mRNA_H-paniculata_contig5010.12251.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: D7FNH5_ECTSI (Arf-GAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH5_ECTSI) HSP 1 Score: 143 bits (361), Expect = 1.230e-34 Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 3
Query: 12 DKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGNRMQGIGSDSSYNPASGGYGGAXXXXXXGVSSPGGLNADEIGGQIGQIGQKSMRFLSESFATLQTGVK 329
D+ MERL GETD+EYVARQ ALRG+ASARMRDKFGG NRMQG+GSDSSY+PASGGYGG XXXXXX + AD+IGGQIG +GQKSMRFLSESFATLQTGVK
Sbjct: 160 DQRGMERLAGETDSEYVARQTALRGEASARMRDKFGGSNRMQGLGSDSSYDPASGGYGGXXXXXXX-------MTADDIGGQIGVMGQKSMRFLSESFATLQTGVK 258
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A7S2R4M4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4M4_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 3.360e-12 Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 3
Query: 12 DKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGNRMQGIGSDSSYNPASGGYGGA 191
D ERL GE+DAEY+ARQ LR +A+ARMR KFGGG MQG+GSD+SYN +SGGYGGA
Sbjct: 168 DPNGKERLQGESDAEYIARQTRLRDEAAARMRQKFGGGG-MQGLGSDASYNASSGGYGGA 226
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A7S2V5A2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5A2_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 2.480e-11 Identity = 50/126 (39.68%), Postives = 70/126 (55.56%), Query Frame = 3
Query: 3 GGLDKASMERLPGETDAEYVARQKALRGQASARMRDKFGG-GNRMQGIGSDSSYNPASGGYGGAXXXXXXGVSSPGGLNADEIGGQIGQIGQKSMRFLSESFATLQTGVK-ASKSCRYLRGGMEVQ 374
G + +ERLPGE+D +Y+ RQKALR QA AR++ KFG G RMQGIGSD Y P S G S+ G D +G + +G K+M L+ + L +GV+ A++ R + E+Q
Sbjct: 142 GPVVGGGLERLPGESDEQYIDRQKALREQAKARLQAKFGANGGRMQGIGSDPGYRPPS----------ESGPSATGVPELDALGQNLSDLGGKTMGALTSGWGALSSGVQLATQKARDVVQDPELQ 257
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A1Z5KGV0_FISSO (ADP-ribosylation factor GTPase-activating protein 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGV0_FISSO) HSP 1 Score: 70.1 bits (170), Expect = 1.920e-9 Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 3
Query: 12 DKASMERLPGETDAEYVARQKALRGQASARMRDKFG------GGNRMQGIGSDSSYNPASGGY 182
D SMERLPGE++ +YVARQ LR +A ARM KFG G + MQGIGSD SYNP +GGY
Sbjct: 151 DPQSMERLPGESEQQYVARQTRLRDEARARMAAKFGNSGGGMGSSSMQGIGSDPSYNPRAGGY 213
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A7S3P2L1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P2L1_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 2.160e-9 Identity = 42/74 (56.76%), Postives = 46/74 (62.16%), Query Frame = 3
Query: 3 GGLDKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGN------------RMQGIGSDSSYNPASGGYGG 188
GG D MERL GETD +Y+ARQ LR +A ARM KFGG RMQGIGSD SYNP +GGYGG
Sbjct: 149 GGGDPNGMERLAGETDQQYIARQTRLREEARARMASKFGGSGMGXXXXXXXXXGRMQGIGSDPSYNP-NGGYGG 221
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A7S4JPG9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JPG9_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 9.240e-8 Identity = 39/73 (53.42%), Postives = 44/73 (60.27%), Query Frame = 3
Query: 3 GGLDKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGN-----------RMQGIGSDSSYNPASGGYGG 188
G D MERL GET+A+YVARQ LR +A ARM KFGGG RM G+GSD +Y P GGYGG
Sbjct: 152 GSNDPNGMERLAGETEAQYVARQTRLRNEAKARMAAKFGGGGGMGGMVSGXXXRMGGVGSDPNYRPG-GGYGG 223
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: F0Y3J3_AURAN (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3J3_AURAN) HSP 1 Score: 62.8 bits (151), Expect = 1.460e-7 Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 3
Query: 3 GGLDKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGNRMQGIGSDSSYNPASG 176
GG D E L GET+ +YVARQ+ L+ +A RMR KFGGG M G+GS+S YNPA+G
Sbjct: 152 GGGDTKGAEALKGETEDQYVARQRRLQAEARERMRAKFGGGG-MGGVGSNSDYNPATG 208
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A7S2CK86_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CK86_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.510e-7 Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 3
Query: 12 DKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGNRMQGIGSDSSYNPASG 176
D ERL GE+D EY+ARQ LR +A ARM KFGGG MQG+GSD+SY+ G
Sbjct: 54 DPNGKERLEGESDNEYIARQTKLRDEAKARMAAKFGGGG-MQGLGSDASYSAGGG 107
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A835Z255_9STRA (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z255_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.690e-7 Identity = 42/120 (35.00%), Postives = 57/120 (47.50%), Query Frame = 3
Query: 12 DKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGN--------------RMQGIGSDSSYNPASGGYGGAXXXXXXGVSSPGGLNADEIGGQIGQIGQKSMRFLSESFATLQTGVK 329
D MERL GE+D +Y+ARQ+ LR +A+ARMR+KFG G M GIGSD +YNP+ G IG K + F++ S ++L TGV+
Sbjct: 152 DPRGMERLAGESDKQYIARQRVLRDEAAARMRNKFGAGGFXXXXXXXXXXXXXXMAGIGSDPNYNPSRG--------------------XXXXXXXXXDIGSKGISFITSSLSSLTTGVQ 251
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A7S2HYT0_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYT0_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.600e-6 Identity = 36/71 (50.70%), Postives = 41/71 (57.75%), Query Frame = 3
Query: 6 GLDKASMERLPGETDAEYVARQKALRGQASARMRDKFGG----------GNRMQGIGSDSSYNPASGGYGG 188
G D MERL GET+ +YVARQ LR +A ARM KFGG G M G+GSD +YNP G GG
Sbjct: 39 GEDPNGMERLTGETEQQYVARQTRLREEARARMAAKFGGSGXXXXXXSGGRTMGGVGSDPNYNPHGGSMGG 109 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5010.12251.1 >prot_H-paniculata_contig5010.12251.1 ID=prot_H-paniculata_contig5010.12251.1|Name=mRNA_H-paniculata_contig5010.12251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp MERLPGETDAEYVARQKALRGQASARMRDKFGGGNRMQGIGSDSSYNPASback to top mRNA from alignment at H-paniculata_contig5010:10481..12649+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5010.12251.1 ID=mRNA_H-paniculata_contig5010.12251.1|Name=mRNA_H-paniculata_contig5010.12251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2169bp|location=Sequence derived from alignment at H-paniculata_contig5010:10481..12649+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5010:10481..12649+ >mRNA_H-paniculata_contig5010.12251.1 ID=mRNA_H-paniculata_contig5010.12251.1|Name=mRNA_H-paniculata_contig5010.12251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig5010:10481..12649+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |