mRNA_H-paniculata_contig49903.12204.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A811S116_9POAL (Hypothetical protein n=3 Tax=Andropogoneae TaxID=147429 RepID=A0A811S116_9POAL) HSP 1 Score: 57.4 bits (137), Expect = 6.740e-8 Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 40 QLWKEMREDGLQPNVINYNLVVRALGRAGK-WDQAVALLDDMREKGVEPDHRTFNAAI 210
+L+ E+R G+ P ++ YN+V+ GR G+ W Q VALLD+MR GVEPD T + I
Sbjct: 53 ELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPQIVALLDEMRAAGVEPDDFTASTVI 110
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: UPI001900DC38 (pentatricopeptide repeat-containing protein At1g73710 n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI001900DC38) HSP 1 Score: 56.6 bits (135), Expect = 1.280e-7 Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 46 WKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 216
W + R+D + PNVI+YN+V+RALGRA KWD+ ++M E GV P + T+ I+V
Sbjct: 152 WFKSRKDYV-PNVIHYNIVLRALGRAQKWDELRLCWNEMAENGVVPTNNTYGMLIDV 207
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: PPR10_MAIZE (Pentatricopeptide repeat-containing protein 10, chloroplastic n=16 Tax=PACMAD clade TaxID=147370 RepID=PPR10_MAIZE) HSP 1 Score: 55.5 bits (132), Expect = 3.240e-7 Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 40 QLWKEMREDGLQPNVINYNLVVRALGRAGK-WDQAVALLDDMREKGVEPDHRTFNAAI 210
+L+ E+R G+ P ++ YN+V+ GR G+ W + VALLD+MR GVEPD T + I
Sbjct: 195 ELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVI 252
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A8K0K9Q1_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0K9Q1_LADFU) HSP 1 Score: 54.7 bits (130), Expect = 5.640e-7 Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = 1
Query: 37 TQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTF 198
+QL + + G +PN+INYN +++A GR G + + L+D M KG+ PD TF
Sbjct: 82 SQLMESLESSGYEPNIINYNAMIKAFGRCGDLEVSFRLVDQMISKGIAPDSSTF 135
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: D8LCM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM4_ECTSI) HSP 1 Score: 54.7 bits (130), Expect = 6.040e-7 Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query: 58 REDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAI 210
R G P+V++Y+ + A RAG W++A+ LLD MRE G+EP+ TF+ I
Sbjct: 558 RTGGPTPDVVSYSATITACSRAGNWERALGLLDQMREDGLEPNSTTFSTMI 608
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A2U1PK06_ARTAN (Pentatricopeptide repeat-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PK06_ARTAN) HSP 1 Score: 54.7 bits (130), Expect = 6.100e-7 Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 1 LQREKCLEFLTETQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 216
L+ ++ E + W + + D L PNVI+YN+V+R LGRA KWD+ DM +KGV P + T+ ++V
Sbjct: 127 LKEQRSWEKVVRVFEWMKSQPDYL-PNVIHYNVVLRVLGRARKWDELRKCWVDMAQKGVFPTNNTYGMLVDV 197
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A5A7P4N5_STRAF (Pentatricopeptide repeat-containing protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7P4N5_STRAF) HSP 1 Score: 54.7 bits (130), Expect = 6.100e-7 Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 46 WKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 216
W + ED + PNVI+YN+V+R LGRA KWD+ +M EKGV P + T++ I+V
Sbjct: 144 WFKSHEDYV-PNVIHYNIVLRELGRAKKWDELRLCWIEMAEKGVLPTNNTYSMLIDV 199
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A6J1HNW8_CUCMA (pentatricopeptide repeat-containing protein At1g73710 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1HNW8_CUCMA) HSP 1 Score: 54.7 bits (130), Expect = 6.100e-7 Identity = 26/72 (36.11%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 1 LQREKCLEFLTETQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 216
L+ ++ E + + W + ++D + PNVI+YN+V+RALGRA KWD+ ++M E G+ P + T+ ++V
Sbjct: 131 LKEQRQWERVLQVFQWFKSQKDYV-PNVIHYNIVLRALGRAQKWDELRLCWNEMAENGIIPSNNTYGMLVDV 201
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A251S8L7_HELAN (Putative pentatricopeptide repeat (PPR) superfamily protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251S8L7_HELAN) HSP 1 Score: 54.3 bits (129), Expect = 8.340e-7 Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1
Query: 46 WKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 216
W +++ D PNVI+YN+V+RALGRA KWD +M EKGV P + T+ ++V
Sbjct: 150 WMKLQPD-YSPNVIHYNVVLRALGRARKWDGLRRCWIEMAEKGVLPTNNTYGMLVDV 205
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A5J5A1X8_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5A1X8_9ASTE) HSP 1 Score: 53.9 bits (128), Expect = 1.120e-6 Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 1 LQREKCLEFLTETQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 216
L+ ++ E + + W + +++ L PNVI+YN+V+RALGRA KWD+ +M +KGV P + T+ ++V
Sbjct: 158 LKEQRSWERVVKVFEWMKSQKEYL-PNVIHYNVVLRALGRARKWDELRLCWIEMAKKGVLPTNNTYGMLVDV 228 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig49903.12204.1 >prot_H-paniculata_contig49903.12204.1 ID=prot_H-paniculata_contig49903.12204.1|Name=mRNA_H-paniculata_contig49903.12204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp LQREKCLEFLTETQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALback to top mRNA from alignment at H-paniculata_contig49903:570..785- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig49903.12204.1 ID=mRNA_H-paniculata_contig49903.12204.1|Name=mRNA_H-paniculata_contig49903.12204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig49903:570..785- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig49903:570..785- >mRNA_H-paniculata_contig49903.12204.1 ID=mRNA_H-paniculata_contig49903.12204.1|Name=mRNA_H-paniculata_contig49903.12204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig49903:570..785- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |