mRNA_H-paniculata_contig4986.12193.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4986.12193.1
Unique NamemRNA_H-paniculata_contig4986.12193.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4986.12193.1 vs. uniprot
Match: A0A6H5JI39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI39_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.950e-28
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 1
Query:   34 AWPNLESRAVDFLPHAFLLYPDRDYCVLTVPSVGAESVFLRNFSPVPAKPGLAFNHVLYITHRWE 228
            A   LESRA DFLPHAFLLYPDRDYCVLT+PSVGAESV LR+FSPVPA+PG AFNHVLY+ HR E
Sbjct:   15 AGARLESRAADFLPHAFLLYPDRDYCVLTLPSVGAESVLLRHFSPVPARPGSAFNHVLYVMHRLE 79          
BLAST of mRNA_H-paniculata_contig4986.12193.1 vs. uniprot
Match: D7G5V1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V1_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 4.970e-28
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 1
Query:   43 NLESRAVDFLPHAFLLYPDRDYCVLTVPSVGAESVFLRNFSPVPAKPGLAFNHVLYITHRWEWGVN 240
             LESRA DFLPHAFLLYPDRDYCVLT+PSVGAESV LR+FSPVPA+PG AFNHVLY+ H    GV+
Sbjct:  241 RLESRAADFLPHAFLLYPDRDYCVLTLPSVGAESVLLRHFSPVPARPGSAFNHVLYVMHSHRAGVS 306          
BLAST of mRNA_H-paniculata_contig4986.12193.1 vs. uniprot
Match: A0A835ZCT4_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 7.320e-16
Identity = 38/71 (53.52%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   43 NLESRAVDFLPHAFLLYPDRDYCVLTVPSV-----------GAESVFLRNFSPVPAKPGLAFNHVLYITHR 222
             L+SRAVDFLPH F ++PDRDYCVLTVP             GA +  LR+F+P  AKP  AF H LY+ HR
Sbjct:  657 QLQSRAVDFLPHMFRMFPDRDYCVLTVPCAPARGVMGGPVRGASAPLLRHFAPARAKPDSAFGHALYVMHR 727          
BLAST of mRNA_H-paniculata_contig4986.12193.1 vs. uniprot
Match: A0A0L0DNW5_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DNW5_THETB)

HSP 1 Score: 68.2 bits (165), Expect = 1.570e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   49 ESRAVDFLPHAFLLYPDRDYCVLTVPSVGAESVFLRNFSPVPAKPGLAFNHVLYITHR 222
            ESR+VDFLP AF L+PDR+YC+LT+P   AE   LR F  V  K    F H+LYI HR
Sbjct:  455 ESRSVDFLPLAFELFPDREYCILTLPHEVAEFPLLRAFGTVKPKSISTFPHMLYILHR 512          
BLAST of mRNA_H-paniculata_contig4986.12193.1 vs. uniprot
Match: UPI00148C9368 (cilia- and flagella-associated protein 61 n=2 Tax=Hippoglossus TaxID=8266 RepID=UPI00148C9368)

HSP 1 Score: 67.0 bits (162), Expect = 4.000e-11
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   49 ESRAVDFLPHAFLLYPDRDYCVLTVPSVGAESVFLRNFSPVPAKPGLAFNHVLYITHR 222
            E R+VDF+P+ F L+P RD+CV TVPS+ AE   L++F  VP +   +  H LY++HR
Sbjct:  319 EMRSVDFIPYVFKLFPHRDFCVFTVPSLSAECPLLQSFLRVPPRANSSLVHELYVSHR 376          
BLAST of mRNA_H-paniculata_contig4986.12193.1 vs. uniprot
Match: UPI00106C2AAB (LOW QUALITY PROTEIN: cilia- and flagella-associated protein 61-like n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C2AAB)

HSP 1 Score: 66.2 bits (160), Expect = 7.460e-11
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   49 ESRAVDFLPHAFLLYPDRDYCVLTVPSVGAESVFLRNFSPVPAKPGLAFNHVLYITHRW 225
            E+R++DFLP AF L+PD+DYCV+T+P +  E   +  F+ V  K     +H LY+ HRW
Sbjct:  299 EARSMDFLPAAFKLFPDKDYCVITMPHIVNEFPLVHEFTRVTPKVDATISHELYVFHRW 357          
BLAST of mRNA_H-paniculata_contig4986.12193.1 vs. uniprot
Match: A0A4W3K2E6_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3K2E6_CALMI)

HSP 1 Score: 63.9 bits (154), Expect = 8.950e-11
Identity = 30/58 (51.72%), Postives = 35/58 (60.34%), Query Frame = 1
Query:   49 ESRAVDFLPHAFLLYPDRDYCVLTVPSVGAESVFLRNFSPVPAKPGLAFNHVLYITHR 222
            ESR+ DFLP+ F LYPDRDYCV+TVP V  E   L+ F  +         H LYI HR
Sbjct:  114 ESRSQDFLPYIFDLYPDRDYCVITVPHVVPEFPLLKEFVRITPYSNTTLPHELYIAHR 171          
BLAST of mRNA_H-paniculata_contig4986.12193.1 vs. uniprot
Match: A0A0P7UGL8_SCLFO (DUF4821 domain-containing protein n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7UGL8_SCLFO)

HSP 1 Score: 65.1 bits (157), Expect = 1.870e-10
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   49 ESRAVDFLPHAFLLYPDRDYCVLTVPSVGAESVFLRNFSPVPAKPGLAFNHVLYITHR 222
            E+R+VDFLP+ F L+PDRD+CV++VP +  E   L+ F  V  +P  +  H LYI HR
Sbjct:  364 ETRSVDFLPYMFALFPDRDFCVISVPMMVPEFPLLKRFLRVTPRPASSLPHELYICHR 421          
BLAST of mRNA_H-paniculata_contig4986.12193.1 vs. uniprot
Match: UPI001A99918D (cilia- and flagella-associated protein 61 isoform X1 n=3 Tax=Xiphias gladius TaxID=8245 RepID=UPI001A99918D)

HSP 1 Score: 65.1 bits (157), Expect = 1.910e-10
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   43 NLESRAVDFLPHAFLLYPDRDYCVLTVPSVGAESVFLRNFSPVPAKPGLAFNHVLYITHR 222
            N E R+VDF+P+ F L+PD D+CV+TVP++  E   L++F  VP +   +  H LY+ HR
Sbjct:  326 NYEMRSVDFIPYVFKLFPDLDFCVMTVPTLSPEFPLLQSFLRVPPRATRSLPHELYVFHR 385          
BLAST of mRNA_H-paniculata_contig4986.12193.1 vs. uniprot
Match: A0A7S0MTN0_9CHLO (Hypothetical protein n=2 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MTN0_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 3.510e-10
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   49 ESRAVDFLPHAFLLYPDRDYCVLTVPSVGAESVFLRNFSPVPAKPGLAFNHVLYITHR 222
            ++++ D L  AF  +P++DYC+LT+P    E V LR FS VPA P   F  VLY+THR
Sbjct:   47 DTQSEDLLAPAFEAFPEKDYCLLTIPHEATEPVLLRTFSRVPANPTSMFPEVLYLTHR 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4986.12193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI39_9PHAE1.950e-2881.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5V1_ECTSI4.970e-2878.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCT4_9STRA7.320e-1653.52AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A0L0DNW5_THETB1.570e-1156.90Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
UPI00148C93684.000e-1148.28cilia- and flagella-associated protein 61 n=2 Tax=... [more]
UPI00106C2AAB7.460e-1145.76LOW QUALITY PROTEIN: cilia- and flagella-associate... [more]
A0A4W3K2E6_CALMI8.950e-1151.72Uncharacterized protein n=1 Tax=Callorhinchus mili... [more]
A0A0P7UGL8_SCLFO1.870e-1048.28DUF4821 domain-containing protein n=1 Tax=Scleropa... [more]
UPI001A99918D1.910e-1045.00cilia- and flagella-associated protein 61 isoform ... [more]
A0A7S0MTN0_9CHLO3.510e-1048.28Hypothetical protein n=2 Tax=Pyramimonas obovata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4986contigH-paniculata_contig4986:695..937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue3.9e-24
Seed eggNOG ortholog2880.D7G5V1
Preferred nameCFAP61
Hectar predicted targeting categoryother localisation
GOsGO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0030030,GO:0031514,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120036,GO:0120038
EggNOG free text desc.cilium movement
EggNOG OGs2CMWM@1,2QSEC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size243
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930467.1759884-CDS-H-paniculata_contig4986:694..9371622930467.1759884-CDS-H-paniculata_contig4986:694..937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4986 695..937 -
1691481304.5614107-CDS-H-paniculata_contig4986:694..9371691481304.5614107-CDS-H-paniculata_contig4986:694..937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4986 695..937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4986.12193.1prot_H-paniculata_contig4986.12193.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4986 695..937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4986.12193.1

>prot_H-paniculata_contig4986.12193.1 ID=prot_H-paniculata_contig4986.12193.1|Name=mRNA_H-paniculata_contig4986.12193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MYIYRVLNVTLAWPNLESRAVDFLPHAFLLYPDRDYCVLTVPSVGAESVF
LRNFSPVPAKPGLAFNHVLYITHRWEWGVN*
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mRNA from alignment at H-paniculata_contig4986:695..937-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4986.12193.1 ID=mRNA_H-paniculata_contig4986.12193.1|Name=mRNA_H-paniculata_contig4986.12193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig4986:695..937- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATATTTATCGTGTTCTGAACGTCACTCTTGCCTGGCCCAACTTGGA GTCGCGGGCGGTGGATTTCCTTCCGCATGCCTTCCTCCTCTATCCCGACC GGGACTACTGCGTGCTCACGGTGCCGTCGGTGGGGGCGGAGAGCGTTTTC CTGAGGAACTTTTCTCCCGTACCGGCCAAGCCTGGATTAGCTTTCAACCA TGTCCTTTACATCACGCATCGGTGGGAATGGGGTGTCAACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4986:695..937-

>mRNA_H-paniculata_contig4986.12193.1 ID=mRNA_H-paniculata_contig4986.12193.1|Name=mRNA_H-paniculata_contig4986.12193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig4986:695..937- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATATTTATCGTGTTCTGAACGTCACTCTTGCCTGGCCCAACTTGGA
GTCGCGGGCGGTGGATTTCCTTCCGCATGCCTTCCTCCTCTATCCCGACC
GGGACTACTGCGTGCTCACGGTGCCGTCGGTGGGGGCGGAGAGCGTTTTC
CTGAGGAACTTTTCTCCCGTACCGGCCAAGCCTGGATTAGCTTTCAACCA
TGTCCTTTACATCACGCATCGGTGGGAATGGGGTGTCAACTGAATGTATA
TTTATCGTGTTCTGAACGTCACTCTTGCCTGGCCCAACTTGGAGTCGCGG
GCGGTGGATTTCCTTCCGCATGCCTTCCTCCTCTATCCCGACCGGGACTA
CTGCGTGCTCACGGTGCCGTCGGTGGGGGCGGAGAGCGTTTTCCTGAGGA
ACTTTTCTCCCGTACCGGCCAAGCCTGGATTAGCTTTCAACCATGTCCTT
TACATCACGCATCGGTGGGAATGGGGTGTCAACTGA
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