mRNA_H-paniculata_contig49883.12199.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49883.12199.1
Unique NamemRNA_H-paniculata_contig49883.12199.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: D7G3X6_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X6_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.480e-25
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1
Query:    1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTYAQ 180
            EKDR LGGDIAVAFFGFGAPASLLVGWLTD++DRRKLF+ IV +GE+G LATVFV T++Q
Sbjct:   81 EKDRHLGGDIAVAFFGFGAPASLLVGWLTDVIDRRKLFVAIVAIGEMGTLATVFVTTFSQ 140          
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: A0A6H5KP69_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP69_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.680e-23
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1
Query:    1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTYAQ 180
            EKDR LGGDIAVAFFGFGAPAS+LVGWLTD++DRRKLF+ IV LGE+G LATVFV T++Q
Sbjct:   81 EKDRHLGGDIAVAFFGFGAPASVLVGWLTDVIDRRKLFVAIVALGEMGTLATVFVTTFSQ 140          
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: A0A1Z5KAQ2_FISSO (MFS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAQ2_FISSO)

HSP 1 Score: 69.7 bits (169), Expect = 2.390e-12
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTYAQASECQA 198
            ++D+KLGG+IA+AFF  GAPAS LVG L D  +R KLF   V +GE+G + T +V TY+Q   C+A
Sbjct:  119 QRDKKLGGEIALAFFVLGAPASYLVGCLGDAYNRTKLFAATVCIGELGCILTYWVQTYSQLYVCRA 184          
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: B8CDW1_THAPS (Transporter (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDW1_THAPS)

HSP 1 Score: 68.2 bits (165), Expect = 8.310e-12
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKL-FIVIVVLGEIGALATVFVDTYAQASECQA 198
            E+D+KLGGDIA+AFF  G PAS +VG L D+++RR L F+ ++++GE   +AT +V TY Q   C+A
Sbjct:  108 ERDKKLGGDIAIAFFMVGVPASFIVGCLADVMNRRSLLFLWVILIGEGACMATYWVQTYTQLYWCRA 174          
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: A0A7S0V9L3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V9L3_9CRYP)

HSP 1 Score: 66.6 bits (161), Expect = 2.870e-11
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTY 174
            E+D KLGG+I+ AFF  G P +LLVGWLTD+V+R+ LF+ ++ LG   ALAT+ V  +
Sbjct:   78 ERDAKLGGEISFAFFVMGGPVALLVGWLTDLVERKVLFVALLFLGLCPALATILVTEF 135          
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: B8BU21_THAPS (MFS domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BU21_THAPS)

HSP 1 Score: 65.5 bits (158), Expect = 7.370e-11
Identity = 33/65 (50.77%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTYAQASECQ 195
            E D KLGG +A+ FF  GAPAS L+GWL D ++R  LF   V +GE G L   FV TY Q   C+
Sbjct:  115 ECDIKLGGLVALGFFFVGAPASFLIGWLADSINRSPLFAATVFIGEFGCLLVYFVQTYPQLYACR 179          
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: A0A1E7ENH1_9STRA (MFS family transporter: metabolite n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ENH1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.970e-11
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTYAQASECQA 198
            E+DRKLGGDI++AFF  GAPAS +VG L D  DR K+F   V +GE+    T FV +Y Q   C+A
Sbjct:   55 ERDRKLGGDISLAFFLLGAPASFVVGMLADTQDRSKVFGWTVFIGEMACFLTYFVRSYNQLYICRA 120          
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: A0A2R5GER2_9STRA (Synaptic vesicle glycoprotein 2A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GER2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.010e-10
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    4 KDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTY 174
            +DRKL GDI +AFF  G   SL+VG+LTD+V+RR    V++VLGE   LAT F  TY
Sbjct:   97 RDRKLVGDITLAFFVLGGTISLIVGYLTDVVNRRNTLAVVIVLGETSCLATYFTTTY 153          
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: K0TLA4_THAOC (MFS domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLA4_THAOC)

HSP 1 Score: 64.7 bits (156), Expect = 1.380e-10
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRK-LFIVIVVLGEIGALATVFVDTYAQ 180
            E+DRKLGGDI+VAF+  G PA+++VG L D+V+RR  LF+V V++GE     T F  TY Q
Sbjct:   67 ERDRKLGGDISVAFYMIGVPAAMIVGCLADVVERRSFLFLVTVMIGEGSCCLTYFARTYGQ 127          
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: B7FPZ2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FPZ2_PHATC)

HSP 1 Score: 63.5 bits (153), Expect = 3.500e-10
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTYAQASECQA 198
            ++D+KLGGDIA+AFF  GAPAS +VG L D  +R KLF   V +GE   LAT +  TY Q   C+A
Sbjct:   18 QRDKKLGGDIALAFFVLGAPASFVVGSLADSFNRPKLFAWTVGIGEGACLATYWTTTYPQLYVCRA 83          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3X6_ECTSI1.480e-2580.00MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KP69_9PHAE1.680e-2380.00MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A1Z5KAQ2_FISSO2.390e-1253.03MFS domain-containing protein n=2 Tax=Fistulifera ... [more]
B8CDW1_THAPS8.310e-1250.75Transporter (Fragment) n=1 Tax=Thalassiosira pseud... [more]
A0A7S0V9L3_9CRYP2.870e-1153.45Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
B8BU21_THAPS7.370e-1150.77MFS domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A1E7ENH1_9STRA9.970e-1153.03MFS family transporter: metabolite n=1 Tax=Fragila... [more]
A0A2R5GER2_9STRA1.010e-1056.14Synaptic vesicle glycoprotein 2A n=1 Tax=Hondaea f... [more]
K0TLA4_THAOC1.380e-1054.10MFS domain-containing protein n=1 Tax=Thalassiosir... [more]
B7FPZ2_PHATC3.500e-1053.03Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49883contigH-paniculata_contig49883:347..544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue4.4e-10
Seed eggNOG ortholog35128.Thaps264410
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sugar (and other) transporter
EggNOG OGs2XAEP@2836,KOG0255@1,KOG0255@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930468.2255466-CDS-H-paniculata_contig49883:346..5441622930468.2255466-CDS-H-paniculata_contig49883:346..544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49883 347..544 +
1691481305.033589-CDS-H-paniculata_contig49883:346..5441691481305.033589-CDS-H-paniculata_contig49883:346..544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49883 347..544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49883.12199.1prot_H-paniculata_contig49883.12199.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49883 347..544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49883.12199.1

>prot_H-paniculata_contig49883.12199.1 ID=prot_H-paniculata_contig49883.12199.1|Name=mRNA_H-paniculata_contig49883.12199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGAL
ATVFVDTYAQASECQA
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mRNA from alignment at H-paniculata_contig49883:347..544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49883.12199.1 ID=mRNA_H-paniculata_contig49883.12199.1|Name=mRNA_H-paniculata_contig49883.12199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig49883:347..544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAGGATCGAAAGCTAGGCGGAGACATCGCGGTAGCATTTTTCGGATT CGGAGCGCCGGCTTCGCTGCTCGTCGGCTGGCTGACGGACATAGTCGATC GCCGAAAGCTGTTCATCGTGATCGTAGTTCTCGGCGAAATTGGAGCGCTA GCGACGGTGTTTGTAGACACATATGCTCAGGCAAGTGAGTGCCAGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig49883:347..544+

>mRNA_H-paniculata_contig49883.12199.1 ID=mRNA_H-paniculata_contig49883.12199.1|Name=mRNA_H-paniculata_contig49883.12199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig49883:347..544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAGGATCGAAAGCTAGGCGGAGACATCGCGGTAGCATTTTTCGGATT
CGGAGCGCCGGCTTCGCTGCTCGTCGGCTGGCTGACGGACATAGTCGATC
GCCGAAAGCTGTTCATCGTGATCGTAGTTCTCGGCGAAATTGGAGCGCTA
GCGACGGTGTTTGTAGACACATATGCTCAGGCAAGTGAGTGCCAGGCGGA
AAAGGATCGAAAGCTAGGCGGAGACATCGCGGTAGCATTTTTCGGATTCG
GAGCGCCGGCTTCGCTGCTCGTCGGCTGGCTGACGGACATAGTCGATCGC
CGAAAGCTGTTCATCGTGATCGTAGTTCTCGGCGAAATTGGAGCGCTAGC
GACGGTGTTTGTAGACACATATGCTCAGGCAAGTGAGTGCCAGGCG
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