prot_H-paniculata_contig49903.12204.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig49903.12204.1
Unique Nameprot_H-paniculata_contig49903.12204.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length72
Homology
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: UPI001900DC38 (pentatricopeptide repeat-containing protein At1g73710 n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI001900DC38)

HSP 1 Score: 56.6 bits (135), Expect = 1.280e-7
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 0
Query:   16 WKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 72
            W + R+D + PNVI+YN+V+RALGRA KWD+     ++M E GV P + T+   I+V
Sbjct:  152 WFKSRKDYV-PNVIHYNIVLRALGRAQKWDELRLCWNEMAENGVVPTNNTYGMLIDV 207          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A8K0K9Q1_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0K9Q1_LADFU)

HSP 1 Score: 54.7 bits (130), Expect = 5.640e-7
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = 0
Query:   13 TQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTF 66
            +QL + +   G +PN+INYN +++A GR G  + +  L+D M  KG+ PD  TF
Sbjct:   82 SQLMESLESSGYEPNIINYNAMIKAFGRCGDLEVSFRLVDQMISKGIAPDSSTF 135          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: D8LCM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM4_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 6.040e-7
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 0
Query:   20 REDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAI 70
            R  G  P+V++Y+  + A  RAG W++A+ LLD MRE G+EP+  TF+  I
Sbjct:  558 RTGGPTPDVVSYSATITACSRAGNWERALGLLDQMREDGLEPNSTTFSTMI 608          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A2U1PK06_ARTAN (Pentatricopeptide repeat-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PK06_ARTAN)

HSP 1 Score: 54.7 bits (130), Expect = 6.100e-7
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 0
Query:    1 LQREKCLEFLTETQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 72
            L+ ++  E +     W + + D L PNVI+YN+V+R LGRA KWD+      DM +KGV P + T+   ++V
Sbjct:  127 LKEQRSWEKVVRVFEWMKSQPDYL-PNVIHYNVVLRVLGRARKWDELRKCWVDMAQKGVFPTNNTYGMLVDV 197          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A5A7P4N5_STRAF (Pentatricopeptide repeat-containing protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7P4N5_STRAF)

HSP 1 Score: 54.7 bits (130), Expect = 6.100e-7
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 0
Query:   16 WKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 72
            W +  ED + PNVI+YN+V+R LGRA KWD+      +M EKGV P + T++  I+V
Sbjct:  144 WFKSHEDYV-PNVIHYNIVLRELGRAKKWDELRLCWIEMAEKGVLPTNNTYSMLIDV 199          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A6J1HNW8_CUCMA (pentatricopeptide repeat-containing protein At1g73710 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1HNW8_CUCMA)

HSP 1 Score: 54.7 bits (130), Expect = 6.100e-7
Identity = 26/72 (36.11%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    1 LQREKCLEFLTETQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 72
            L+ ++  E + +   W + ++D + PNVI+YN+V+RALGRA KWD+     ++M E G+ P + T+   ++V
Sbjct:  131 LKEQRQWERVLQVFQWFKSQKDYV-PNVIHYNIVLRALGRAQKWDELRLCWNEMAENGIIPSNNTYGMLVDV 201          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A251S8L7_HELAN (Putative pentatricopeptide repeat (PPR) superfamily protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251S8L7_HELAN)

HSP 1 Score: 54.3 bits (129), Expect = 8.340e-7
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 0
Query:   16 WKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 72
            W +++ D   PNVI+YN+V+RALGRA KWD       +M EKGV P + T+   ++V
Sbjct:  150 WMKLQPD-YSPNVIHYNVVLRALGRARKWDGLRRCWIEMAEKGVLPTNNTYGMLVDV 205          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A5J5A1X8_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5A1X8_9ASTE)

HSP 1 Score: 53.9 bits (128), Expect = 1.120e-6
Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    1 LQREKCLEFLTETQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 72
            L+ ++  E + +   W + +++ L PNVI+YN+V+RALGRA KWD+      +M +KGV P + T+   ++V
Sbjct:  158 LKEQRSWERVVKVFEWMKSQKEYL-PNVIHYNVVLRALGRARKWDELRLCWIEMAKKGVLPTNNTYGMLVDV 228          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: UPI000CD9B73F (pentatricopeptide repeat-containing protein At1g73710 isoform X2 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9B73F)

HSP 1 Score: 53.9 bits (128), Expect = 1.140e-6
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 0
Query:   26 PNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 72
            PNVI+YN+V+RALGRA KWD+      DM +KGV P + T+   ++V
Sbjct:  108 PNVIHYNVVLRALGRARKWDELRRCWIDMADKGVFPTNNTYGMLVDV 154          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A5B7BND8_DAVIN (Uncharacterized protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BND8_DAVIN)

HSP 1 Score: 53.9 bits (128), Expect = 1.140e-6
Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    1 LQREKCLEFLTETQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 72
            L+ ++  E + +   W + +++ L PNVI+YN+V+RALGRA KWD+      +M +KGV P + T+   ++V
Sbjct:  165 LKEQRTWERVVKVFEWMKSQKEYL-PNVIHYNVVLRALGRAQKWDELRLCWIEMAKKGVLPTNNTYGMLVDV 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001900DC381.280e-747.37pentatricopeptide repeat-containing protein At1g73... [more]
A0A8K0K9Q1_LADFU5.640e-740.74Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
D8LCM4_ECTSI6.040e-745.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2U1PK06_ARTAN6.100e-738.89Pentatricopeptide repeat-containing protein n=1 Ta... [more]
A0A5A7P4N5_STRAF6.100e-747.37Pentatricopeptide repeat-containing protein n=1 Ta... [more]
A0A6J1HNW8_CUCMA6.100e-736.11pentatricopeptide repeat-containing protein At1g73... [more]
A0A251S8L7_HELAN8.340e-745.61Putative pentatricopeptide repeat (PPR) superfamil... [more]
A0A5J5A1X8_9ASTE1.120e-637.50Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
UPI000CD9B73F1.140e-651.06pentatricopeptide repeat-containing protein At1g73... [more]
A0A5B7BND8_DAVIN1.140e-637.50Uncharacterized protein (Fragment) n=1 Tax=Davidia... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 26..70
e-value: 9.3E-13
score: 48.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 31..62
e-value: 1.7E-10
score: 38.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 27..61
score: 13.252
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..26
score: 5.24
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 5..72
e-value: 6.0E-19
score: 70.5
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 14..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49903contigH-paniculata_contig49903:570..785 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49903.12204.1mRNA_H-paniculata_contig49903.12204.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig49903 570..785 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig49903.12204.1 ID=prot_H-paniculata_contig49903.12204.1|Name=mRNA_H-paniculata_contig49903.12204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
LQREKCLEFLTETQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVAL
LDDMREKGVEPDHRTFNAAIEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf