mRNA_H-paniculata_contig5036.12288.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: Q7Y1M7_ORYSJ (Putative polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7Y1M7_ORYSJ) HSP 1 Score: 61.6 bits (148), Expect = 1.440e-9 Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
RLVA+GFRQI+GV Y E +SP + SIR++ A A D E+ D + AFL ++DE+VY+
Sbjct: 723 RLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYM 784
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A6H5K2W4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2W4_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 1.540e-9 Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
RLVA+GF QI V Y SP P+ ASI+++ A K L H+D EQA+ A +DEEV++
Sbjct: 49 RLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVEQAYTHATLDEEVFL 110
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: Q8TFJ1_PICAN (Polyprotein n=7 Tax=Ogataea TaxID=461281 RepID=Q8TFJ1_PICAN) HSP 1 Score: 60.8 bits (146), Expect = 2.710e-9 Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 1
Query: 1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
RLV QGFRQIEG+ YTE +SP S+R L A A K + D AFL D+ EE+Y+
Sbjct: 975 RLVVQGFRQIEGIDYTETFSPVVRYESVRTLLALAAQKHMVIHQMDVTTAFLNGDLAEEIYM 1036
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A177WMM1_BATDL (Uncharacterized protein n=4 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WMM1_BATDL) HSP 1 Score: 60.8 bits (146), Expect = 2.710e-9 Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
RLVA+GF Q+ G+ + E Y+P S+R++ A A D E+ H DA AFL IDEE+YI
Sbjct: 1066 RLVAKGFAQVPGIDFHETYAPVLKFTSLRIILALAAIYDWEVDHTDANNAFLNGTIDEELYI 1127
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A224X581_9HEMI (Putative polyprotein (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224X581_9HEMI) HSP 1 Score: 59.7 bits (143), Expect = 6.910e-9 Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
RLVAQGF Q GVH++E ++P ++S+R+L A A D ++ FD AFL +++EE+Y+
Sbjct: 859 RLVAQGFSQKPGVHFSETFAPVCRLSSVRLLAALAAHHDMKIHQFDITAAFLNGELEEEIYM 920
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A4Y1RDR4_PRUDU (RmlC-like cupins superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RDR4_PRUDU) HSP 1 Score: 58.5 bits (140), Expect = 1.750e-8 Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
RLVA+G+ QIEG+ Y+E +SPT + ++R L + A++ + D + AFL D+ EEVY+
Sbjct: 345 RLVAKGYTQIEGIDYSETFSPTVKITTLRYLLSIATARNWFIHQLDVQNAFLHGDLQEEVYM 406
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: UPI00053C4CC6 (uncharacterized protein LOC104804180 isoform X5 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C4CC6) HSP 1 Score: 58.5 bits (140), Expect = 1.760e-8 Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
RLVA+G+ Q+EGV ++E +SP M ++R+L A A + + D AFL D+DEE+Y+
Sbjct: 667 RLVAKGYTQLEGVDFSETFSPVAKMTTVRVLLALAAKYNWLINQMDVSNAFLNGDLDEEIYM 728
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: UPI00053C0F12 (uncharacterized protein LOC104804180 isoform X4 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C0F12) HSP 1 Score: 58.5 bits (140), Expect = 1.760e-8 Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
RLVA+G+ Q+EGV ++E +SP M ++R+L A A + + D AFL D+DEE+Y+
Sbjct: 721 RLVAKGYTQLEGVDFSETFSPVAKMTTVRVLLALAAKYNWLINQMDVSNAFLNGDLDEEIYM 782
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: UPI00053C1D90 (uncharacterized protein LOC104804180 isoform X1 n=3 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C1D90) HSP 1 Score: 58.5 bits (140), Expect = 1.770e-8 Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
RLVA+G+ Q+EGV ++E +SP M ++R+L A A + + D AFL D+DEE+Y+
Sbjct: 1056 RLVAKGYTQLEGVDFSETFSPVAKMTTVRVLLALAAKYNWLINQMDVSNAFLNGDLDEEIYM 1117
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A2Z6NQR4_TRISU (Integrase catalytic domain-containing protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NQR4_TRISU) HSP 1 Score: 58.5 bits (140), Expect = 1.770e-8 Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
RLVA+G+ QIEGV +++ +SP M +IR + A + K+ + D + AFL D+DE VY+
Sbjct: 993 RLVAKGYNQIEGVDFSQTFSPVAKMTTIRTVLAIASIKNWHIHQLDVDNAFLHGDLDENVYM 1054 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5036.12288.1 >prot_H-paniculata_contig5036.12288.1 ID=prot_H-paniculata_contig5036.12288.1|Name=mRNA_H-paniculata_contig5036.12288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAback to top mRNA from alignment at H-paniculata_contig5036:11780..11965+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5036.12288.1 ID=mRNA_H-paniculata_contig5036.12288.1|Name=mRNA_H-paniculata_contig5036.12288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig5036:11780..11965+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5036:11780..11965+ >mRNA_H-paniculata_contig5036.12288.1 ID=mRNA_H-paniculata_contig5036.12288.1|Name=mRNA_H-paniculata_contig5036.12288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig5036:11780..11965+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |