mRNA_H-paniculata_contig5036.12288.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5036.12288.1
Unique NamemRNA_H-paniculata_contig5036.12288.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: Q7Y1M7_ORYSJ (Putative polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7Y1M7_ORYSJ)

HSP 1 Score: 61.6 bits (148), Expect = 1.440e-9
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
            RLVA+GFRQI+GV Y E +SP   + SIR++ A  A  D E+   D + AFL  ++DE+VY+
Sbjct:  723 RLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYM 784          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A6H5K2W4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2W4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.540e-9
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
            RLVA+GF QI  V Y    SP P+ ASI+++ A    K   L H+D EQA+  A +DEEV++
Sbjct:   49 RLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVEQAYTHATLDEEVFL 110          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: Q8TFJ1_PICAN (Polyprotein n=7 Tax=Ogataea TaxID=461281 RepID=Q8TFJ1_PICAN)

HSP 1 Score: 60.8 bits (146), Expect = 2.710e-9
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
            RLV QGFRQIEG+ YTE +SP     S+R L A  A K   +   D   AFL  D+ EE+Y+
Sbjct:  975 RLVVQGFRQIEGIDYTETFSPVVRYESVRTLLALAAQKHMVIHQMDVTTAFLNGDLAEEIYM 1036          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A177WMM1_BATDL (Uncharacterized protein n=4 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WMM1_BATDL)

HSP 1 Score: 60.8 bits (146), Expect = 2.710e-9
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
            RLVA+GF Q+ G+ + E Y+P     S+R++ A  A  D E+ H DA  AFL   IDEE+YI
Sbjct: 1066 RLVAKGFAQVPGIDFHETYAPVLKFTSLRIILALAAIYDWEVDHTDANNAFLNGTIDEELYI 1127          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A224X581_9HEMI (Putative polyprotein (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224X581_9HEMI)

HSP 1 Score: 59.7 bits (143), Expect = 6.910e-9
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
            RLVAQGF Q  GVH++E ++P   ++S+R+L A  A  D ++  FD   AFL  +++EE+Y+
Sbjct:  859 RLVAQGFSQKPGVHFSETFAPVCRLSSVRLLAALAAHHDMKIHQFDITAAFLNGELEEEIYM 920          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A4Y1RDR4_PRUDU (RmlC-like cupins superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RDR4_PRUDU)

HSP 1 Score: 58.5 bits (140), Expect = 1.750e-8
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
            RLVA+G+ QIEG+ Y+E +SPT  + ++R L +   A++  +   D + AFL  D+ EEVY+
Sbjct:  345 RLVAKGYTQIEGIDYSETFSPTVKITTLRYLLSIATARNWFIHQLDVQNAFLHGDLQEEVYM 406          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: UPI00053C4CC6 (uncharacterized protein LOC104804180 isoform X5 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C4CC6)

HSP 1 Score: 58.5 bits (140), Expect = 1.760e-8
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
            RLVA+G+ Q+EGV ++E +SP   M ++R+L A  A  +  +   D   AFL  D+DEE+Y+
Sbjct:  667 RLVAKGYTQLEGVDFSETFSPVAKMTTVRVLLALAAKYNWLINQMDVSNAFLNGDLDEEIYM 728          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: UPI00053C0F12 (uncharacterized protein LOC104804180 isoform X4 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C0F12)

HSP 1 Score: 58.5 bits (140), Expect = 1.760e-8
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
            RLVA+G+ Q+EGV ++E +SP   M ++R+L A  A  +  +   D   AFL  D+DEE+Y+
Sbjct:  721 RLVAKGYTQLEGVDFSETFSPVAKMTTVRVLLALAAKYNWLINQMDVSNAFLNGDLDEEIYM 782          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: UPI00053C1D90 (uncharacterized protein LOC104804180 isoform X1 n=3 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C1D90)

HSP 1 Score: 58.5 bits (140), Expect = 1.770e-8
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
            RLVA+G+ Q+EGV ++E +SP   M ++R+L A  A  +  +   D   AFL  D+DEE+Y+
Sbjct: 1056 RLVAKGYTQLEGVDFSETFSPVAKMTTVRVLLALAAKYNWLINQMDVSNAFLNGDLDEEIYM 1117          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A2Z6NQR4_TRISU (Integrase catalytic domain-containing protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NQR4_TRISU)

HSP 1 Score: 58.5 bits (140), Expect = 1.770e-8
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 186
            RLVA+G+ QIEGV +++ +SP   M +IR + A  + K+  +   D + AFL  D+DE VY+
Sbjct:  993 RLVAKGYNQIEGVDFSQTFSPVAKMTTIRTVLAIASIKNWHIHQLDVDNAFLHGDLDENVYM 1054          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q7Y1M7_ORYSJ1.440e-948.39Putative polyprotein n=2 Tax=Oryza sativa subsp. j... [more]
A0A6H5K2W4_9PHAE1.540e-946.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q8TFJ1_PICAN2.710e-948.39Polyprotein n=7 Tax=Ogataea TaxID=461281 RepID=Q8T... [more]
A0A177WMM1_BATDL2.710e-946.77Uncharacterized protein n=4 Tax=Batrachochytrium d... [more]
A0A224X581_9HEMI6.910e-943.55Putative polyprotein (Fragment) n=1 Tax=Panstrongy... [more]
A0A4Y1RDR4_PRUDU1.750e-841.94RmlC-like cupins superfamily protein n=1 Tax=Prunu... [more]
UPI00053C4CC61.760e-841.94uncharacterized protein LOC104804180 isoform X5 n=... [more]
UPI00053C0F121.760e-841.94uncharacterized protein LOC104804180 isoform X4 n=... [more]
UPI00053C1D901.770e-841.94uncharacterized protein LOC104804180 isoform X1 n=... [more]
A0A2Z6NQR4_TRISU1.770e-841.94Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5036contigH-paniculata_contig5036:11780..11965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.4
Seed ortholog evalue8.6e-08
Seed eggNOG ortholog3711.Bra008452.1-P
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GHHH@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930479.5692086-CDS-H-paniculata_contig5036:11779..119651622930479.5692086-CDS-H-paniculata_contig5036:11779..11965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5036 11780..11965 +
1691481310.4972932-CDS-H-paniculata_contig5036:11779..119651691481310.4972932-CDS-H-paniculata_contig5036:11779..11965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5036 11780..11965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5036.12288.1prot_H-paniculata_contig5036.12288.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5036 11780..11965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5036.12288.1

>prot_H-paniculata_contig5036.12288.1 ID=prot_H-paniculata_contig5036.12288.1|Name=mRNA_H-paniculata_contig5036.12288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQA
FLKADIDEEVYI
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mRNA from alignment at H-paniculata_contig5036:11780..11965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5036.12288.1 ID=mRNA_H-paniculata_contig5036.12288.1|Name=mRNA_H-paniculata_contig5036.12288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig5036:11780..11965+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACTTGTCGCTCAGGGCTTCCGGCAGATCGAAGGGGTACACTACACCGA GAAGTACTCACCCACGCCAGCGATGGCGTCCATCCGGATGCTCTTCGCGA CCACAGCGGCAAAGGACGGAGAGCTGCAACATTTCGACGCAGAACAGGCG TTTCTGAAGGCGGACATTGACGAGGAGGTGTACATC
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Coding sequence (CDS) from alignment at H-paniculata_contig5036:11780..11965+

>mRNA_H-paniculata_contig5036.12288.1 ID=mRNA_H-paniculata_contig5036.12288.1|Name=mRNA_H-paniculata_contig5036.12288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig5036:11780..11965+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACTTGTCGCTCAGGGCTTCCGGCAGATCGAAGGGGTACACTACACCGA
GAAGTACTCACCCACGCCAGCGATGGCGTCCATCCGGATGCTCTTCGCGA
CCACAGCGGCAAAGGACGGAGAGCTGCAACATTTCGACGCAGAACAGGCG
TTTCTGAAGGCGGACATTGACGAGGAGGTGTACATCAGACTTGTCGCTCA
GGGCTTCCGGCAGATCGAAGGGGTACACTACACCGAGAAGTACTCACCCA
CGCCAGCGATGGCGTCCATCCGGATGCTCTTCGCGACCACAGCGGCAAAG
GACGGAGAGCTGCAACATTTCGACGCAGAACAGGCGTTTCTGAAGGCGGA
CATTGACGAGGAGGTGTACATC
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