mRNA_H-paniculata_contig11908.1223.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11908.1223.1
Unique NamemRNA_H-paniculata_contig11908.1223.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11908.1223.1 vs. uniprot
Match: A0A6H5K5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T2_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 5.720e-28
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 2 
Query:    2 YITAAMNPRMLMTVDEQLNPLPVNVRVGQAVETIGQAGKPKTITGFQTHTTPVLLGVRDRAEV 190
            YITAAMNPRMLMTVD  L PLPVNVRVGQAVET+GQAGKPKTITGFQTHTTPVLLGVRDRAE+
Sbjct:  886 YITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAEL 948
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BLAST of mRNA_H-paniculata_contig11908.1223.1 vs. uniprot
Match: A0A6A5ADN9_9STRA (RPN1_C domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ADN9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.700e-24
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 2 
Query:    5 ITAAMNPRMLMTVDEQLNPLPVNVRVGQAVETIGQAGKPKTITGFQTHTTPVLLGVRDRAEV 190
            I  AM PRML+TVDEQ NPLPV+VRVGQAVE +GQAG+PK+ITGFQTH TPVLL V+DRAE+
Sbjct:   16 IVTAMQPRMLITVDEQGNPLPVSVRVGQAVEVVGQAGRPKSITGFQTHNTPVLLNVKDRAEL 77
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BLAST of mRNA_H-paniculata_contig11908.1223.1 vs. uniprot
Match: W7TKW5_9STRA (Armadillo-like helical n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKW5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.340e-24
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = 2 
Query:   14 AMNPRMLMTVDEQLNPLPVNVRVGQAVETIGQAGKPKTITGFQTHTTPVLLGVRDRAEV 190
            AMNPRML+T+DE LNPLPV VRVGQAVET+GQAG+PKTITGFQTHTTPVLLGV+DRAE+
Sbjct:  835 AMNPRMLITLDEDLNPLPVTVRVGQAVETVGQAGRPKTITGFQTHTTPVLLGVKDRAEL 893
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BLAST of mRNA_H-paniculata_contig11908.1223.1 vs. uniprot
Match: A0A7S1E2Q6_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E2Q6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.460e-24
Identity = 47/63 (74.60%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:    2 YITAAMNPRMLMTVDEQLNPLPVNVRVGQAVETIGQAGKPKTITGFQTHTTPVLLGVRDRAEV 190
            Y+T AMNPRML+TV+E+++  PV VRVGQAVET+GQAGKPK ITGFQTH TPVLLGV++RAE+
Sbjct:   44 YLTCAMNPRMLITVNEEISLRPVTVRVGQAVETVGQAGKPKRITGFQTHQTPVLLGVKERAEL 106
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BLAST of mRNA_H-paniculata_contig11908.1223.1 vs. uniprot
Match: A0A7S2CWB6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CWB6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.090e-23
Identity = 47/63 (74.60%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:    2 YITAAMNPRMLMTVDEQLNPLPVNVRVGQAVETIGQAGKPKTITGFQTHTTPVLLGVRDRAEV 190
            Y+T AMNPRMLMTVDE+  PLP+NVRVG+AVET+GQAGKPK+I+GFQTHTTPVL+ V +R E+
Sbjct:  811 YVTTAMNPRMLMTVDEEFQPLPINVRVGKAVETVGQAGKPKSISGFQTHTTPVLISVTERVEL 873
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BLAST of mRNA_H-paniculata_contig11908.1223.1 vs. uniprot
Match: A0A7S0WQH9_9CHLO (26S proteasome non-ATPase regulatory subunit 2 homolog n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WQH9_9CHLO)

HSP 1 Score: 104 bits (260), Expect = 1.280e-22
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:    2 YITAAMNPRMLMTVDEQLNPLPVNVRVGQAVETIGQAGKPKTITGFQTHTTPVLLGVRDRAEV 190
            Y+ +AM+PRMLMT+DE+  PLPV VRVGQAV+ +GQAGKPKTITGFQTHTTPVLLGV DRAE+
Sbjct:  804 YLVSAMSPRMLMTLDEEGKPLPVTVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLGVGDRAEL 866
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BLAST of mRNA_H-paniculata_contig11908.1223.1 vs. uniprot
Match: A0A7S2G4T1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4T1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.740e-22
Identity = 48/63 (76.19%), Postives = 58/63 (92.06%), Query Frame = 2 
Query:    2 YITAAMNPRMLMTVDEQLNPLPVNVRVGQAVETIGQAGKPKTITGFQTHTTPVLLGVRDRAEV 190
            Y+T+AMNPRML+TVDE+  PLPV+VRVGQAVET+GQAG+PKTI+GFQTHTTPVLL   +RAE+
Sbjct:  797 YVTSAMNPRMLITVDEEFEPLPVSVRVGQAVETVGQAGRPKTISGFQTHTTPVLLTAIERAEL 859
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BLAST of mRNA_H-paniculata_contig11908.1223.1 vs. uniprot
Match: A0A0P1AZB9_PLAHL (26s proteasome non-atpase regulatory subunit 2 n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1AZB9_PLAHL)

HSP 1 Score: 104 bits (259), Expect = 1.740e-22
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 2 
Query:    5 ITAAMNPRMLMTVDEQLNPLPVNVRVGQAVETIGQAGKPKTITGFQTHTTPVLLGVRDRAEV 190
            I  AM PRML+T+DE+LNPLPV+VRVGQAVE +GQAG+PK+ITGFQTHTTPVLL VRDRAE+
Sbjct:  808 IATAMQPRMLITLDEELNPLPVSVRVGQAVEIVGQAGRPKSITGFQTHTTPVLLNVRDRAEL 869
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BLAST of mRNA_H-paniculata_contig11908.1223.1 vs. uniprot
Match: A0A836CK10_9STRA (26S proteasome non-ATPase regulatory subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK10_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.750e-22
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 2 
Query:    2 YITAAMNPRMLMTVDEQLNPLPVNVRVGQAVETIGQAGKPKTITGFQTHTTPVLLGVRDRAEV 190
            ++  AM PRMLM VDE + PL V VRVGQAVET+GQAG+PKTITGFQTHTTPVLLGVRDRAE+
Sbjct:  834 FLACAMQPRMLMAVDEDVKPLSVTVRVGQAVETVGQAGRPKTITGFQTHTTPVLLGVRDRAEL 896
[Close]
BLAST of mRNA_H-paniculata_contig11908.1223.1 vs. uniprot
Match: UPI000C25414F (26S proteasome non-ATPase regulatory subunit 2-like n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C25414F)

HSP 1 Score: 95.9 bits (237), Expect = 2.220e-22
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 2 
Query:    5 ITAAMNPRMLMTVDEQLNPLPVNVRVGQAVETIGQAGKPKTITGFQTHTTPVLLGVRDRAEV 190
            + AAM PRML+T DE+LNPLP+ VRVG AV+ +GQAGKPKTITGFQTHTTPVLL   +RAE+
Sbjct:   15 LAAAMQPRMLVTFDEELNPLPIPVRVGLAVDVVGQAGKPKTITGFQTHTTPVLLAYGERAEL 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11908.1223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5T2_9PHAE5.720e-2892.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A5ADN9_9STRA2.700e-2477.42RPN1_C domain-containing protein n=2 Tax=Aphanomyc... [more]
W7TKW5_9STRA4.340e-2486.44Armadillo-like helical n=2 Tax=Monodopsidaceae Tax... [more]
A0A7S1E2Q6_9STRA6.460e-2474.60Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2CWB6_9STRA5.090e-2374.60Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0WQH9_9CHLO1.280e-2277.7826S proteasome non-ATPase regulatory subunit 2 hom... [more]
A0A7S2G4T1_9STRA1.740e-2276.19Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A0P1AZB9_PLAHL1.740e-2279.0326s proteasome non-atpase regulatory subunit 2 n=2... [more]
A0A836CK10_9STRA1.750e-2277.7826S proteasome non-ATPase regulatory subunit 2 n=1... [more]
UPI000C25414F2.220e-2272.5826S proteasome non-ATPase regulatory subunit 2-lik... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11908contigH-paniculata_contig11908:4845..5947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog115417.EPrPW00000016550
Preferred nameRPN1
KEGG koko:K03028
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0001101,GO:0002376,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0005911,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009506,GO:0009628,GO:0009719,GO:0009725,GO:0009751,GO:0009987,GO:0010033,GO:0010498,GO:0014070,GO:0016020,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030163,GO:0031597,GO:0032182,GO:0032991,GO:0034515,GO:0042221,GO:0042493,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045087,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051726,GO:0055044,GO:0065007,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.26S proteasome non-ATPase regulatory subunit 2. Source PGD
EggNOG OGs1MG4Q@121069,COG5110@1,KOG2005@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Exons2
Model size580
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11908.1223.1prot_H-paniculata_contig11908.1223.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11908 4861..5593 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928907.7244787-UTR-H-paniculata_contig11908:4844..48601622928907.7244787-UTR-H-paniculata_contig11908:4844..4860Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11908 4845..4860 +
1691480662.7047458-UTR-H-paniculata_contig11908:4844..48601691480662.7047458-UTR-H-paniculata_contig11908:4844..4860Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11908 4845..4860 +
1622928907.8559234-UTR-H-paniculata_contig11908:5593..59471622928907.8559234-UTR-H-paniculata_contig11908:5593..5947Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11908 5594..5947 +
1691480662.7581968-UTR-H-paniculata_contig11908:5593..59471691480662.7581968-UTR-H-paniculata_contig11908:5593..5947Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11908 5594..5947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928907.8266065-CDS-H-paniculata_contig11908:4860..48841622928907.8266065-CDS-H-paniculata_contig11908:4860..4884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11908 4861..4884 +
1691480662.7283313-CDS-H-paniculata_contig11908:4860..48841691480662.7283313-CDS-H-paniculata_contig11908:4860..4884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11908 4861..4884 +
1622928907.8414118-CDS-H-paniculata_contig11908:5407..55931622928907.8414118-CDS-H-paniculata_contig11908:5407..5593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11908 5408..5593 +
1691480662.7428215-CDS-H-paniculata_contig11908:5407..55931691480662.7428215-CDS-H-paniculata_contig11908:5407..5593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11908 5408..5593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11908.1223.1

>prot_H-paniculata_contig11908.1223.1 ID=prot_H-paniculata_contig11908.1223.1|Name=mRNA_H-paniculata_contig11908.1223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MNPRMLMTVDEQLNPLPVNVRVGQAVETIGQAGKPKTITGFQTHTTPVLL
GVRDRAEVCLVCTRYIYVR*
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mRNA from alignment at H-paniculata_contig11908:4845..5947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11908.1223.1 ID=mRNA_H-paniculata_contig11908.1223.1|Name=mRNA_H-paniculata_contig11908.1223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1103bp|location=Sequence derived from alignment at H-paniculata_contig11908:4845..5947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACATCACCGCCGCAATGAACCCGCGGATGCTCATGACGGTAAACACAC
GTCCACAGGGTGTGTCATCTCTTTTGTACCGTATTCATACGTGTGTGGCA
GGCACATCGGTAGTGGTGGTGATGACGTCTTTGGTTTCGAACTGGACGGC
TTCGAATACTACGTTGCTCGTGACGAGCGAAGGCTTATGTTGTTGGATGG
ATCTCGATTTCTCTTTGCATCTGTGGATTTTACAGCCCTTATTTTGGCGC
CGAAGAAGGAGTCTGTTTTTGAACGGAAAATGCGTTTGATGTGATATTAT
GTGAACGTTGAATGCTGCAGTCGTTATGAGCACAATGATACCAACTGCTG
GTCCCATGTTGAATTCAGTTTCTGTGGTGGACTTCCTGTCTGAACAGGAG
AGGGTGCCTGTTGTTTATATATATATTAGCAAGGACATATGAGTCATTCC
CCCCTGTTTGTATATATATATATTTTCTTGCTCTATGGTTCTCCCGGTCC
TCGGATGGATGATTTATTCTCATTCATGTGTTCCTGAACATTATTTTAAT
ATGATATATTCAGGTGGACGAACAGCTGAACCCGTTGCCGGTGAACGTTC
GAGTGGGGCAGGCGGTAGAGACTATAGGGCAGGCCGGGAAGCCCAAGACC
ATCACCGGATTCCAGACGCATACCACCCCTGTTCTCTTGGGTGTACGAGA
CCGCGCAGAGGTTTGTTTAGTGTGTACTAGGTATATATACGTCCGATAAG
TATGATCTCGAGGTTTAGTCATGGGGAGGGTGTAAGTTACAGTACTTGCT
TCCTATTTAGGGTCCCTCCCATTGTGACCAATGTTAGGGGCAAGAAATGT
ATCCTTAACTAGGCATCACAAATTCTCTGAGCTCCTGTAATTAGGTTGGA
TCGCCCGTTCTTTAGTCATACTCAACTATCATACTGTAGTTGGGGATTCC
GCCGTCACGGGAAATCAAATTCGTTTGTTCGGGTATTCGAGTATATTTGT
TGTTCACCTCGACAAAATATTGCCTCTCACTATCGTACCTGTCACTTCTC
CCTCTCCCTCTTCCTCTCCCCATCGATGGGTTTGTGCTTTTTGCGGGCTG
GGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11908:4845..5947+

>mRNA_H-paniculata_contig11908.1223.1 ID=mRNA_H-paniculata_contig11908.1223.1|Name=mRNA_H-paniculata_contig11908.1223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig11908:4845..5947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCCGCGGATGCTCATGACGATGAACCCGCGGATGCTCATGACGGT
GGACGAACAGCTGAACCCGTTGCCGGTGAACGTTCGAGTGGGGCAGGCGG
TAGAGACTATAGGGCAGGCCGGGAAGCCCAAGACCATCACCGGATTCCAG
ACGCATACCACCCCTGTTCTCTTGGGTGTACGAGACCGCGCAGAGGTTTG
TTTAGTGTGTACTAGGTATATATACGTCCGATAAGTGGACGAACAGCTGA
ACCCGTTGCCGGTGAACGTTCGAGTGGGGCAGGCGGTAGAGACTATAGGG
CAGGCCGGGAAGCCCAAGACCATCACCGGATTCCAGACGCATACCACCCC
TGTTCTCTTGGGTGTACGAGACCGCGCAGAGGTTTGTTTAGTGTGTACTA
GGTATATATACGTCCGATAA
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