mRNA_H-paniculata_contig50070.12245.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: M5BWJ0_THACB (Rhizoctonia solani AG1-IB WGS project CAOJ00000000 data, isolate 7/3/14, contig 10758 n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=M5BWJ0_THACB) HSP 1 Score: 110 bits (274), Expect = 1.160e-25 Identity = 51/116 (43.97%), Postives = 80/116 (68.97%), Query Frame = 1
Query: 1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
G++FK+ G +++W SR+Q ++ SSTEAEYVAA A +E +++R L +GF G T ++ +N++++ LSK G TKHIRV++H IR+ I + LKF+ T +Q+AD+LTK
Sbjct: 610 GWIFKMTGGSIAWSSRKQPTISLSSTEAEYVAAASAARELIWVRGFLSELGFTQNGPTVVYTDNQSSMALSKNPGNHQNTKHIRVKYHFIREMIELKEIELKFIPTDEQIADMLTK 725
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: UPI001D00A395 (secreted RxLR effector protein 161-like n=2 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D00A395) HSP 1 Score: 105 bits (262), Expect = 1.480e-25 Identity = 51/116 (43.97%), Postives = 78/116 (67.24%), Query Frame = 1
Query: 1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
GYVF LN A +SWCS++Q +V+ S+TEAEY+A G KE ++L+ +L+ +G + S + +N++AI L+ TKHI VR+H IR+ + +G + L +V+T +QLADI TK
Sbjct: 119 GYVFMLNNAPVSWCSKKQNIVSLSTTEAEYIALGHGVKEAIWLKRMLKELGIQFE-SVPMNVDNQSAIKLASNPEFHKRTKHIEVRYHFIREVVEKGTIVLAYVKTQEQLADIFTK 233
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA) HSP 1 Score: 106 bits (265), Expect = 1.180e-24 Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 1
Query: 1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
GYVF L+G A++W SR+Q +VT SSTEAEYVAA + ++++ +L IGF TLF +N + I LSK + +KHIRVR+H +R+ +EG++ L T +QLADI+TK
Sbjct: 356 GYVFLLSGGAVAWSSRKQPIVTLSSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTLVHCNTEEQLADIMTK 471
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: H3G5F6_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5F6_PHYRM) HSP 1 Score: 98.6 bits (244), Expect = 2.850e-24 Identity = 49/116 (42.24%), Postives = 76/116 (65.52%), Query Frame = 1
Query: 1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
GYVF LNG+A+SW S+ Q V SSTEAEY+A A +E V+LR+LL +G G+TT+F++N+ I L+K TKHI +++H +R+ + + ++ L++ T + +AD TK
Sbjct: 5 GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHILREKVEDKVIVLEYNPTDEMIADGFTK 120
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: UPI001E1BA65C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA65C) HSP 1 Score: 100 bits (250), Expect = 3.220e-24 Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
GYVF LNGAA+SW ++Q+ S+TEAE+VA+ EAGKE V++ L+ + LF +N++AI + + TKHI VR+H IR+ +G++ K+V T +QLADILTK
Sbjct: 71 GYVFLLNGAAISWSGKKQKCTAQSTTEAEFVASSEAGKEAVWILRGLKELEGDVPTPMELFMDNQSAIRIIRNPELHQRTKHIDVRYHFIRELQEQGVIDAKYVNTNEQLADILTK 186
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: A0A5S6QK47_TRIMR (Uncharacterized protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QK47_TRIMR) HSP 1 Score: 100 bits (250), Expect = 5.540e-24 Identity = 50/116 (43.10%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
GYV +L A+SW S++Q +V SSTEAEY+AA +A +E ++LR+LL G R +T ++E+N+ I L++ TKHI VR H +R +GI+ L++ + D +ADILTK
Sbjct: 83 GYVVRLGKCAVSWSSQKQSVVALSSTEAEYIAASQAFREILWLRQLLDDTGISQRDATIIYEDNQGCIRLAETDRCSARTKHIDVRCHLLRNLRNQGIINLEYCPSEDMIADILTK 198
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: A0A060S8R4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S8R4_PYCCI) HSP 1 Score: 102 bits (253), Expect = 6.840e-24 Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 1
Query: 1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
GYVF ++G A+SW S++Q+LVT S+ E+EYVA A KE V+LR + + TTL+ +N+A I L+K TKHI VR+H IR I G + L + TGD ADILTK
Sbjct: 160 GYVFLVDGGAVSWASKKQELVTLSTAESEYVATTHAAKEAVWLRRFIGEVFGPLAEPTTLYNDNQATIALTKDGSYHTRTKHIDVRYHFIRYSINAGSIRLLYCPTGDMTADILTK 275
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: A0A6A6LTX8_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LTX8_HEVBR) HSP 1 Score: 101 bits (252), Expect = 1.080e-23 Identity = 49/116 (42.24%), Postives = 74/116 (63.79%), Query Frame = 1
Query: 1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
GY F +G A++W SR+Q +VT S+TEAE++AA + +++R +L IG T L +N + I LSK +KHIRVR+H +R ++EGI+ L+F T +QLAD++TK
Sbjct: 165 GYAFLFSGGAVAWSSRKQPIVTLSTTEAEFIAAAACACQAIWMRRILEEIGHSQEEGTALMCDNTSTIKLSKNPVLHGRSKHIRVRFHFLRDLVKEGIVELQFCGTKEQLADVMTK 280
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: A0A8J2RPB7_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2RPB7_9CRUS) HSP 1 Score: 104 bits (259), Expect = 1.280e-23 Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 16 LNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
LNG ++W SR Q V+ SSTEAEYVAA A K ++ R+LL IG TTL +N+ AI+L K SG +KHI V++H IR ++EG + ++++ T QLADILTK
Sbjct: 1274 LNGGPVAWSSRRQDCVSLSSTEAEYVAASAATKTVIWFRQLLDDIGCEQTSPTTLLCDNQGAISLVKNSGHQARSKHIDVKYHHIRDMVKEGAIHIEYIHTSQQLADILTK 1384
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH) HSP 1 Score: 103 bits (258), Expect = 1.740e-23 Identity = 51/116 (43.97%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
GYVF L G A++W S++Q +VT S+TEAE+V+A + V+LR +L IG G T +F +N + I LSK +KHI VR+H +R+ ++EG + L + T DQ+ADI+TK
Sbjct: 1198 GYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTDQVADIMTK 1313 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig50070.12245.1 >prot_H-paniculata_contig50070.12245.1 ID=prot_H-paniculata_contig50070.12245.1|Name=mRNA_H-paniculata_contig50070.12245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIback to top mRNA from alignment at H-paniculata_contig50070:877..1227- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig50070.12245.1 ID=mRNA_H-paniculata_contig50070.12245.1|Name=mRNA_H-paniculata_contig50070.12245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig50070:877..1227- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig50070:877..1227- >mRNA_H-paniculata_contig50070.12245.1 ID=mRNA_H-paniculata_contig50070.12245.1|Name=mRNA_H-paniculata_contig50070.12245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig50070:877..1227- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |