prot_H-paniculata_contig49892.12200.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig49892.12200.1
Unique Nameprot_H-paniculata_contig49892.12200.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length105
Homology
BLAST of mRNA_H-paniculata_contig49892.12200.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 56.6 bits (135), Expect = 4.270e-7
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 0
Query:    2 EIWICDNGATKHMTHNSDFLFSYQEC-DGHVRLADGNRLPIKGVGMLLLQFRCGSEVVLMKLTQVAFIPLLNHHLLSLG 79
            ++WI D+GA++HMTH S+++ + Q   D HV L DG +  + G G + +Q     + +   L  V ++P LN +L S+G
Sbjct:  286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364          
BLAST of mRNA_H-paniculata_contig49892.12200.1 vs. uniprot
Match: Q9SJT2_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SJT2_ARATH)

HSP 1 Score: 52.8 bits (125), Expect = 1.020e-5
Identity = 28/95 (29.47%), Postives = 49/95 (51.58%), Query Frame = 0
Query:    4 WICDNGATKHMTHNSDFLFSYQE-CDGHVRLADGNRLPIKGVGMLLLQFRCGSEVVLMKLTQVAFIPLLNHHLLSLGKFADFGHEYRCSREGLRI 97
            W+ D G + HMT+  ++     E   G VR+ +     ++G+G + ++   G  V   +LT V +IP ++ +LLSLG F   G+ ++     L I
Sbjct:  287 WVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVV---RLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSI 378          
BLAST of mRNA_H-paniculata_contig49892.12200.1 vs. uniprot
Match: A0A225WMA1_9STRA (CCHC-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMA1_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.350e-5
Identity = 28/86 (32.56%), Postives = 49/86 (56.98%), Query Frame = 0
Query:    2 EIWICDNGATKHMTHNSDFLFSYQECDGHVRLADGNRLPIKGVGMLLLQFR-CGSEVVLMKLTQVAFIPLLNHHLLSLGKFADFGH 86
            +IWI DNG+++H+ +++ +L   +ECD      +G  L I   G + L+   CG E V+ +L+ V F   + H+L+S G+    G+
Sbjct:  292 DIWILDNGSSRHLVNDASYLDDVEECDDQCVQPNGEPLAISMKGSVTLRVAACGVEQVV-RLSNVYFAKNVVHNLISYGQLDKVGY 376          
BLAST of mRNA_H-paniculata_contig49892.12200.1 vs. uniprot
Match: A0A445G8E4_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445G8E4_GLYSO)

HSP 1 Score: 50.4 bits (119), Expect = 6.620e-5
Identity = 24/93 (25.81%), Postives = 46/93 (49.46%), Query Frame = 0
Query:    4 WICDNGATKHMTHNSDFLFSYQEC-DGHVRLADGNRLPIKGVGMLLLQFRCGSEVVLMKLTQVAFIPLLNHHLLSLGKFADFGHEYRCSREGL 95
            W  D GA+ HM  +        E   G V   D +++P+KG+G +L++ + GS   +   + V ++P + + +LSLG+  +  ++       L
Sbjct:  315 WYLDTGASNHMCGDQSMFMEINEAATGDVSFGDDSKIPVKGIGKILIRLKNGSHQFI---SNVYYVPNMKNIILSLGQLLEKDYDIHLKEHSL 404          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49892.12200.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME4.270e-735.44Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
Q9SJT2_ARATH1.020e-529.47Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
A0A225WMA1_9STRA1.350e-532.56CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A445G8E4_GLYSO6.620e-525.81Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49892contigH-paniculata_contig49892:103..417 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49892.12200.1mRNA_H-paniculata_contig49892.12200.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig49892 103..420 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig49892.12200.1 ID=prot_H-paniculata_contig49892.12200.1|Name=mRNA_H-paniculata_contig49892.12200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MEIWICDNGATKHMTHNSDFLFSYQECDGHVRLADGNRLPIKGVGMLLLQ
FRCGSEVVLMKLTQVAFIPLLNHHLLSLGKFADFGHEYRCSREGLRINRK
TGRVL
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