mRNA_H-paniculata_contig4988.12198.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4988.12198.1 vs. uniprot
Match: D8LEB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB4_ECTSI) HSP 1 Score: 455 bits (1170), Expect = 1.490e-149 Identity = 320/642 (49.84%), Postives = 378/642 (58.88%), Query Frame = 3
Query: 78 MIFSSAPHWLEFVPAEGLAVCEYVCSTFRIAAQEDRLWKEACHRRWTRVNAGT---------------GGYRRSFASLNGWRTP--RFRRTILTT------TAPSRTRSSQAAA-GGSHARNISAMDVGPSKVVVCSADTAWFYKVSTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGSVPSDAHVEPQAPWGCRVLGWNVTEARFSADERRCYFGTVSGLIYSHEVG----DAPRGRRDSSSSRPHRRPIVSNFLTTASGSPVAVRQIVQNVEGGSAAGAKLGVLCRPPSGWQPNLDGVDAGGYLILVDTEAQATARTMRLSDGTLGGEKFPSMTCGGAAVSLAAVGSSGSTSGMPLAAGG--EAFAVGYGGGAVTLLDGRCRERGGMVGGFVTSHRWLERVRCAGYLLMTSYGRFKFIETWDLRKLPSRG--ECPYANTGRVVSRSRPPPRTADLTCAGHAPDFWVAPHGLTVAVYGAPRKSQSFGARHSFWSWPTAKDRLLFVPQTDPLNFSRGAERMGRRGGGDXXXSAGAGVELSVPGVVNDSDYRLKLSTGIKFCDTHMATVLDESRVLVDE--VMGSETSG-GARGEEGVRSVHLSA 1898
++ SSA HWLEF+PAEG+A+C VC+ + AA+EDRLWK+ CHRRW RVN GG++ ++ASLNGWR P R RRTIL+T T TR +Q A GG A NIS MDVGP +VVVCSAD AW+Y V + XXXXXXXXXXXXXXXXXXXXXXXXX G ++ VTEAR+S D RC+FGTVSG I+ H+ G D R SS + P ++ L++ +GSPVAVRQ+V EGG G++LGVLCRP WQPNL+G GGYL LVDT+AQA R M L G+LGG FP+M GGAAVS+A + S+ GMP + G E FAVG+ GG V + D RC E GGMVGGF T HRWL+R+R AG LLM SYGR K IETWD+R+LPSR E P G R R PP ADL C ++PDFWV PHGL VAV+GAPR SQ FGA+H+FW WP + V TDP A RG G G V VPGVVNDS YR+ LSTG+KF DTHMATVLD SRVLVDE VM + G G R GV S+ L+A
Sbjct: 15 LLISSAAHWLEFLPAEGVAMCCGVCAGLKQAAEEDRLWKDLCHRRWRRVNVDVARPNNRKCDGGGSVIGGHQAAYASLNGWRDPTNRLRRTILSTAPNDAVTGRRFTRGAQGVAPGGGPATNISGMDVGPCRVVVCSADFAWYYNVRQGSNTSRQRRQQPRDATSDSASIDSXXXXXXXXXXXXXXXXXXXXXXXXXSSRTLR---------------------------GFQLPSSGVTEARYSGDGERCFFGTVSGHIFVHKCGGDDDDKDGERHRSSEAVEPWTPTLA--LSSPTGSPVAVRQVVARFEGGCPGGSRLGVLCRPTLVWQPNLEGSGEGGYLFLVDTQAQAVTRQMNLGGGSLGGLTFPTMERGGAAVSMAPL----SSEGMPFGSSGSGELFAVGFAGGTVAVFDARCHEGGGMVGGFTTRHRWLKRLRSAGPLLMNSYGRTKNIETWDMRRLPSRATHEPP---PGLPSPRLRAPPCLADLACPANSPDFWVEPHGLCVAVHGAPRHSQRFGAKHAFWPWPRQTGGVATV-STDP-----NAPACSARGDGGGVEIPGRCVV--VPGVVNDSGYRMCLSTGVKFTDTHMATVLDSSRVLVDEMAVMPRVSRGSGDREGAGVTSLFLAA 612
BLAST of mRNA_H-paniculata_contig4988.12198.1 vs. uniprot
Match: A0A6H5KAW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW4_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 5.270e-9 Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = 3
Query: 168 AAQEDRLWKEACHRRWTRVNAGT---------------GGYRRSFASLNGWRTP--RFRRTILTT 311
AAQEDRLWK+ CHRRW RVN GG++ ++ASLNGWR P R RRTIL+T
Sbjct: 5 AAQEDRLWKDLCHRRWRRVNVDVARPNNRTCDGGGGVIGGHQAAYASLNGWRDPTNRLRRTILST 69 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4988.12198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4988.12198.1 >prot_H-paniculata_contig4988.12198.1 ID=prot_H-paniculata_contig4988.12198.1|Name=mRNA_H-paniculata_contig4988.12198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=631bp MEGEGESDGALSYTNGMIFSSAPHWLEFVPAEGLAVCEYVCSTFRIAAQEback to top mRNA from alignment at H-paniculata_contig4988:825..12296+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4988.12198.1 ID=mRNA_H-paniculata_contig4988.12198.1|Name=mRNA_H-paniculata_contig4988.12198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11472bp|location=Sequence derived from alignment at H-paniculata_contig4988:825..12296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4988:825..12296+ >mRNA_H-paniculata_contig4988.12198.1 ID=mRNA_H-paniculata_contig4988.12198.1|Name=mRNA_H-paniculata_contig4988.12198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3786bp|location=Sequence derived from alignment at H-paniculata_contig4988:825..12296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |