mRNA_H-paniculata_contig50070.12245.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50070.12245.1
Unique NamemRNA_H-paniculata_contig50070.12245.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: M5BWJ0_THACB (Rhizoctonia solani AG1-IB WGS project CAOJ00000000 data, isolate 7/3/14, contig 10758 n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=M5BWJ0_THACB)

HSP 1 Score: 110 bits (274), Expect = 1.160e-25
Identity = 51/116 (43.97%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
            G++FK+ G +++W SR+Q  ++ SSTEAEYVAA  A +E +++R  L  +GF   G T ++ +N++++ LSK  G    TKHIRV++H IR+ I    + LKF+ T +Q+AD+LTK
Sbjct:  610 GWIFKMTGGSIAWSSRKQPTISLSSTEAEYVAAASAARELIWVRGFLSELGFTQNGPTVVYTDNQSSMALSKNPGNHQNTKHIRVKYHFIREMIELKEIELKFIPTDEQIADMLTK 725          
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: UPI001D00A395 (secreted RxLR effector protein 161-like n=2 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D00A395)

HSP 1 Score: 105 bits (262), Expect = 1.480e-25
Identity = 51/116 (43.97%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
            GYVF LN A +SWCS++Q +V+ S+TEAEY+A G   KE ++L+ +L+ +G  +  S  +  +N++AI L+        TKHI VR+H IR+ + +G + L +V+T +QLADI TK
Sbjct:  119 GYVFMLNNAPVSWCSKKQNIVSLSTTEAEYIALGHGVKEAIWLKRMLKELGIQFE-SVPMNVDNQSAIKLASNPEFHKRTKHIEVRYHFIREVVEKGTIVLAYVKTQEQLADIFTK 233          
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA)

HSP 1 Score: 106 bits (265), Expect = 1.180e-24
Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
            GYVF L+G A++W SR+Q +VT SSTEAEYVAA     + ++++ +L  IGF      TLF +N + I LSK +     +KHIRVR+H +R+  +EG++ L    T +QLADI+TK
Sbjct:  356 GYVFLLSGGAVAWSSRKQPIVTLSSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTLVHCNTEEQLADIMTK 471          
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: H3G5F6_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5F6_PHYRM)

HSP 1 Score: 98.6 bits (244), Expect = 2.850e-24
Identity = 49/116 (42.24%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
            GYVF LNG+A+SW S+ Q  V  SSTEAEY+A   A +E V+LR+LL  +G    G+TT+F++N+  I L+K       TKHI +++H +R+ + + ++ L++  T + +AD  TK
Sbjct:    5 GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHILREKVEDKVIVLEYNPTDEMIADGFTK 120          
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: UPI001E1BA65C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA65C)

HSP 1 Score: 100 bits (250), Expect = 3.220e-24
Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
            GYVF LNGAA+SW  ++Q+    S+TEAE+VA+ EAGKE V++   L+ +         LF +N++AI + +       TKHI VR+H IR+   +G++  K+V T +QLADILTK
Sbjct:   71 GYVFLLNGAAISWSGKKQKCTAQSTTEAEFVASSEAGKEAVWILRGLKELEGDVPTPMELFMDNQSAIRIIRNPELHQRTKHIDVRYHFIRELQEQGVIDAKYVNTNEQLADILTK 186          
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: A0A5S6QK47_TRIMR (Uncharacterized protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QK47_TRIMR)

HSP 1 Score: 100 bits (250), Expect = 5.540e-24
Identity = 50/116 (43.10%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
            GYV +L   A+SW S++Q +V  SSTEAEY+AA +A +E ++LR+LL   G   R +T ++E+N+  I L++       TKHI VR H +R    +GI+ L++  + D +ADILTK
Sbjct:   83 GYVVRLGKCAVSWSSQKQSVVALSSTEAEYIAASQAFREILWLRQLLDDTGISQRDATIIYEDNQGCIRLAETDRCSARTKHIDVRCHLLRNLRNQGIINLEYCPSEDMIADILTK 198          
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: A0A060S8R4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S8R4_PYCCI)

HSP 1 Score: 102 bits (253), Expect = 6.840e-24
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
            GYVF ++G A+SW S++Q+LVT S+ E+EYVA   A KE V+LR  +  +       TTL+ +N+A I L+K       TKHI VR+H IR  I  G + L +  TGD  ADILTK
Sbjct:  160 GYVFLVDGGAVSWASKKQELVTLSTAESEYVATTHAAKEAVWLRRFIGEVFGPLAEPTTLYNDNQATIALTKDGSYHTRTKHIDVRYHFIRYSINAGSIRLLYCPTGDMTADILTK 275          
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: A0A6A6LTX8_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LTX8_HEVBR)

HSP 1 Score: 101 bits (252), Expect = 1.080e-23
Identity = 49/116 (42.24%), Postives = 74/116 (63.79%), Query Frame = 1
Query:    1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
            GY F  +G A++W SR+Q +VT S+TEAE++AA     + +++R +L  IG      T L  +N + I LSK       +KHIRVR+H +R  ++EGI+ L+F  T +QLAD++TK
Sbjct:  165 GYAFLFSGGAVAWSSRKQPIVTLSTTEAEFIAAAACACQAIWMRRILEEIGHSQEEGTALMCDNTSTIKLSKNPVLHGRSKHIRVRFHFLRDLVKEGIVELQFCGTKEQLADVMTK 280          
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: A0A8J2RPB7_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2RPB7_9CRUS)

HSP 1 Score: 104 bits (259), Expect = 1.280e-23
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   16 LNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
            LNG  ++W SR Q  V+ SSTEAEYVAA  A K  ++ R+LL  IG      TTL  +N+ AI+L K SG    +KHI V++H IR  ++EG + ++++ T  QLADILTK
Sbjct: 1274 LNGGPVAWSSRRQDCVSLSSTEAEYVAASAATKTVIWFRQLLDDIGCEQTSPTTLLCDNQGAISLVKNSGHQARSKHIDVKYHHIRDMVKEGAIHIEYIHTSQQLADILTK 1384          
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 103 bits (258), Expect = 1.740e-23
Identity = 51/116 (43.97%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSIGFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILALKFVQTGDQLADILTK 348
            GYVF L G A++W S++Q +VT S+TEAE+V+A     + V+LR +L  IG    G T +F +N + I LSK       +KHI VR+H +R+ ++EG + L +  T DQ+ADI+TK
Sbjct: 1198 GYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTDQVADIMTK 1313          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50070.12245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M5BWJ0_THACB1.160e-2543.97Rhizoctonia solani AG1-IB WGS project CAOJ00000000... [more]
UPI001D00A3951.480e-2543.97secreted RxLR effector protein 161-like n=2 Tax=Co... [more]
A0A1J3D358_NOCCA1.180e-2446.55Retrovirus-related Pol polyprotein from transposon... [more]
H3G5F6_PHYRM2.850e-2442.24Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
UPI001E1BA65C3.220e-2444.83secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A5S6QK47_TRIMR5.540e-2443.10Uncharacterized protein n=1 Tax=Trichuris muris Ta... [more]
A0A060S8R4_PYCCI6.840e-2446.55Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A6A6LTX8_HEVBR1.080e-2342.24Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
A0A8J2RPB7_9CRUS1.280e-2347.75Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
Q9C7Y1_ARATH1.740e-2343.97Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50070contigH-paniculata_contig50070:877..1227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score104.8
Seed ortholog evalue2.9e-20
Seed eggNOG ortholog3641.EOY12702
KEGG koko:K13459
KEGG Pathwayko04626,map04626
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0016020,GO:0023052,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071944
EggNOG free text desc.Belongs to the disease resistance NB-LRR family
EggNOG OGs37T06@33090,COG2801@1,KOG0017@2759,KOG4658@1,KOG4658@2759
COG Functional cat.T
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930474.4501114-CDS-H-paniculata_contig50070:876..12271622930474.4501114-CDS-H-paniculata_contig50070:876..1227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50070 877..1227 -
1691481308.0207312-CDS-H-paniculata_contig50070:876..12271691481308.0207312-CDS-H-paniculata_contig50070:876..1227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50070 877..1227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50070.12245.1prot_H-paniculata_contig50070.12245.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50070 877..1227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50070.12245.1

>prot_H-paniculata_contig50070.12245.1 ID=prot_H-paniculata_contig50070.12245.1|Name=mRNA_H-paniculata_contig50070.12245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
GYVFKLNGAALSWCSREQQLVTWSSTEAEYVAAGEAGKETVYLRELLRSI
GFGYRGSTTLFEENKAAINLSKGSGAGCTTKHIRVRWHGIRQWIREGILA
LKFVQTGDQLADILTK*
back to top

mRNA from alignment at H-paniculata_contig50070:877..1227-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50070.12245.1 ID=mRNA_H-paniculata_contig50070.12245.1|Name=mRNA_H-paniculata_contig50070.12245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig50070:877..1227- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATACGTCTTCAAGTTGAACGGTGCGGCCCTAAGCTGGTGCTCTAGGGA GCAACAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAG GAGAAGCGGGAAAGGAGACGGTATATCTTAGGGAGTTACTAAGATCGATA GGTTTCGGATACAGGGGGAGCACGACATTGTTTGAGGAAAATAAAGCAGC TATTAATCTCAGTAAGGGATCTGGCGCAGGCTGCACGACAAAGCACATCC GAGTGCGCTGGCACGGAATTCGACAGTGGATTCGGGAAGGAATATTGGCA TTGAAATTCGTGCAGACCGGCGATCAACTTGCTGACATTTTAACGAAATG A
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig50070:877..1227-

>mRNA_H-paniculata_contig50070.12245.1 ID=mRNA_H-paniculata_contig50070.12245.1|Name=mRNA_H-paniculata_contig50070.12245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig50070:877..1227- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATACGTCTTCAAGTTGAACGGTGCGGCCCTAAGCTGGTGCTCTAGGGA
GCAACAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAG
GAGAAGCGGGAAAGGAGACGGTATATCTTAGGGAGTTACTAAGATCGATA
GGTTTCGGATACAGGGGGAGCACGACATTGTTTGAGGAAAATAAAGCAGC
TATTAATCTCAGTAAGGGATCTGGCGCAGGCTGCACGACAAAGCACATCC
GAGTGCGCTGGCACGGAATTCGACAGTGGATTCGGGAAGGAATATTGGCA
TTGAAATTCGTGCAGACCGGCGATCAACTTGCTGACATTTTAACGAAATG
AGGATACGTCTTCAAGTTGAACGGTGCGGCCCTAAGCTGGTGCTCTAGGG
AGCAACAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCA
GGAGAAGCGGGAAAGGAGACGGTATATCTTAGGGAGTTACTAAGATCGAT
AGGTTTCGGATACAGGGGGAGCACGACATTGTTTGAGGAAAATAAAGCAG
CTATTAATCTCAGTAAGGGATCTGGCGCAGGCTGCACGACAAAGCACATC
CGAGTGCGCTGGCACGGAATTCGACAGTGGATTCGGGAAGGAATATTGGC
ATTGAAATTCGTGCAGACCGGCGATCAACTTGCTGACATTTTAACGAAAT
GA
back to top