mRNA_H-paniculata_contig11903.1219.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11903.1219.1
Unique NamemRNA_H-paniculata_contig11903.1219.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.580e-29
Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    1 CGFLLENLCIEGGVEGCTLDLDGGYDVIMPEPLGGLSSNGYRVRIANVGGVFDTVRCSDDFYLMASQDSPTVGEKEGPSIKVLSPTSDSVAISGEEYTVE 300
            CGF L N+C EG   GC    D    V  PEPLGG S+ GYR+RIA VG   DT RCSDDFYLM+S D+P VGE  GP+I+V++PT+D++AI+GE YTVE
Sbjct:   75 CGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVE 172          
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 6.870e-28
Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 3
Query:  312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGGWVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530
            FDYDNGFG   GRFKIDLY  EG GDCG WV S+CDKP  GC DT G+YDIV+ +  + GMY+IRVGLFGDDS
Sbjct:  169 FDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDS 241          
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.400e-27
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 3
Query:  312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGGWVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530
            FDYDNGFG  +GRFKIDLY  EG GDCG WV S+CDKP  GC+D+ G+YD+V+    + GMY+IRVGLFGDDS
Sbjct:  172 FDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDS 244          
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 4.900e-22
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 3
Query:  312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGGWVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530
            FDYDNG G++V RF IDLY+  G+GDCG +V +ICDKP  GCKD+ G+YD+V+    + GMY IRVG+F DD 
Sbjct:  160 FDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDD 232          
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: D8LI53_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI53_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 8.870e-22
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGGWVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530
            FDYDNG G+ V RFKIDLY+I G GDCG WV ++CDK   GCKD+ G+YD+ +   V  GMY IRVG F DD+
Sbjct:   72 FDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPDTVVDGMYSIRVGRFEDDA 144          
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.870e-21
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 3
Query:  312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGGWVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530
            FDYDNG G+ V RFKIDLY+I G GDCG WV ++CDK   GCKD+ G+YD+ + + V  GMY IRVG F DD+
Sbjct:  113 FDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDA 185          
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.880e-20
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGGWVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530
            FD+DNGFG++V RF IDLY   G+GDCG +V SICDK   GCKD+ G+YD+V+    + GMY IRVG+F D  
Sbjct:  160 FDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPD 232          
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 7.510e-18
Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 CGFLLENLCIEGGVEGCTLDLDGGYDVIMPEPLGGLSSNGYRVRIANVGGVFDTVRCSDDFYLMASQDSPTVGEKEGPSIKVLSPTSDSVAISGEEYTVE 300
            CG  +  LC   G +GC  D +G YD++MPEP+ G S +GY+VR+ ++    D   CSD+FYL+AS ++P+VG+++GP+++V SP S  +A +  EYTVE
Sbjct:   67 CGDWVTALC-PYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDA-DCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVE 163          
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.060e-17
Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 CGFLLENLCIEGGVEGCTLDLDGGYDVIMPEPLGGLSSNGYRVRIANVGGVFDTVRCSDDFYLMASQDSPTVGEKEGPSIKVLSPTSDSVAISGEEYTVE 300
            CG  +  LC   G +GC  D +G YD++MPEP+ G S +GY+VR+ ++    D   CSD+FYL+AS ++P+VG+++GP+++V SP S  +A +  EYTVE
Sbjct:   66 CGDWVTALC-PYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVE 162          
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: D7G9C0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C0_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.860e-9
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 3
Query:  312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGG-WVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530
            FDY +   + VGRF I+LY   G G C G +V ++CDKP  GCKD+ G+YDI+M  V   G  +I +  F D +
Sbjct:  135 FDYFSEVDSRVGRFNIELYEDNGLGGCNGEFVSTLCDKPDIGCKDSQGDYDIIMADV-PTGECKIHISRFEDTA 207          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LEQ9_ECTSI1.580e-2959.00EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
D7FN59_ECTSI6.870e-2869.86EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KPZ5_9PHAE1.400e-2767.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G3E8_ECTSI4.900e-2258.90Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D8LI53_ECTSI8.870e-2260.27EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JEJ8_9PHAE2.870e-2160.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP11_9PHAE2.880e-2057.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH21_ECTSI7.510e-1845.00Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JRG9_9PHAE3.060e-1745.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9C0_ECTSI1.860e-944.59EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11903contigH-paniculata_contig11903:4557..5533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size531
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11903.1219.1prot_H-paniculata_contig11903.1219.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11903 5021..5449 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928905.3110516-UTR-H-paniculata_contig11903:4556..46401622928905.3110516-UTR-H-paniculata_contig11903:4556..4640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11903 4557..4640 -
1691480662.4855127-UTR-H-paniculata_contig11903:4556..46401691480662.4855127-UTR-H-paniculata_contig11903:4556..4640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11903 4557..4640 -
1622928907.0345411-UTR-H-paniculata_contig11903:4948..50201622928907.0345411-UTR-H-paniculata_contig11903:4948..5020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11903 4949..5020 -
1691480662.49399-UTR-H-paniculata_contig11903:4948..50201691480662.49399-UTR-H-paniculata_contig11903:4948..5020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11903 4949..5020 -
1622928907.2101407-UTR-H-paniculata_contig11903:5449..55331622928907.2101407-UTR-H-paniculata_contig11903:5449..5533Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11903 5450..5533 -
1691480662.5204124-UTR-H-paniculata_contig11903:5449..55331691480662.5204124-UTR-H-paniculata_contig11903:5449..5533Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11903 5450..5533 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928907.1800795-CDS-H-paniculata_contig11903:5020..50841622928907.1800795-CDS-H-paniculata_contig11903:5020..5084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11903 5021..5084 -
1691480662.5028126-CDS-H-paniculata_contig11903:5020..50841691480662.5028126-CDS-H-paniculata_contig11903:5020..5084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11903 5021..5084 -
1622928907.1973596-CDS-H-paniculata_contig11903:5222..54491622928907.1973596-CDS-H-paniculata_contig11903:5222..5449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11903 5223..5449 -
1691480662.5115628-CDS-H-paniculata_contig11903:5222..54491691480662.5115628-CDS-H-paniculata_contig11903:5222..5449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11903 5223..5449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11903.1219.1

>prot_H-paniculata_contig11903.1219.1 ID=prot_H-paniculata_contig11903.1219.1|Name=mRNA_H-paniculata_contig11903.1219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MPEPLGGLSSNGYRVRIANVGGVFDTVRCSDDFYLMASQDSPTVGEKEGP
SIKVLSPTSDSVAISGEEYTVEVSVYSTTTTGSATQWDGSRSICTR*
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mRNA from alignment at H-paniculata_contig11903:4557..5533-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11903.1219.1 ID=mRNA_H-paniculata_contig11903.1219.1|Name=mRNA_H-paniculata_contig11903.1219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=977bp|location=Sequence derived from alignment at H-paniculata_contig11903:4557..5533- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGGTTTCCTCCTAGAGAATTTGTGCATAGAGGGAGGGGTCGAGGGTTG TACTTTGGACCTGGACGGCGGCTACGATGTCATCATGCCGGAGCCGTTGG GAGGGTTATCGAGCAACGGCTACAGAGTGCGCATCGCCAACGTCGGAGGG GTTTTCGACACGGTTCGGTGCTCCGATGACTTTTACTTGATGGCATCACA AGACTCTCCAACGGTCGGTGAAAAAGAGGGTCCGTCGATCAAAGTGCTTT CTCCGACGTCAGATTCGGTGGCGATTTCTGGGGAGGAGTACACGGTGGAG GTGAGCGTTTAGTTGTAGTTCTCGATCGGTATTAGGTTTCAATTCACCTT AAAGCCTGCCGTTACTCACATCTTCTCGGTCTCGTTTTCTACGACGTTTG TGTCTTTTGATGTCACTGTCTCACGACCTGGTTGGGATGCATTGTCCAGT TCGACTACGACAACGGGTTCGGCAACACAGTGGGACGGTTCAAGATCGAT TTGTACACGATAGAGGGTGCCGGCGACTGTGGGGGCTGGGTTGGTTCCAT TTGCGACAAGCCGTACGCCGGCTGCAAAGATACCGGTGAGTAATACTAAT GAGAAATGCCATGGTAGTTGATGTTCTAACTTAGGCTGATTGTTACAAGT AGTTGGGATTGATGAAGATAAAGAGGTGATGTCGGGGGCAGCAATACTAC ATGACACCAAAATCTATCTGTGGCGCTGCATTGCATGTTCCTTAATTAGT GTTTTTGGGCTTCATTTTTTTGGTTGCTCCAAGCAGCCGTAGCGAACATC AACCGTTGACGAGATATTGCAAAAGTATGCGCTGACAAAGGTTGTTACCC CATGATTCATGATGTGCCTCCTTGCTCGCCGTGTTTGGAACAGCCGGAAA CTACGACATCGTAATGCTGCAAGTGGTGAAACCTGGCATGTACAGAATTC GCGTGGGCCTATTCGGTGATGATTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11903:4557..5533-

>mRNA_H-paniculata_contig11903.1219.1 ID=mRNA_H-paniculata_contig11903.1219.1|Name=mRNA_H-paniculata_contig11903.1219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig11903:4557..5533- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGGAGCCGTTGGGAGGGTTATCGAGCAACGGCTACAGAGTGCGCAT
CGCCAACGTCGGAGGGGTTTTCGACACGGTTCGGTGCTCCGATGACTTTT
ACTTGATGGCATCACAAGACTCTCCAACGGTCGGTGAAAAAGAGGGTCCG
TCGATCAAAGTGCTTTCTCCGACGTCAGATTCGGTGGCGATTTCTGGGGA
GGAGTACACGGTGGAGGTGAGCGTTTAATGCCGGAGCCGTTGGGAGGGTT
ATCGAGCAACGGCTACAGAGTGCGCATCGCCAACGTCGGAGGGGTTTTCG
ACACGGTTCGGTGCTCCGATGACTTTTACTTGATGGCATCACAAGACTCT
CCAACGGTCGGTGAAAAAGAGGGTCCGTCGATCAAAGTGCTTTCTCCGAC
GTCAGATTCGGTGGCGATTTCTGGGGAGGAGTACACGGTGGAGGTGAGCG
TTTATTCGACTACGACAACGGGTTCGGCAACACAGTGGGACGGTTCAAGA
TCGATTTGTACACGATAGTTCGACTACGACAACGGGTTCGGCAACACAGT
GGGACGGTTCAAGATCGATTTGTACACGATAG
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