mRNA_H-paniculata_contig5010.12251.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5010.12251.1
Unique NamemRNA_H-paniculata_contig5010.12251.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: D7FNH5_ECTSI (Arf-GAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH5_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.230e-34
Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 3
Query:   12 DKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGNRMQGIGSDSSYNPASGGYGGAXXXXXXGVSSPGGLNADEIGGQIGQIGQKSMRFLSESFATLQTGVK 329
            D+  MERL GETD+EYVARQ ALRG+ASARMRDKFGG NRMQG+GSDSSY+PASGGYGG XXXXXX       + AD+IGGQIG +GQKSMRFLSESFATLQTGVK
Sbjct:  160 DQRGMERLAGETDSEYVARQTALRGEASARMRDKFGGSNRMQGLGSDSSYDPASGGYGGXXXXXXX-------MTADDIGGQIGVMGQKSMRFLSESFATLQTGVK 258          
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A7S2R4M4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4M4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.360e-12
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 3
Query:   12 DKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGNRMQGIGSDSSYNPASGGYGGA 191
            D    ERL GE+DAEY+ARQ  LR +A+ARMR KFGGG  MQG+GSD+SYN +SGGYGGA
Sbjct:  168 DPNGKERLQGESDAEYIARQTRLRDEAAARMRQKFGGGG-MQGLGSDASYNASSGGYGGA 226          
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A7S2V5A2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5A2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.480e-11
Identity = 50/126 (39.68%), Postives = 70/126 (55.56%), Query Frame = 3
Query:    3 GGLDKASMERLPGETDAEYVARQKALRGQASARMRDKFGG-GNRMQGIGSDSSYNPASGGYGGAXXXXXXGVSSPGGLNADEIGGQIGQIGQKSMRFLSESFATLQTGVK-ASKSCRYLRGGMEVQ 374
            G +    +ERLPGE+D +Y+ RQKALR QA AR++ KFG  G RMQGIGSD  Y P S            G S+ G    D +G  +  +G K+M  L+  +  L +GV+ A++  R +    E+Q
Sbjct:  142 GPVVGGGLERLPGESDEQYIDRQKALREQAKARLQAKFGANGGRMQGIGSDPGYRPPS----------ESGPSATGVPELDALGQNLSDLGGKTMGALTSGWGALSSGVQLATQKARDVVQDPELQ 257          
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A1Z5KGV0_FISSO (ADP-ribosylation factor GTPase-activating protein 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGV0_FISSO)

HSP 1 Score: 70.1 bits (170), Expect = 1.920e-9
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 3
Query:   12 DKASMERLPGETDAEYVARQKALRGQASARMRDKFG------GGNRMQGIGSDSSYNPASGGY 182
            D  SMERLPGE++ +YVARQ  LR +A ARM  KFG      G + MQGIGSD SYNP +GGY
Sbjct:  151 DPQSMERLPGESEQQYVARQTRLRDEARARMAAKFGNSGGGMGSSSMQGIGSDPSYNPRAGGY 213          
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A7S3P2L1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P2L1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.160e-9
Identity = 42/74 (56.76%), Postives = 46/74 (62.16%), Query Frame = 3
Query:    3 GGLDKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGN------------RMQGIGSDSSYNPASGGYGG 188
            GG D   MERL GETD +Y+ARQ  LR +A ARM  KFGG              RMQGIGSD SYNP +GGYGG
Sbjct:  149 GGGDPNGMERLAGETDQQYIARQTRLREEARARMASKFGGSGMGXXXXXXXXXGRMQGIGSDPSYNP-NGGYGG 221          
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A7S4JPG9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JPG9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.240e-8
Identity = 39/73 (53.42%), Postives = 44/73 (60.27%), Query Frame = 3
Query:    3 GGLDKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGN-----------RMQGIGSDSSYNPASGGYGG 188
            G  D   MERL GET+A+YVARQ  LR +A ARM  KFGGG            RM G+GSD +Y P  GGYGG
Sbjct:  152 GSNDPNGMERLAGETEAQYVARQTRLRNEAKARMAAKFGGGGGMGGMVSGXXXRMGGVGSDPNYRPG-GGYGG 223          
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: F0Y3J3_AURAN (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3J3_AURAN)

HSP 1 Score: 62.8 bits (151), Expect = 1.460e-7
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 3
Query:    3 GGLDKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGNRMQGIGSDSSYNPASG 176
            GG D    E L GET+ +YVARQ+ L+ +A  RMR KFGGG  M G+GS+S YNPA+G
Sbjct:  152 GGGDTKGAEALKGETEDQYVARQRRLQAEARERMRAKFGGGG-MGGVGSNSDYNPATG 208          
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A7S2CK86_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CK86_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.510e-7
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 3
Query:   12 DKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGNRMQGIGSDSSYNPASG 176
            D    ERL GE+D EY+ARQ  LR +A ARM  KFGGG  MQG+GSD+SY+   G
Sbjct:   54 DPNGKERLEGESDNEYIARQTKLRDEAKARMAAKFGGGG-MQGLGSDASYSAGGG 107          
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A835Z255_9STRA (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z255_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.690e-7
Identity = 42/120 (35.00%), Postives = 57/120 (47.50%), Query Frame = 3
Query:   12 DKASMERLPGETDAEYVARQKALRGQASARMRDKFGGGN--------------RMQGIGSDSSYNPASGGYGGAXXXXXXGVSSPGGLNADEIGGQIGQIGQKSMRFLSESFATLQTGVK 329
            D   MERL GE+D +Y+ARQ+ LR +A+ARMR+KFG G                M GIGSD +YNP+ G                              IG K + F++ S ++L TGV+
Sbjct:  152 DPRGMERLAGESDKQYIARQRVLRDEAAARMRNKFGAGGFXXXXXXXXXXXXXXMAGIGSDPNYNPSRG--------------------XXXXXXXXXDIGSKGISFITSSLSSLTTGVQ 251          
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Match: A0A7S2HYT0_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYT0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.600e-6
Identity = 36/71 (50.70%), Postives = 41/71 (57.75%), Query Frame = 3
Query:    6 GLDKASMERLPGETDAEYVARQKALRGQASARMRDKFGG----------GNRMQGIGSDSSYNPASGGYGG 188
            G D   MERL GET+ +YVARQ  LR +A ARM  KFGG          G  M G+GSD +YNP  G  GG
Sbjct:   39 GEDPNGMERLTGETEQQYVARQTRLREEARARMAAKFGGSGXXXXXXSGGRTMGGVGSDPNYNPHGGSMGG 109          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5010.12251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FNH5_ECTSI1.230e-3478.30Arf-GAP domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S2R4M4_9STRA3.360e-1268.33Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2V5A2_9STRA2.480e-1139.68Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1Z5KGV0_FISSO1.920e-960.32ADP-ribosylation factor GTPase-activating protein ... [more]
A0A7S3P2L1_9STRA2.160e-956.76Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4JPG9_9STRA9.240e-853.42Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
F0Y3J3_AURAN1.460e-756.90Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A7S2CK86_9STRA1.510e-758.18Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A835Z255_9STRA1.690e-735.00Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A7S2HYT0_9STRA1.600e-650.70Hypothetical protein n=2 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5010contigH-paniculata_contig5010:10481..12649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue3.5e-31
Seed eggNOG ortholog2880.D7FNH5
KEGG koko:K12492
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0704@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size1216
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5010.12251.1prot_H-paniculata_contig5010.12251.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5010 10504..12029 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.12036-UTR-H-paniculata_contig5010:10480..105031622930475.12036-UTR-H-paniculata_contig5010:10480..10503Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5010 10481..10503 +
1691481308.2776656-UTR-H-paniculata_contig5010:10480..105031691481308.2776656-UTR-H-paniculata_contig5010:10480..10503Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5010 10481..10503 +
1622930475.1603017-UTR-H-paniculata_contig5010:12029..126491622930475.1603017-UTR-H-paniculata_contig5010:12029..12649Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5010 12030..12649 +
1691481308.3080814-UTR-H-paniculata_contig5010:12029..126491691481308.3080814-UTR-H-paniculata_contig5010:12029..12649Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5010 12030..12649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.1323185-CDS-H-paniculata_contig5010:10503..106171622930475.1323185-CDS-H-paniculata_contig5010:10503..10617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5010 10504..10617 +
1691481308.2883573-CDS-H-paniculata_contig5010:10503..106171691481308.2883573-CDS-H-paniculata_contig5010:10503..10617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5010 10504..10617 +
1622930475.1459296-CDS-H-paniculata_contig5010:11570..120291622930475.1459296-CDS-H-paniculata_contig5010:11570..12029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5010 11571..12029 +
1691481308.298077-CDS-H-paniculata_contig5010:11570..120291691481308.298077-CDS-H-paniculata_contig5010:11570..12029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5010 11571..12029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5010.12251.1

>prot_H-paniculata_contig5010.12251.1 ID=prot_H-paniculata_contig5010.12251.1|Name=mRNA_H-paniculata_contig5010.12251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MERLPGETDAEYVARQKALRGQASARMRDKFGGGNRMQGIGSDSSYNPAS
GGYGGAGAGAGGGVSSPGGLNADEIGGQIGQIGQKSMRFLSESFATLQTG
VKASKSCRYLRGGMEVQGLNALIPILVECLTTVGCPGTIYHLPLTSPDSY
CYYSRVAGRRVRRVHSRRAYFVPLFLLMWCALIVICNDAW*
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mRNA from alignment at H-paniculata_contig5010:10481..12649+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5010.12251.1 ID=mRNA_H-paniculata_contig5010.12251.1|Name=mRNA_H-paniculata_contig5010.12251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2169bp|location=Sequence derived from alignment at H-paniculata_contig5010:10481..12649+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGGCTCGACAAGGCGAGCATGGAAAGGCTCCCAGGGGAAACTGAC GCAGAGTATGTGGCGCGACAGAAAGCGCTACGCGGTCAGGCGTCCGCGCG GATGCGCGATAAGTTCGGGGGCGGGAACCGCATGCAGGTGCAATTGGTCT AGAAGTTTGTTAGATTGGTTGGTGTGGTGTGGGGGGCGGGGTGGGTCGCG GGACGAGACGGTGTTGTGCGCCATGTCCTGTGGGTCGTTGTTGATCGTGA CGCGTGTTGTAGTTTGCTTGTTGACACGACATTGTGAAGATGACTCTGAG TGTTAGGTTCTTAGGGTGGGGGTCGTATGGGACGAAGGCTCGGGGGACCG GGGGACCGGGTTGTGGCTTCTGTCATGTTGATGTGTGATGGCGGAAGCTA CGGTACAACAATGTTTATGCTTTAGCTGTGCGGTTGCTGCCTTCAGGGGA GCGTTGCGTTGGGATACGTGTTTCGGCAAGATTCAATGCACGAAAAAATT AGCTGCCTCAGGTGATGAGCGTGGCTAGCTAAGCAGGTCATCGTTTGGTA CTGAGTATTGCTTTATGTCTATATCGAAAATACATCCTGGAGCACTCGAC CCATTTTTTCTAGCCTTTTTTTCACGTTCCACGTCAGGCACATTTTGTTT GCTGGCAGCTGCCTACGTGCCCTCGATTTTACTATTGCGCCACATGTGTT AGGTTGTAATCCATAAGTACAGCATATTATATTTTTTCTTCACACCAAAA ATGCCGAAGCATGCGCCAAACTAAATTGTACTGTACAGAGATGTCCTTGC CGGTTTCCCTTTGCTTTTGAGTATTTTGGTAGTTCGTCCCAATCTTTTTC GATTAGTCGTAGACCTTACTAGTATTTACGAATAGGATTATATTTCTAGT TTTTTTTTGCATTTGGCACTACATAAAAAGGTCTGTCTTTCCCACTTCAG AACCCTGAACCATGACGTCACTGCCCGATCAGCACCAACACTAATGATAG CCATTGATGACGAGGCTGACAGTGCAACCACCACGCGGCTGAGAAGCTGC TGACTCGCACTCATTCTCCCTTTATTTTCTCATGCTGCAGGGGATCGGAA GCGATTCCTCGTACAATCCGGCTAGCGGGGGCTACGGTGGCGCCGGCGCC GGCGCCGGCGGCGGGGTGTCGAGTCCGGGGGGCCTCAACGCCGACGAGAT CGGCGGACAGATCGGACAGATCGGACAGAAGTCTATGCGCTTTTTATCCG AGTCTTTCGCAACCTTGCAGACTGGTGTCAAGGCGAGTAAATCGTGCCGC TATTTGCGGGGGGGAATGGAAGTTCAGGGTTTAAATGCGTTAATTCCTAT ACTTGTCGAGTGTCTAACAACTGTCGGCTGTCCTGGAACAATATATCACC TACCCTTGACTTCACCCGATTCGTATTGTTATTATTCACGCGTCGCGGGT CGTCGAGTTCGCCGAGTTCATTCAAGGAGGGCCTATTTTGTTCCCCTTTT TTTGTTAATGTGGTGCGCGCTTATCGTCATCTGTAATGACGCTTGGTGAG CTACGCGCAGCTAATGTTCGGGGACGGGGGCATGCGTTTACCCACCTCAC CTAGCGTCTACTGTATCTCCTTCGGTATAGTCACGTTTTTGGCTGCTGGC AGATCAGAGGGGCAAGGTGTGAGGTTCACTACTTGGCTGATGGCGCGTTG GAGCTGCAATGTGTGAGGTTGTTCTATACGGGTGTGTGTTTATGACCAGT AGACGCGAGTGTCCACCATGACGATCGTAGTGTGAGAAAGCTGGCGACAT AAGATGAAAACAATGTCTCATTTCGTTCTGGCGCGTGTAAACGAAAAAAG TGGACGGAGAAGAGTTGCCGCTCACGCATTTATCCGTTGGCCGCTCCGCT GTGGTGGCGTATTTTTGCTAGGTTTTATGTTGCTCTATCTTATGTTGCCG ACGTACGGCTCAAGTTAGAAGGGAGTTTTGCAGGCGTTTTTACTTGCGCT TGTAACCGATTTGCCGCTGCTTTTTTTGCACTTTCGGTGACACACTACGT TTTTCTACCTTTTTTCTTTCGTCTCGATGTTTCGGTGTAAACTGCGTCAT ATTTATAAGCCTTCGTTGCCCTGCTTTCTCCGTTGTAAGCCGCTATTCTG TGTGTACTCGTCTTTTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5010:10481..12649+

>mRNA_H-paniculata_contig5010.12251.1 ID=mRNA_H-paniculata_contig5010.12251.1|Name=mRNA_H-paniculata_contig5010.12251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig5010:10481..12649+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAGGCTCCCAGGGGAAACTGACGCAGAGTATGTGGCGCGACAGAA
AGCGCTACGCGGTCAGGCGTCCGCGCGGATGCGCGATAAGTTCGGGGGCG
GGAACCGCATGCAGATGGAAAGGCTCCCAGGGGAAACTGACGCAGAGTAT
GTGGCGCGACAGAAAGCGCTACGCGGTCAGGCGTCCGCGCGGATGCGCGA
TAAGTTCGGGGGCGGGAACCGCATGCAGGGGATCGGAAGCGATTCCTCGT
ACAATCCGGCTAGCGGGGGCTACGGTGGCGCCGGCGCCGGCGCCGGCGGC
GGGGTGTCGAGTCCGGGGGGCCTCAACGCCGACGAGATCGGCGGACAGAT
CGGACAGATCGGACAGAAGTCTATGCGCTTTTTATCCGAGTCTTTCGCAA
CCTTGCAGACTGGTGTCAAGGCGAGTAAATCGTGCCGCTATTTGCGGGGG
GGAATGGAAGTTCAGGGTTTAAATGCGTTAATTCCTATACTTGTCGAGTG
TCTAACAACTGTCGGCTGTCCTGGAACAATATATCACCTACCCTTGACTT
CACCCGATTCGTATTGTTATTATTCACGCGTCGCGGGTCGTCGAGTTCGC
CGAGTTCATTCAAGGAGGGCCTATTTTGTTCCCCTTTTTTTGTTAATGTG
GTGCGCGCTTATCGTCATCTGTAATGACGCTTGGTGAGGGATCGGAAGCG
ATTCCTCGTACAATCCGGCTAGCGGGGGCTACGGTGGCGCCGGCGCCGGC
GCCGGCGGCGGGGTGTCGAGTCCGGGGGGCCTCAACGCCGACGAGATCGG
CGGACAGATCGGACAGATCGGACAGAAGTCTATGCGCTTTTTATCCGAGT
CTTTCGCAACCTTGCAGACTGGTGTCAAGGCGAGTAAATCGTGCCGCTAT
TTGCGGGGGGGAATGGAAGTTCAGGGTTTAAATGCGTTAATTCCTATACT
TGTCGAGTGTCTAACAACTGTCGGCTGTCCTGGAACAATATATCACCTAC
CCTTGACTTCACCCGATTCGTATTGTTATTATTCACGCGTCGCGGGTCGT
CGAGTTCGCCGAGTTCATTCAAGGAGGGCCTATTTTGTTCCCCTTTTTTT
GTTAATGTGGTGCGCGCTTATCGTCATCTGTAATGACGCTTGGTGA
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