mRNA_H-paniculata_contig5038.12289.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A2H9ZU53_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZU53_9ASPA) HSP 1 Score: 166 bits (419), Expect = 1.970e-45 Identity = 87/201 (43.28%), Postives = 125/201 (62.19%), Query Frame = 1
Query: 1 SFGGCRFAIIFVDDYSRMRKVYTLR*KSEVLWALKQFERDLARANGLRIKRLRSDQEEGYTGKPFRQFCAENGIKQEFSAAYTQQQSGVAERRWRSIFEMATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 603
S G R+ I+F+DDY+RM VY L+ KSE L A K F+ + R +G IK LR+D+ + F+ FC ENGI +E +A YT +Q+GVAER+ R+I EMA + + + +WAE+V +AVY LN + T+ T YE W G ++ HL++FGC AYV S R KL+DK+ +F+GY S +YR+YN +K +
Sbjct: 199 SLSGSRYFILFIDDYTRMNWVYFLKNKSEALEAFKIFKAFVERQSGYFIKVLRTDRGGEFLSHEFKAFCEENGIHRELTAPYTPEQNGVAERKNRTIVEMARSLLKAKGIPNQFWAESVATAVYLLNISPTKAILNRTLYEVWKGRKSRISHLKIFGCIAYVYVNSHDRHKLEDKSEKCIFIGYCPQSKAYRLYNPCSKKL 399
BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY) HSP 1 Score: 168 bits (425), Expect = 1.400e-44 Identity = 87/201 (43.28%), Postives = 125/201 (62.19%), Query Frame = 1
Query: 1 SFGGCRFAIIFVDDYSRMRKVYTLR*KSEVLWALKQFERDLARANGLRIKRLRSDQEEGYTGKPFRQFCAENGIKQEFSAAYTQQQSGVAERRWRSIFEMATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 603
S GG R+ + F+DD+SR +Y L+ KSE L L++F+ + +G +K LRSD+ YT K F +FC E+GI + +A YT QQ+GVAER+ R+I +MA + + + R +WAEAVR AVY LN T+ TP E W G+ + HL++FGC AY Q R+KLDD+ +F+GY+E S +YR+YN K +
Sbjct: 300 SLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKI 500
BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU) HSP 1 Score: 166 bits (421), Expect = 3.920e-44 Identity = 85/201 (42.29%), Postives = 124/201 (61.69%), Query Frame = 1
Query: 1 SFGGCRFAIIFVDDYSRMRKVYTLR*KSEVLWALKQFERDLARANGLRIKRLRSDQEEGYTGKPFRQFCAENGIKQEFSAAYTQQQSGVAERRWRSIFEMATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 603
SF R+ I+FVDD+SRM VY L KSE KQF+ +G +K LR+D+ +T F ++C NGIK+E +A YT QQ+GVAERR R+I EMA + + ++ T+WAEA+ +AV+ LN + T+ TP+E WH K+ ++FGCTAY SQ+R K D+K +F+GY++ S +YR+ + KS+
Sbjct: 198 SFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSL 398
BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU) HSP 1 Score: 166 bits (421), Expect = 4.670e-44 Identity = 85/201 (42.29%), Postives = 124/201 (61.69%), Query Frame = 1
Query: 1 SFGGCRFAIIFVDDYSRMRKVYTLR*KSEVLWALKQFERDLARANGLRIKRLRSDQEEGYTGKPFRQFCAENGIKQEFSAAYTQQQSGVAERRWRSIFEMATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 603
SF R+ I+FVDD+SRM VY L KSE KQF+ +G +K LR+D+ +T F ++C NGIK+E +A YT QQ+GVAERR R+I EMA + + ++ T+WAEA+ +AV+ LN + T+ TP+E WH K+ ++FGCTAY SQ+R K D+K +F+GY++ S +YR+ + KS+
Sbjct: 435 SFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSL 635
BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY) HSP 1 Score: 166 bits (421), Expect = 4.880e-44 Identity = 86/201 (42.79%), Postives = 124/201 (61.69%), Query Frame = 1
Query: 1 SFGGCRFAIIFVDDYSRMRKVYTLR*KSEVLWALKQFERDLARANGLRIKRLRSDQEEGYTGKPFRQFCAENGIKQEFSAAYTQQQSGVAERRWRSIFEMATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 603
S GG R+ + F+DD+SR +Y L+ KSE L L++F+ + +G +K LRSD+ YT K F +FC E+GI + + YT QQ+GVAER+ R+I +MA + + + R +WAEAVR AVY LN T+ TP E W G+ + HL++FGC AY Q R+KLDD+ +F+GY+E S +YR+YN K +
Sbjct: 1326 SLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKI 1526
BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY) HSP 1 Score: 166 bits (420), Expect = 6.360e-44 Identity = 86/201 (42.79%), Postives = 123/201 (61.19%), Query Frame = 1
Query: 1 SFGGCRFAIIFVDDYSRMRKVYTLR*KSEVLWALKQFERDLARANGLRIKRLRSDQEEGYTGKPFRQFCAENGIKQEFSAAYTQQQSGVAERRWRSIFEMATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 603
S GG R+ + F+DD+SR +Y L+ KSE L LK+F+ + +G +K LRSD+ YT K F +FC E+GI + +A YT QQ+GVAER+ R+I +MA + + + R +WAEAVR AVY LN T+ TP E W G+ + H ++FGC AY R+KLDD+ +F+GY+E S +YR+YN K +
Sbjct: 405 SLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKI 605
BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A068B703_GOSBA (Polyprotein n=5 Tax=Gossypium TaxID=3633 RepID=A0A068B703_GOSBA) HSP 1 Score: 166 bits (419), Expect = 8.780e-44 Identity = 86/201 (42.79%), Postives = 125/201 (62.19%), Query Frame = 1
Query: 1 SFGGCRFAIIFVDDYSRMRKVYTLR*KSEVLWALKQFERDLARANGLRIKRLRSDQEEGYTGKPFRQFCAENGIKQEFSAAYTQQQSGVAERRWRSIFEMATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 603
S GG R+ + F+DDYSR VY L+ KSE L K+F+ + + +G +K LRSD+ YT K + FC ++GI + +A T QQ+GVAER+ R+I +MA + + ++ RT+WAEAV AVY LN T+ TP E W G ++ HL++FGC AY QQR+KLDD+ +F+GY++ S +YR+YN K +
Sbjct: 559 SLGGNRYYLTFIDDYSRKCWVYFLKAKSEALEKFKEFKAMVEKQSGRYLKILRSDRGGEYTAKLYESFCKDHGIIHQLTARRTPQQNGVAERKNRTILDMARSMIKGKHLPRTFWAEAVECAVYLLNQCPTKSVRHKTPEEAWSGHKPRVGHLKIFGCIAYAHVPEQQRKKLDDRGEKCIFIGYDKRSKAYRLYNPLTKKL 759
BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: UPI001CC6DD69 (uncharacterized protein LOC110630572 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC6DD69) HSP 1 Score: 164 bits (415), Expect = 3.060e-43 Identity = 79/195 (40.51%), Postives = 127/195 (65.13%), Query Frame = 1
Query: 1 SFGGCRFAIIFVDDYSRMRKVYTLR*KSEVLWALKQFERDLARANGLRIKRLRSDQEEGYTGKPFRQFCAENGIKQEFSAAYTQQQSGVAERRWRSIFEMATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYN 585
S G R+ ++FVDDYSRM V+ L+ KSEVL K+F + + +G +K LR+D+ + F + C + GI+++ +A+YT QQ+GVAER+ RS+ EMA + + N+ +++WAEA+ +A Y LN + T + TP+E W+G K+ H ++FGC AYV+ SQ+R KLD+ + +F+GY+ ++ YR Y+
Sbjct: 626 SLNGSRYFVVFVDDYSRMTWVFFLKNKSEVLPTFKKFRSLIEKQSGNAVKILRTDRGGEFVSAEFDKLCEDFGIQRQLTASYTPQQNGVAERKIRSLVEMAKSMLKAKNLPKSFWAEAIHTAAYILNRSSTSALSNQTPFEAWNGWKPKVKHFKIFGCVAYVLVPSQKRGKLDENSVRCIFVGYSMETKGYRFYD 820
BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A151TGQ2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TGQ2_CAJCA) HSP 1 Score: 162 bits (411), Expect = 9.940e-43 Identity = 81/201 (40.30%), Postives = 128/201 (63.68%), Query Frame = 1
Query: 1 SFGGCRFAIIFVDDYSRMRKVYTLR*KSEVLWALKQFERDLARANGLRIKRLRSDQEEGYTGKPFRQFCAENGIKQEFSAAYTQQQSGVAERRWRSIFEMATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYNRENKSV 603
S G + ++F+DD+SR VY L+ KSEV K+F+ + + +GL IK LRSD+ +T K F+++C +NGI+++ + + QQ+GVAER+ R+I EMA + + + + + +WAEAV AVY N + TR +G TP E W G + HLRVFG A+V ++R KLDDK+ +F+GY+ +S Y++YN +++
Sbjct: 474 SLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKT 674
BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI) HSP 1 Score: 161 bits (408), Expect = 1.020e-42 Identity = 78/193 (40.41%), Postives = 123/193 (63.73%), Query Frame = 1
Query: 7 GGCRFAIIFVDDYSRMRKVYTLR*KSEVLWALKQFERDLARANGLRIKRLRSDQEEGYTGKPFRQFCAENGIKQEFSAAYTQQQSGVAERRWRSIFEMATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKLYHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYNEDSLSYRIYN 585
GG ++ ++FVDDYSRM VY L+ KSE +F+ + + G +K LR+D+ +T F Q+C ++GI +E +A YT +Q+GVAER+ R+I EMA + + + + +WAEAV +AVY +N + T+ TPYE W G+ + HL++FGC YV+ + +R KL++K+ +F+GY S +YR+YN
Sbjct: 366 GGSKYFLLFVDDYSRMSWVYFLKFKSEAFGQFFKFKALVEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLINANERHKLEEKSIKCIFIGYCSQSKAYRVYN 558 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5038.12289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5038.12289.1 >prot_H-paniculata_contig5038.12289.1 ID=prot_H-paniculata_contig5038.12289.1|Name=mRNA_H-paniculata_contig5038.12289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp MATAGMITTNMGRTYWAEAVRSAVYCLNHALTRPHNGGTPYEKWHGETQKback to top mRNA from alignment at H-paniculata_contig5038:12410..13015- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5038.12289.1 ID=mRNA_H-paniculata_contig5038.12289.1|Name=mRNA_H-paniculata_contig5038.12289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=606bp|location=Sequence derived from alignment at H-paniculata_contig5038:12410..13015- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5038:12410..13015- >mRNA_H-paniculata_contig5038.12289.1 ID=mRNA_H-paniculata_contig5038.12289.1|Name=mRNA_H-paniculata_contig5038.12289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig5038:12410..13015- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |