +EI + PE G V ++++A+YGL +GR W + L +EQ DPC+F K++DGE V +IV+Y+DD+L++ + +EL L + +K +GE ++ GC I D Sbjct: 1 MVARGFSQIPGIDFRHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDR-EELFASLNKKFPVKDLGECTWYDGCAIVMD 172
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.030e-28 Identity = 64/196 (32.65%), Postives = 109/196 (55.61%), Query Frame = 1 Query: 7 ISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 594 I + ++ K NE G + K R++A G QI + + + S P+AA+ + V++ T +L H D ++AYI A + +E + PE Y G V ++++A+YGL +GR W + L +EQ DPC+F K++DGE V++IV+Y+DD+L+ + +EL L + ++ +GE ++ GC I D Sbjct: 27 IGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKLAHWDVKQAYIHAKLKEETCLRFPEGYGNMSGKVVKVERALYGLKQSGREWGFEAAGALIENGYEQCRVDPCVFRKVVDGEVVSLIVIYVDDILVVADEG-EREELFASLNKKFPVESLGEYTWYDGCAIAMD 221
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE) HSP 1 Score: 121 bits (304), Expect = 1.570e-28 Identity = 66/196 (33.67%), Postives = 110/196 (56.12%), Query Frame = 1 Query: 7 ISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 594 I + ++ K N G + K R+VA G QI + + +SS P+AA+ + V++ T K +L H D ++AYI A + +EI + +PE G V ++++A+YGL +GR W ++ L EQ DPC+F K++DGE V +IV+Y+D++L++ + +EL L + +K +GE + GC I D Sbjct: 328 IGSKWVFSSKTNGKGLIVDFKARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVAADEG-EREELFASLNKKFPVKYMGECTWFDGCAIAMD 522 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11928.1230.1 >prot_H-paniculata_contig11928.1230.1 ID=prot_H-paniculata_contig11928.1230.1|Name=mRNA_H-paniculata_contig11928.1230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp MIISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAAback to top mRNA from alignment at H-paniculata_contig11928:5985..6590- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11928.1230.1 ID=mRNA_H-paniculata_contig11928.1230.1|Name=mRNA_H-paniculata_contig11928.1230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=606bp|location=Sequence derived from alignment at H-paniculata_contig11928:5985..6590- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11928:5985..6590- >mRNA_H-paniculata_contig11928.1230.1 ID=mRNA_H-paniculata_contig11928.1230.1|Name=mRNA_H-paniculata_contig11928.1230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig11928:5985..6590- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |