prot_H-paniculata_contig50183.12264.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig50183.12264.1
Unique Nameprot_H-paniculata_contig50183.12264.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length94
Homology
[Close]
BLAST of mRNA_H-paniculata_contig50183.12264.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.680e-6
Identity = 26/72 (36.11%), Postives = 45/72 (62.50%), Query Frame = 0 
Query:    1 WFGLIDKYQNSSKQRRRILMRQLGGTTKKQNQDPDVFLARVFLLRDELAHMGEEISEERLTDIVIEGLTDDY 72
            W  L  K+Q + + RRR L R+L   T +   DPD+F+  V+ L ++L  +G  +++E+L DI+++GL  +Y
Sbjct:  236 WKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEY 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50183.12264.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE3.680e-636.11Integrase catalytic domain-containing protein n=1 ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..85
e-value: 2.3E-10
score: 40.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50183contigH-paniculata_contig50183:867..1148 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50183.12264.1mRNA_H-paniculata_contig50183.12264.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig50183 867..1148 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig50183.12264.1 ID=prot_H-paniculata_contig50183.12264.1|Name=mRNA_H-paniculata_contig50183.12264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
WFGLIDKYQNSSKQRRRILMRQLGGTTKKQNQDPDVFLARVFLLRDELAH
MGEEISEERLTDIVIEGLTDDYEQVKYNAERDPEFSLSEIEVTL
back to top