prot_H-paniculata_contig11928.1230.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11928.1230.1
Unique Nameprot_H-paniculata_contig11928.1230.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length202
Homology
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.300e-30
Identity = 68/196 (34.69%), Postives = 111/196 (56.63%), Query Frame = 0
Query:    3 ISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 198
            I +  ++  K NE G +   K R+VA G  QI  + +  +SS  P+AA+ + V++  T K  +L H D ++AYI A + +EI +  PE      G V ++++A+YGL  +GR W  +    L    +EQ   DPC+F K++DGE V +IV+Y+DD++++     + +EL   L +   +K VGE  ++ GC I  D
Sbjct:  258 IGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEG-EREELFASLNKKFPVKDVGECTWYDGCAIAMD 452          
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5KY81_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY81_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.550e-30
Identity = 66/187 (35.29%), Postives = 108/187 (57.75%), Query Frame = 0
Query:   12 KMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 198
            K NE G +   K R+VA G  QI  + +  +SS  P AA+ + +++  T K  +L H D ++AYI A + +EI +  PE +    G V ++++A+YGL  +GR W ++    L    +EQ   DPC+F K++DGE V +IV+Y+DD+L++     + + L   L ++  +KG+GE  +  GC I  D
Sbjct:  156 KTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPPAASIKTMIAVATEKGKKLDHWDVKQAYIHATLNEEIYLRFPEGHGSMSGKVVKVERALYGLKQSGREWGVEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEG-EREGLFASLNKNFPVKGMGECTWVDGCAIAMD 341          
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.960e-30
Identity = 68/196 (34.69%), Postives = 110/196 (56.12%), Query Frame = 0
Query:    3 ISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 198
            I +  ++  K NE G +   K R+VA G  QI  + +  +SS  P+AA+ + V++  T K  +L H D ++AYI A + +EI +  PE      G V ++++A+YGL   GR W  +    L    +EQ   DPC+F K++DGE V +IV+Y+DD+L++     + +EL   L +   +K +GE  ++ GC I  D
Sbjct:  545 IGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEG-EREELFASLNKKFPVKDLGECTWYDGCAIAMD 739          
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 4.010e-30
Identity = 68/196 (34.69%), Postives = 111/196 (56.63%), Query Frame = 0
Query:    3 ISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 198
            I +  ++  K NE G +   K R+VA G  QI  + +  +SS  P+AA+ + V++  T K  +L H D ++AYI A + +EI +  PE      G V ++++A+YGL  +GR W  +    L    +EQ   DPC+F K++DGE V +IV+Y+DD+L++     + +EL   L +   +K +GE  ++ GC I  D
Sbjct:  404 IGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEG-EREELFASLNKKFPVKDLGECTWYDGCAIAMD 598          
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.270e-29
Identity = 67/196 (34.18%), Postives = 110/196 (56.12%), Query Frame = 0
Query:    3 ISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 198
            I +  ++  K NE G +   K R+VA G  QI  + +  +SS  P+AA+ + V++  T K  +L H D ++AYI A + +EI +  PE      G V ++++A+YGL  +GR W  +    L    +EQ   DPC+F K++DGE V +IV+Y+DD++++     + +EL   L +   +K +GE   + GC I  D
Sbjct:  310 IGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFQKVVDGEVVGLIVIYVDDIIVAADEG-EPEELFASLNKKFPVKDLGECTCYDGCAIAMD 504          
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A5N5I5B1_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5I5B1_9ROSA)

HSP 1 Score: 124 bits (312), Expect = 1.960e-29
Identity = 70/196 (35.71%), Postives = 112/196 (57.14%), Query Frame = 0
Query:    2 IISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEF--PGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHI 195
            IIS+  +YK K N DG+ ++ K RLVAHG  Q + L Y E  SP     T +++L+  T   W LR  D + A++   + +++ ++ P+ + +   PG V +L K++YGL  A R W+ K T    A  F+ S +D  LF KI DG  + ++++Y+DD++++   S K+  ++ DL    KLK +G   Y LG HI
Sbjct:  819 IISSKWVYKVKKNPDGSTSRFKARLVAHGYTQEQGLDYSETFSPVVRHTTVRLILALATQFSWSLRQLDIKNAFLHGDLEEDVYMKQPQGFVDATCPGYVCKLVKSLYGLKQAPRAWNSKFTSYFPAVGFQSSFSDSSLFVKI-DGSDIILLLLYVDDIILTGSDSTKIQSVIDDLAGVFKLKDMGRLTYFLGLHI 1013          
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.110e-29
Identity = 65/187 (34.76%), Postives = 106/187 (56.68%), Query Frame = 0
Query:   12 KMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 198
            K NE G +  +K R+VA    QI  + +  +SS  P+AA+ + V++  T K  +L H D ++AYI A + +E  +  PE      G V ++++A+YGL  +GR W  +    L    +EQ   DPC+F K++DGE V +IV+Y+DD+L++     + +EL   L +   +K +GE  ++ GC I  D
Sbjct:   70 KTNEKGLIVDNKARMVARVFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIESEYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEG-EREELFASLNKKFPVKDLGECTWYDGCAIAMD 255          
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 7.920e-29
Identity = 62/173 (35.84%), Postives = 101/173 (58.38%), Query Frame = 0
Query:   26 LVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 198
            +VA G  QI  + +R +SS  P+AA+ + V++  T K  +L H D ++AYI A + +EI +  PE      G V ++++A+YGL  +GR W  +    L    +EQ   DPC+F K++DGE V +IV+Y+DD+L++     + +EL   L +   +K +GE  ++ GC I  D
Sbjct:    1 MVARGFSQIPGIDFRHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDR-EELFASLNKKFPVKDLGECTWYDGCAIVMD 172          
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.030e-28
Identity = 64/196 (32.65%), Postives = 109/196 (55.61%), Query Frame = 0
Query:    3 ISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 198
            I +  ++  K NE G +   K R++A G  QI  + +  + S  P+AA+ + V++  T    +L H D ++AYI A + +E  +  PE Y    G V ++++A+YGL  +GR W  +    L    +EQ   DPC+F K++DGE V++IV+Y+DD+L+      + +EL   L +   ++ +GE  ++ GC I  D
Sbjct:   27 IGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKLAHWDVKQAYIHAKLKEETCLRFPEGYGNMSGKVVKVERALYGLKQSGREWGFEAAGALIENGYEQCRVDPCVFRKVVDGEVVSLIVIYVDDILVVADEG-EREELFASLNKKFPVESLGEYTWYDGCAIAMD 221          
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.570e-28
Identity = 66/196 (33.67%), Postives = 110/196 (56.12%), Query Frame = 0
Query:    3 ISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAATTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVGRLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAVIVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRD 198
            I +  ++  K N  G +   K R+VA G  QI  + +  +SS  P+AA+ + V++  T K  +L H D ++AYI A + +EI + +PE      G V ++++A+YGL  +GR W  ++   L     EQ   DPC+F K++DGE V +IV+Y+D++L++     + +EL   L +   +K +GE  +  GC I  D
Sbjct:  328 IGSKWVFSSKTNGKGLIVDFKARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVAADEG-EREELFASLNKKFPVKYMGECTWFDGCAIAMD 522          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11928.1230.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF18_9PHAE1.300e-3034.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY81_9PHAE1.550e-3035.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE2.960e-3034.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE4.010e-3034.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZ24_9PHAE1.270e-2934.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N5I5B1_9ROSA1.960e-2935.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1G1_9PHAE6.110e-2934.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE7.920e-2935.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4A4_9PHAE1.030e-2832.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE1.570e-2833.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..198
e-value: 1.1E-32
score: 113.7
NoneNo IPR availablePANTHERPTHR11439:SF267coord: 7..195
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 39..196
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 7..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11928contigH-paniculata_contig11928:5985..6590 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11928.1230.1mRNA_H-paniculata_contig11928.1230.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11928 5985..6590 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11928.1230.1 ID=prot_H-paniculata_contig11928.1230.1|Name=mRNA_H-paniculata_contig11928.1230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
MIISTMMLYKRKMNEDGNVAKHKRRLVAHGNRQIKNLHYREASSPAPAAA
TTQMVLSATTVKDWELRHADFERAYIQAPIYQEILIEIPEEYWEFPGAVG
RLDKAIYGLVLAGRCWHMKITYDLKARRFEQSHADPCLFSKIMDGEAVAV
IVVYMDDLLISTKGSVKMDELLVDLTEDNKLKGVGEAKYHLGCHITRDRQ
R*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like