mRNA_H-paniculata_contig50183.12264.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50183.12264.1
Unique NamemRNA_H-paniculata_contig50183.12264.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50183.12264.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.680e-6
Identity = 26/72 (36.11%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 WFGLIDKYQNSSKQRRRILMRQLGGTTKKQNQDPDVFLARVFLLRDELAHMGEEISEERLTDIVIEGLTDDY 216
            W  L  K+Q + + RRR L R+L   T +   DPD+F+  V+ L ++L  +G  +++E+L DI+++GL  +Y
Sbjct:  236 WKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEY 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50183.12264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE3.680e-636.11Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50183contigH-paniculata_contig50183:867..1148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930476.4196224-CDS-H-paniculata_contig50183:866..11481622930476.4196224-CDS-H-paniculata_contig50183:866..1148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50183 867..1148 -
1691481308.8295448-CDS-H-paniculata_contig50183:866..11481691481308.8295448-CDS-H-paniculata_contig50183:866..1148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50183 867..1148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50183.12264.1prot_H-paniculata_contig50183.12264.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50183 867..1148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50183.12264.1

>prot_H-paniculata_contig50183.12264.1 ID=prot_H-paniculata_contig50183.12264.1|Name=mRNA_H-paniculata_contig50183.12264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
WFGLIDKYQNSSKQRRRILMRQLGGTTKKQNQDPDVFLARVFLLRDELAH
MGEEISEERLTDIVIEGLTDDYEQVKYNAERDPEFSLSEIEVTL
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mRNA from alignment at H-paniculata_contig50183:867..1148-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50183.12264.1 ID=mRNA_H-paniculata_contig50183.12264.1|Name=mRNA_H-paniculata_contig50183.12264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=282bp|location=Sequence derived from alignment at H-paniculata_contig50183:867..1148- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTTTGGCCTGATTGACAAGTATCAGAATTCATCCAAGCAGAGACGCCG
TATATTAATGCGGCAGCTTGGCGGGACAACAAAGAAGCAAAACCAGGACC
CCGATGTATTTTTGGCCCGTGTTTTTCTGCTCAGGGATGAGCTAGCACAC
ATGGGCGAAGAAATATCGGAAGAACGATTGACCGATATCGTTATAGAAGG
ACTTACTGACGATTATGAGCAAGTGAAATATAATGCAGAGCGCGACCCCG
AGTTTAGCTTGAGCGAAATTGAGGTCACTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig50183:867..1148-

>mRNA_H-paniculata_contig50183.12264.1 ID=mRNA_H-paniculata_contig50183.12264.1|Name=mRNA_H-paniculata_contig50183.12264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig50183:867..1148- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTTTGGCCTGATTGACAAGTATCAGAATTCATCCAAGCAGAGACGCCG
TATATTAATGCGGCAGCTTGGCGGGACAACAAAGAAGCAAAACCAGGACC
CCGATGTATTTTTGGCCCGTGTTTTTCTGCTCAGGGATGAGCTAGCACAC
ATGGGCGAAGAAATATCGGAAGAACGATTGACCGATATCGTTATAGAAGG
ACTTACTGACGATTATGAGCAAGTGAAATATAATGCAGAGCGCGACCCCG
AGTTTAGCTTGAGCGAAATTGAGGTCACTCTGTGGTTTGGCCTGATTGAC
AAGTATCAGAATTCATCCAAGCAGAGACGCCGTATATTAATGCGGCAGCT
TGGCGGGACAACAAAGAAGCAAAACCAGGACCCCGATGTATTTTTGGCCC
GTGTTTTTCTGCTCAGGGATGAGCTAGCACACATGGGCGAAGAAATATCG
GAAGAACGATTGACCGATATCGTTATAGAAGGACTTACTGACGATTATGA
GCAAGTGAAATATAATGCAGAGCGCGACCCCGAGTTTAGCTTGAGCGAAA
TTGAGGTCACTCTG
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