mRNA_H-paniculata_contig49883.12199.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: D7G3X6_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X6_ECTSI) HSP 1 Score: 101 bits (252), Expect = 1.480e-25 Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1
Query: 1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTYAQ 180
EKDR LGGDIAVAFFGFGAPASLLVGWLTD++DRRKLF+ IV +GE+G LATVFV T++Q
Sbjct: 81 EKDRHLGGDIAVAFFGFGAPASLLVGWLTDVIDRRKLFVAIVAIGEMGTLATVFVTTFSQ 140
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: A0A6H5KP69_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP69_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.680e-23 Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1
Query: 1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTYAQ 180
EKDR LGGDIAVAFFGFGAPAS+LVGWLTD++DRRKLF+ IV LGE+G LATVFV T++Q
Sbjct: 81 EKDRHLGGDIAVAFFGFGAPASVLVGWLTDVIDRRKLFVAIVALGEMGTLATVFVTTFSQ 140
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: A0A1Z5KAQ2_FISSO (MFS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAQ2_FISSO) HSP 1 Score: 69.7 bits (169), Expect = 2.390e-12 Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTYAQASECQA 198
++D+KLGG+IA+AFF GAPAS LVG L D +R KLF V +GE+G + T +V TY+Q C+A
Sbjct: 119 QRDKKLGGEIALAFFVLGAPASYLVGCLGDAYNRTKLFAATVCIGELGCILTYWVQTYSQLYVCRA 184
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: B8CDW1_THAPS (Transporter (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDW1_THAPS) HSP 1 Score: 68.2 bits (165), Expect = 8.310e-12 Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKL-FIVIVVLGEIGALATVFVDTYAQASECQA 198
E+D+KLGGDIA+AFF G PAS +VG L D+++RR L F+ ++++GE +AT +V TY Q C+A
Sbjct: 108 ERDKKLGGDIAIAFFMVGVPASFIVGCLADVMNRRSLLFLWVILIGEGACMATYWVQTYTQLYWCRA 174
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: A0A7S0V9L3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V9L3_9CRYP) HSP 1 Score: 66.6 bits (161), Expect = 2.870e-11 Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTY 174
E+D KLGG+I+ AFF G P +LLVGWLTD+V+R+ LF+ ++ LG ALAT+ V +
Sbjct: 78 ERDAKLGGEISFAFFVMGGPVALLVGWLTDLVERKVLFVALLFLGLCPALATILVTEF 135
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: B8BU21_THAPS (MFS domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BU21_THAPS) HSP 1 Score: 65.5 bits (158), Expect = 7.370e-11 Identity = 33/65 (50.77%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTYAQASECQ 195
E D KLGG +A+ FF GAPAS L+GWL D ++R LF V +GE G L FV TY Q C+
Sbjct: 115 ECDIKLGGLVALGFFFVGAPASFLIGWLADSINRSPLFAATVFIGEFGCLLVYFVQTYPQLYACR 179
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: A0A1E7ENH1_9STRA (MFS family transporter: metabolite n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ENH1_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 9.970e-11 Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1
Query: 1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTYAQASECQA 198
E+DRKLGGDI++AFF GAPAS +VG L D DR K+F V +GE+ T FV +Y Q C+A
Sbjct: 55 ERDRKLGGDISLAFFLLGAPASFVVGMLADTQDRSKVFGWTVFIGEMACFLTYFVRSYNQLYICRA 120
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: A0A2R5GER2_9STRA (Synaptic vesicle glycoprotein 2A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GER2_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.010e-10 Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 4 KDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTY 174
+DRKL GDI +AFF G SL+VG+LTD+V+RR V++VLGE LAT F TY
Sbjct: 97 RDRKLVGDITLAFFVLGGTISLIVGYLTDVVNRRNTLAVVIVLGETSCLATYFTTTY 153
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: K0TLA4_THAOC (MFS domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLA4_THAOC) HSP 1 Score: 64.7 bits (156), Expect = 1.380e-10 Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1
Query: 1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRK-LFIVIVVLGEIGALATVFVDTYAQ 180
E+DRKLGGDI+VAF+ G PA+++VG L D+V+RR LF+V V++GE T F TY Q
Sbjct: 67 ERDRKLGGDISVAFYMIGVPAAMIVGCLADVVERRSFLFLVTVMIGEGSCCLTYFARTYGQ 127
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Match: B7FPZ2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FPZ2_PHATC) HSP 1 Score: 63.5 bits (153), Expect = 3.500e-10 Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1
Query: 1 EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALATVFVDTYAQASECQA 198
++D+KLGGDIA+AFF GAPAS +VG L D +R KLF V +GE LAT + TY Q C+A
Sbjct: 18 QRDKKLGGDIALAFFVLGAPASFVVGSLADSFNRPKLFAWTVGIGEGACLATYWTTTYPQLYVCRA 83 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49883.12199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig49883.12199.1 >prot_H-paniculata_contig49883.12199.1 ID=prot_H-paniculata_contig49883.12199.1|Name=mRNA_H-paniculata_contig49883.12199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp EKDRKLGGDIAVAFFGFGAPASLLVGWLTDIVDRRKLFIVIVVLGEIGALback to top mRNA from alignment at H-paniculata_contig49883:347..544+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig49883.12199.1 ID=mRNA_H-paniculata_contig49883.12199.1|Name=mRNA_H-paniculata_contig49883.12199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig49883:347..544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig49883:347..544+ >mRNA_H-paniculata_contig49883.12199.1 ID=mRNA_H-paniculata_contig49883.12199.1|Name=mRNA_H-paniculata_contig49883.12199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig49883:347..544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |