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Homology
BLAST of mRNA_H-paniculata_contig11905.1220.1 vs. uniprot
Match: A0A6H5KLD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLD9_9PHAE) HSP 1 Score: 125 bits (313), Expect = 3.870e-30 Identity = 66/112 (58.93%), Postives = 85/112 (75.89%), Query Frame = 2
Query: 2 TEAQRSDTLRGVLNQMGQTVNMISVRITIGMSGHTMTKIKALEEDRAVAAGGELLAEGFVYGVAGALVIWEYMSSASDKEAKDVLAKAKKAKEQEGLKDALEAINRRLTVLE 337
TEAQR RGVLN MGQ N IS RI+I ++GHT TKIK LEED+A+A GG +LAEGF+YG+ +L+++EYMS+A DKEAK+ ++K KK +E+ + ALE INRRL LE
Sbjct: 27 TEAQRHPRFRGVLNSMGQATNRISARISIRLAGHTTTKIKPLEEDKAIADGGNMLAEGFIYGLGTSLMVFEYMSNAKDKEAKEAISKLKKEEEKREIAQALEDINRRLARLE 138
BLAST of mRNA_H-paniculata_contig11905.1220.1 vs. uniprot
Match: A0A835YQK9_9STRA (Optic atrophy 3 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQK9_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 2.790e-9 Identity = 41/111 (36.94%), Postives = 67/111 (60.36%), Query Frame = 2
Query: 5 EAQRSDTLRGVLNQMGQTVNMISVRITIGMSGHTMTKIKALEEDRAVAAGGELLAEGFVYGVAGALVIWEYMSSASDKEAKDVLAKAKKAKEQEGLKDALEAINRRLTVLE 337
+A + TL+ + MGQ+ + +S I++ +G T + IK L+E +A+A GG+LL+E F++ VAG L++W+Y +SA+ AK LK +LEAI+ RL +E
Sbjct: 28 QASANATLKRAVIWMGQSSHKVSTIISVRAAGFTASNIKPLDESKALAIGGDLLSEIFIFSVAGGLLVWDYNNSAAKAAAKAXXXXXXXXXXARQLKASLEAIHARLDEIE 138
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 1034 |
Cds size | 699 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11905.1220.1 >prot_H-paniculata_contig11905.1220.1 ID=prot_H-paniculata_contig11905.1220.1|Name=mRNA_H-paniculata_contig11905.1220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
MGQTVNMISVRITIGMSGHTMTKIKALEEDRAVAAGGELLAEGFVYGVAG ALVIWEYMSSASDKEAKDVLAKAKKAKEQEGLKDALEAINRRLTVLEMTR LERAEDQSDTLHRDDVKASISFPLVRWIPFRPLGTEVHKAAAEGSTLPDL EEGRENGRGVRSDKCESQQTGVVRQGSEGGQAGTRSSNPPNRVQENTESE ARIGSTLTSEGNARELKDRGAAVKYNGSGRGF* back to topmRNA from alignment at H-paniculata_contig11905:246..7474+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig11905.1220.1 ID=mRNA_H-paniculata_contig11905.1220.1|Name=mRNA_H-paniculata_contig11905.1220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7229bp|location=Sequence derived from alignment at H-paniculata_contig11905:246..7474+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GACAGAAGCCCAAAGGAGTGACACGCTTCGAGGCGTCCTGAACCAGATGG
GTCAAACAGTCAACATGATATCCGTCAGGATCACCATTGGGATGTCCGGT
CACACTATGACGAAGGCAAGTACTGTTATAGTAGATCCACCGAACTGTCT
ATCTGTCGGCCTGCGCCCCTCCATCCTTTTATCCCTTTATAGAGCTTTCC
AAATATACTTCTTATTGCTTGATGGCCTGTCATGTGCTTCTACTGTACAT
GGCTGGGTGTTTGTTTCACCTGCCATGTTTTGGCTGTCGGCCACGCAGTG
TTGGACATGCAATTTATTCACCCCCTGGAAAAATACGAATACTTGGCGTA
GTCGCCATGAAAACAAAAAAATATTCGCCTGAGTTTCAGAATGAGCGAGC
GCATAGAATGAAATACCCGCCCCTGTTCAATCGATTTACGAGTATTTTAG
CAGTCGTGGATGGCCCGGGGCACAGAATTCACGAGCTCATTCTGAAACTC
GGGCGAATATTTTCTATTTTTCGTGGCGAATACGCCAAGTATTCGTATTT
GTTCGGGGGGTGAATATATTCTAATGTCGGGATTATTGAGGCTACTGTAT
GTTGCCATCGTATCGACACATGGTGTATCGAGACTTGGAAAGTTGGATAT
TTGCGACTCCACATTCGAATGAAAAAATATGTTCAGTTCCCAAACCTGCC
AACAGGGCCCGTGTACATACTTCACAAGCGGTTAGTGTATTTACTGTCGT
ATTCAGCTGGACGTCACCTTGCAAGGGAGTTCAATCGTTGAATCTATATG
CGTATCAAACATTGGGCCTCTGTTCATTGACTCTGACTTTGATTCTGAAC
CGCTATCAACAGTGGTGAAGATCCACGACTGTGTCTCTAGTTAAAGGGTC
AAGTGCACATGTACGACTCTTTAGGTTTATGCAGTTTAGAGACTTGCAAA
GTGCCGCAAGTATTCATTCGTGCCAGCTGTCTACGTTCGCAGAATTTCCG
TTCGAGTCTGTCGTTGATTCATCACCTGTGCAGCTGCTGCGCTAGTCGCA
GCGGTGTGATGTTTTTACTTGGGAAACATTTTTTGTTGGTTGTGGTGTTT
GCAGATCAAAGCGCTTGAGGAGGATAGGGCTGTTGCTGCGGGAGGGGAGC
TTTTAGCGGAAGGGTTCGTCTATGGCGTTGCCGGGGCGCTTGGTGAGCAT
GCACACGCACAATCGTGGCCCAAAATGGATGATGACCGGGTGGCGTGATC
ACGATTCCCGCGACATCTATGGTGTTAATTCAGTTGGCATCGCTGGATGA
ATTGGATTTAGCACAATCTCCTCGTTCACTTGGCGTGATGTGCTGTCGCC
GGCAGCGAATACTGAAGCGGGCAGTAGCCACAGCGAGAGGCTTGGGTTGA
ATTATGAGCTACAATTTCGGAGTTTGTATACGTGGTTGAAGGGTCGCATG
ACCTCTGCGAATTACACACAGCAATTGCAGAGAAGCGCGTGTAATTGTGA
TACCGCCTACGGTATGATGTCATGCGCTTAACACTCGAATGTAGGTAATA
AACATGGTTTCTGTGAACTACACATCGGGATTGTGTGCACTCTCTTGATT
CGTCGGTTTTGTGGGGGAACATACAAGCAGTGCTCCACGGGAGGAGGGTC
AAAACGCGTAGAATGCTTGTGTGCGGTGAGACTTCTACATTTCTCTATGA
ATGCGTGACATTTGTTTGTCATCCTCACCCTCCAAATATTTCAAACACAT
GGAACAACAGTCATATGGGAATACATGAGCAGCGCCAGCGATAAAGAAGC
AAAAGACGTGCTGGCTAAGGCGAAGAAGGCCAAAGAACAGGAGGGCCTAA
AGGATGCCTTGGAGGTGAGATGAACTTCATCACAGTATCGTACAAACTTT
ACTGCCCTATAATTACGCCCGCGTGTTGAAACATTTTTTAGTGCCTTCTA
TTTCAGAAACCTGGCCTTGCTGAGCTGTGCTAAGATTATTCACCAGCCGC
TCGTGCGATATCGCCTTCAGGATACTTGCAGCGGTATTGTATGAGTAGCC
GTTTGTTGCCGTCACTTGCTTGTGTCGGAACGAGTCAATAGGCAAAGCTA
AGGAAAAATGTAAAATGGTGCTGAAAAACGAGCAGGACGCGTGCTGTAAC
ACGAATGGTCGATTGAATCGGTGGGACTGTAGATGATAGATGACCACCTA
CACCTACGTTTTCCCCTAGTAATTTTTGTAGCACGAGTTGTAGAGTTTTT
CACATGTCCGTCGGATAAAATTCTACATTTTTTGCGGTTTCGGCGTTTTG
CACACGTCGCTCAGAACAGCTTCGTGTTGTTGAAAGAATCCTTGGCGAGC
ACGGTACGGCGTTCGTGGTAGACCAAACAGAGCAGCCAGAAAGCTTCCTG
GTGCCGGGTACATGGACACAATAGCATGAACTGTTTTAAGACGTGTTCTA
GAATGGTACACTAACGCTGATATTTTTTTTTGTTTTGCTGTGTTCTGCCG
GACGTGGATTTGCATCCTCAATATCAACATCGCAGGCTATTCAGCTCTAT
GATACATCTTTTGTTACTCTGTCAGGAATGTCATATTTAATAGTGCAACG
TTGTCGGAAGAAGGATAAGTGCGGTGAACCCCGAAACAGCGGTGCACACT
GTACTGGGCGATACAGCCCTGAGCCTGCTGGAGCTAGCTCCAAGGCATCG
GCCAATGTCGCGATCTCTAGGGTTGTGTATCGATACCGACATCGACCGAT
ACATCGTCCGATACATCGTCCGACGCAATATTATCTATCTATCGTCTCTT
TGGTACCGATATATCGGCGGTTGCCCTTACCGGCTATGTAGTACTGCCTA
TATGTCATTATCCATGAAGTGTAGGATTTTTTTTGCAAGCATTCGTCCGA
GTTTCAGTGTATGTGAGATGGCACATAAAAAGCACCATCACGCCCTTTTT
GATATTGCCCTCCTGGAAGTATTTTCCAAACCCGATTTTCTCGAGAAGCA
AGAGCCTGTACGGGATGCCGATCTGCTTTTCAATGTAAAGAAACACATGA
ATGTCTGTACGTGCAGCTCATTTGCTTCGTGAGCTACGGCGTGGATCTTC
GATTTCTCTAGTACAAAAAGACAGTGACATACAACCTACTGATACCACTG
TATTAATGTTTCTTTTTCGAAATTCTGCCATGTGTATCGATTTTCGATAA
TTGTCTTGATTCAAGTAAGAAGACATTCAGCAGCCTTGGTTCTATAAACG
ATACCGTTCAAGCTGCATGTGACAATGACGCAATCAATACAAATAGTCGT
TAATAAAAAATACACTAAATGGTTGAGTGCAACGTACTTGATTGTTTCAG
CAGTGTTAAACCGTAATGCGTCCTACACAGCAGCTAAACATGAACATTTG
CGATACGCAAGGTTTGTCTTCCCTCTCCCCGCTCCACCCAGAAATGGCAG
GTCCCAAGGTTTTTGTAAACTAAAGCGTTTCAGGAACGGAACTCGATCCC
GATAGTACTCCCCTGATATCATCGTCAAACATGAAGAAGGTTAATTGGTA
GTCTTGAATAACGTCTAGAGAGCAATTGGAGCTCCGTGTCCGTTGCTCGA
ATAGAATTGTAAACGAAGAAAACGGTGAAGCTTTCTGAGGAAATGTTGTG
CTTACCAAAAGTGCCTCGGAATACAATACTCTCGTGTGTGGTTCATTGTC
GAAAGCTATTCAGCGATAGCTATCAACGCTTGCTGGTTGTCGTTGTTATC
AAGCGTGGTCTCGTACTCTAGGCGTTGTGACCCTTCGCTCAAATACGTGA
GTCTATTTCTTGGATTTTAGTCTTTATCCGTTAATCCTGGTGTATAGTGC
GATATTGTCATTTTCCAGACGATGCGTCCCCATGCTTACTTGATGACCCA
TACCCACCCAATGGCGCTCCCGTTGGGTGAGTGCTTGATTTTGCTATACA
ACAGTCTCAGTTTTTCTCGGTCGTGATGTTTTACTCGGCATCGGTGAGCA
ATGGGGTGTGTCGTCTTTATGCTTTCCATGGTATTTACGCAAGTCAAAAG
TGCTAAAAATCGCATGGGAATTTCCCCGCTGAGGGTTTTTGCATGCCTTT
TTGGCGCTGCCTGGAGCACTTCTTAATCTTGACTCTTACGCTGCTGCTCT
TCACTCCTTGTAGTCCGGAGGTGAATTATGTAACTACGGCAGAAGCGATC
ATACTGAAGGTTTCAAAGGTCGTTATAGTGGAGCCCCAGCACCAGTATTT
CGGGAGTAAAAAATAGCGGTACTGGAGATGTACTCAGTCATCTAGTAATC
GATACTGTGGTACCTGGCGATACCGAATATCAGTGTTGTAAATAGCTGTG
GCGCTGCGGCGCGCCGCCGATGCGTTTTGAGGGCCACCGTAAATAACGGC
GGCGCAGTAGCTGATCCGGCGAAAAGTCGAGGGTAGCCGGTAGGTGCGAG
AGGTTTTCAGGATCCCCAATATTGGGTCTGATCTGCCAATTTATTCAAAA
CATTACCCCACAAAAGTACTCCTGTCTACACACACACACATACACACACA
CACACATATATATAGTAGCGTTATAACCGCGCTACTACGGTATGCCAGAC
TTCCCAACATCCTCCGAGAGCCAGAAAGAAGTAAAATCGAAGCCAAATGA
TTCACCCCCTCATTTTTGTTTATCCGGCGGTTCCTGCGAGAGGCTCGGCG
CCGCCTCGACCGGACGCCGAAGTGGCGGGAGCCATATTTCCGACCCTGCC
CAGAATCTCTCAGGAAACCGTTATGTCATTTTCCTCGGGAGATTTCGATG
GTCCGCTCCGTTTCCGGAAAGTTTCGGGAGAAATCTTTTTCCGCTTGATC
CGCGTGTCCTCGGGAGACCGCTCGTGATGTCATCTCCTGCAGATAGCTGT
TGGTCCTGTCCTTCGGTAGCGACCGCACATATCGAAGGCTCTCCCAGACA
TGTATTTTCCCACAAAAGCCTACTCGTTGGCAAAGCTACTAACCAATCAT
TGACCATGGCAAGTACTTATCCGTGAAGCACGACCCCGACGCCCACGCAT
GCACTCAACGCTCGTACACGTACTCTACCCTTTGAGCTCCTCTAACCCCA
TAATGAATTATGCTACAATAACTTGTTGTTTTTGGATCTTGGTTCCTCCG
CACTATTGTCACTCCTTCGGTATTATGTGGACGTATTGCTAAGGGAAAAT
AGTCATCTGTGCTAAAAACAGCCAACCTTGTCGAAGTATGGAAGAAATTA
CTCACAGTTTGTCCAATTGGAACAGCGTCTCTCTTTTAACACGCCGAAAA
CAGACCTTTTGGCCCCTTTCCACTCCAGAGCAGTGAGTCCACAGAGATAG
CCACAACTGACTTACTTATCTGCCACCCATCCGGCGAGGCAGTTGCGATA
GTGGTGATTATTCTAGAGGTAGTATTTGGGTTGAACATCCAGGAGCATGA
CAAAAGAACGCAGTGCAAGTAGTAGAGTATGGCGTGTCCATGATGCACAA
TTGCAGCAAAGCGGTAAGAAACACCTGTAGCGACCAGCATAGACAGAGCA
GCAGAACAGTACTGCTGTGCTGCACGCAGCCACGCAGCACCAGGCATATG
CACGTCAGCTGGAGGGGTGTGACCTGCCCAGTCGCGACCTCGAACCGCGA
CTCACTGCTGGTGGAGGAAGAAGCTGGTGTACCAATGCCGATTCGCTAGC
AGTGGTCCTCGCAACGACTGGCAGACAGCTATGACAGCACCTGCGTCTAG
TCAGCCTGCACTGCAGCAGATAGTGCATTTTCAAGGGGATATTTAAGGGA
AAACATGGAACTACGCGGCCAGGGCTTTTATTGGAAGACTCTTCCCTTGA
CCCCAGTTGAAGTGAATTATCAAATCGCAAGGTGTACACCCCTTGCTCAT
GTGTCGACCTATCGAGTGGGTCGTTCTTGTAGTGAGCTGTGTCGATTTCA
GAGGCAGCATTTGACCTGAAGCAACATCAGCTGGCATGGGCTGCAACCTG
TAGGCCACACTCCCGAACTGGCCCTATAAATACAGCATGACGGATTTATT
GGCTCTGGGACCATCTATCATCTCAAATGTCGTTCCCAAGATCAGCCTGA
TACATGCCCACGTCGCTCTTGGCTCTTATGTCGCGTAGAGCTGAGGCAGC
GTGCAGGGCTTGATTTGGCTGCTGCGATTTCCCGTCGATCCATGGATAAT
GACCTGTACAACATGTCTTCTAGTCCCTGTAAGAATGTCTTCTGTGGCGA
GAGCATTTTTTTTGGTGTTTTCGTGTGGTTTGCAACACCGTAGTGTGTAC
AGTACAACGCAATTCCATTAACTACGTTTACAGGAAGCGGGGCGGGGTGA
TTTGGAGAATACCGTAAGACAGGGGCAATTTACAACAAATGTCTGCAGAG
GGCGAGCCCGCTTCTTCACATGTGCGTTTGTAATTCAATTCCAAATACTC
GAAGATGTACGCAATAAATTCACGATGGCGTCCTGGCCGTATCGTAACTC
AGGCAATCAACCGGCGACTAACAGTGTTGGAAATGACGAGACTGGAGCGT
GCTGAGGATCAAAGCGACACGCTGCACCGCGATGACGTCAAAGCCTCGAT
ATCATTTCCTCTCGTTAGATGGATCCCATTCCGACCGCTAGGTACAGAGG
TGCACAAGGCAGCGGCAGAGGGCAGCACTTTACCTGACCTTGAAGAGGGT
AGAGAAAATGGCCGTGGTGTCAGGTCTGATAAATGCGAATCTCAACAAAC
CGGGGTGGTAAGACAGGGGAGCGAGGGTGGACAGGCAGGAACAAGATCGA
GTAATCCGCCAAATAGAGTCCAGGAGAATACGGAGTCAGAGGCTAGAATA
GGATCCACTTTAACAAGCGAAGGGAATGCGCGTGAGTTGAAAGATCGAGG
TGCTGCGGTCAAATACAATGGGAGCGGACGCGGATTTTAATTGACTTGAG
GAGATCGGTGTAATTATGTTGGGTCCACGGGCTGGTGCAATTATTTTGTA
GCTCGATAAATCCACGGTGCGCATCTTGATTTATAACGCTTGTCACTCGG
TGTATTCGGGGGCGCCGGGGAGATTTGCTTTGAGTGGCATGTTATACTCC
CTCTGTTCCATAGGTCTGGGCACTAGAGAATTTTTTCCATATCTCCTCGG
GATGATGTTCGATTTAAAAATGCATTGTTGCGTTGGATTCTGTGACGTTT
TTCTGATGTAATTCAATGCATGTTTTTTA back to topCoding sequence (CDS) from alignment at H-paniculata_contig11905:246..7474+ >mRNA_H-paniculata_contig11905.1220.1 ID=mRNA_H-paniculata_contig11905.1220.1|Name=mRNA_H-paniculata_contig11905.1220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig11905:246..7474+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGTCAAACAGTCAACATGATATCCGTCAGGATCACCATTGGGATGTC CGGTCACACTATGACGAAGATGGGTCAAACAGTCAACATGATATCCGTCA GGATCACCATTGGGATGTCCGGTCACACTATGACGAAGATCAAAGCGCTT GAGGAGGATAGGGCTGTTGCTGCGGGAGGGGAGCTTTTAGCGGAAGGGTT CGTCTATGGCGTTGCCGGGGCGCTTGATCAAAGCGCTTGAGGAGGATAGG GCTGTTGCTGCGGGAGGGGAGCTTTTAGCGGAAGGGTTCGTCTATGGCGT TGCCGGGGCGCTTGTCATATGGGAATACATGAGCAGCGCCAGCGATAAAG AAGCAAAAGACGTGCTGGCTAAGGCGAAGAAGGCCAAAGAACAGGAGGGC CTAAAGGATGCCTTGGAGTCATATGGGAATACATGAGCAGCGCCAGCGAT AAAGAAGCAAAAGACGTGCTGGCTAAGGCGAAGAAGGCCAAAGAACAGGA GGGCCTAAAGGATGCCTTGGAGGCAATCAACCGGCGACTAACAGTGTTGG AAATGACGAGACTGGAGCGTGCTGAGGATCAAAGCGACACGCTGCACCGC GATGACGTCAAAGCCTCGATATCATTTCCTCTCGTTAGATGGATCCCATT CCGACCGCTAGGTACAGAGGTGCACAAGGCAGCGGCAGAGGGCAGCACTT TACCTGACCTTGAAGAGGGTAGAGAAAATGGCCGTGGTGTCAGGTCTGAT AAATGCGAATCTCAACAAACCGGGGTGGTAAGACAGGGGAGCGAGGGTGG ACAGGCAGGAACAAGATCGAGTAATCCGCCAAATAGAGTCCAGGAGAATA CGGAGTCAGAGGCTAGAATAGGATCCACTTTAACAAGCGAAGGGAATGCG CGTGAGTTGAAAGATCGAGGTGCTGCGGTCAAATACAATGGGAGCGGACG CGGATTTTAAGCAATCAACCGGCGACTAACAGTGTTGGAAATGACGAGAC TGGAGCGTGCTGAGGATCAAAGCGACACGCTGCACCGCGATGACGTCAAA GCCTCGATATCATTTCCTCTCGTTAGATGGATCCCATTCCGACCGCTAGG TACAGAGGTGCACAAGGCAGCGGCAGAGGGCAGCACTTTACCTGACCTTG AAGAGGGTAGAGAAAATGGCCGTGGTGTCAGGTCTGATAAATGCGAATCT CAACAAACCGGGGTGGTAAGACAGGGGAGCGAGGGTGGACAGGCAGGAAC AAGATCGAGTAATCCGCCAAATAGAGTCCAGGAGAATACGGAGTCAGAGG CTAGAATAGGATCCACTTTAACAAGCGAAGGGAATGCGCGTGAGTTGAAA GATCGAGGTGCTGCGGTCAAATACAATGGGAGCGGACGCGGATTTTAA back to top
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