prot_H-paniculata_contig5038.12289.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig5038.12289.1
Unique Name	prot_H-paniculata_contig5038.12289.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	103

Homology

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BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE)

HSP 1 Score: 94.0 bits (232), Expect = 1.230e-20
Identity = 47/100 (47.00%), Postives = 58/100 (58.00%), Query Frame = 0

Query:    1 MATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENK 100
            MA   +   N+ + +WAEA  +A Y  N   T+P    TPY  W      L H+RVFGC AY   Q Q+RRKLDDKA  G+FLGY+  S  YRIY  +NK
Sbjct:  121 MARCLLSDANLSQRFWAEAAMTATYLQNRLPTKPKRK-TPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLGYDYRSKGYRIYLGDNK 219

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BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A2R7WAG4_ONCFA (Integrase catalytic domain-containing protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7WAG4_ONCFA)

HSP 1 Score: 94.0 bits (232), Expect = 3.170e-20
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 0

Query:    6 MITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 102
            +I + + + +WAEAV +AVY +N        G TPYE W  +  K+ HLR FGC   V   SQ+R+KLD K   G+F+GY  DS SYRIY +  K V
Sbjct:  573 LIESKLDKRFWAEAVNTAVYTINFTGNSSVKGKTPYELWFNKPIKIDHLREFGCRVSVHIPSQKRKKLDPKGQEGIFVGYETDSKSYRIYIKGQKEV 669

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BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: Q7G6A8_ORYSJ (Os10g0130700 protein n=3 Tax=Oryza sativa TaxID=4530 RepID=Q7G6A8_ORYSJ)

HSP 1 Score: 90.5 bits (223), Expect = 5.370e-19
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 0

Query:   11 MGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYN 96
            M   +W EAV +AVY LN + T+  NG TP+E WHG    + HLRVFGC  YV       RKLDD+    VF+GY + S +YR+Y+
Sbjct:  700 MPACFWGEAVVAAVYVLNRSPTKALNGVTPHEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYD 785

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BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY)

HSP 1 Score: 90.5 bits (223), Expect = 5.380e-19
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 0

Query:   13 RTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 102
            R +WAEAVR AVY LN   T+     TP E W G+   + HL++FGC AY     Q R+KLDD+    +F+GY+E S +YR+YN   K +
Sbjct:  469 RNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKI 558

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BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY)

HSP 1 Score: 90.5 bits (223), Expect = 5.400e-19
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 0

Query:   13 RTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 102
            R +WAEAVR AVY LN   T+     TP E W G+   + HL++FGC AY     Q R+KLDD+    +F+GY+E S +YR+YN   K +
Sbjct:  411 RNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKI 500

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BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 90.5 bits (223), Expect = 5.420e-19
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 0

Query:   13 RTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 102
            R +WAEAVR AVY LN   T+     TP E W G+   + HL++FGC AY     Q R+KLDD+    +F+GY+E S +YR+YN   K +
Sbjct: 1437 RNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKI 1526

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BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: Q7XTU6_ORYSJ (OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XTU6_ORYSJ)

HSP 1 Score: 90.1 bits (222), Expect = 7.330e-19
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 0

Query:   15 YWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYN 96
            +W EAV +AVY LN + T+  +G TPYE WHG    + HLRVFGC  YV       RKLDD+    VF+GY + S +YR+Y+
Sbjct:  704 FWGEAVVAAVYVLNRSPTKALDGVTPYEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYD 785

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BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: UPI0009047AD4 (uncharacterized protein LOC109237395 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009047AD4)

HSP 1 Score: 88.6 bits (218), Expect = 7.990e-19
Identity = 44/102 (43.14%), Postives = 60/102 (58.82%), Query Frame = 0

Query:    1 MATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 102
            MA + + + NM + +WAEAV  AVY  N   T+   G TP E W G   K+ HLRVFG  A      ++R KLDDK+   VF+GY++ S  Y++YN +N  V
Sbjct:  115 MARSMLKSKNMPKEFWAEAVACAVYLSNRCHTKSVRGKTPQEAWSGFKPKVAHLRVFGSIADAHVSDEKRSKLDDKSERYVFIGYDQSSKGYKLYNPKNGKV 216

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BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A151S498_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S498_CAJCA)

HSP 1 Score: 88.6 bits (218), Expect = 9.300e-19
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 0

Query:   13 RTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 102
            +++WAEAV +++Y LN   T+   G  P+E WHG    + HL+VFGC         +R KLD K+  GVFLGYN +S  YRIYN  +K +
Sbjct:    1 KSFWAEAVNTSIYLLNLLPTKALKGKIPFEAWHGRKPSMEHLKVFGCVL-CSCSRMKRDKLDQKSKVGVFLGYNNNSKGYRIYNPTSKKI 89

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BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: UPI000E1C253E (uncharacterized protein LOC112939069 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI000E1C253E)

HSP 1 Score: 89.7 bits (221), Expect = 9.870e-19
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 0

Query:    1 MATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 102
            MA + +    M +++WAEAV +AVY LN + T+     TP+E W+G+   + H+RVFGC  Y    +Q+R K D+K+   +F+GY +    YR+YN E K +
Sbjct:  394 MANSMLQDKGMPKSFWAEAVNTAVYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKI 495

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A4Y2LAF7_ARAVE	1.230e-20	47.00	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A2R7WAG4_ONCFA	3.170e-20	45.36	Integrase catalytic domain-containing protein n=1 ...	[more]
Q7G6A8_ORYSJ	5.370e-19	47.67	Os10g0130700 protein n=3 Tax=Oryza sativa TaxID=45...	[more]
A0A6A3C4D2_HIBSY	5.380e-19	45.56	FAD-binding Berberine family protein n=1 Tax=Hibis...	[more]
A0A6A3ACL1_HIBSY	5.400e-19	45.56	Putative cyclic nucleotide-gated ion channel 8 n=1...	[more]
A0A6A2WXP0_HIBSY	5.420e-19	45.56	Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10...	[more]
Q7XTU6_ORYSJ	7.330e-19	48.78	OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subs...	[more]
UPI0009047AD4	7.990e-19	43.14	uncharacterized protein LOC109237395 n=1 Tax=Nicot...	[more]
A0A151S498_CAJCA	9.300e-19	44.44	Retrovirus-related Pol polyprotein from transposon...	[more]
UPI000E1C253E	9.870e-19	39.22	uncharacterized protein LOC112939069 n=1 Tax=Oryza...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 10..100
None	No IPR available	PANTHER	PTHR11439:SF265		coord: 10..100
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 10..48

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig5038	contig	H-paniculata_contig5038:12410..12718 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig5038.12289.1	mRNA_H-paniculata_contig5038.12289.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig5038 12410..13015 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig5038.12289.1 ID=prot_H-paniculata_contig5038.12289.1|Name=mRNA_H-paniculata_contig5038.12289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQK
LYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENK
SV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf