mRNA_H-paniculata_contig11903.1219.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 119 bits (297), Expect = 1.580e-29 Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 1 Query: 1 CGFLLENLCIEGGVEGCTLDLDGGYDVIMPEPLGGLSSNGYRVRIANVGGVFDTVRCSDDFYLMASQDSPTVGEKEGPSIKVLSPTSDSVAISGEEYTVE 300 CGF L N+C EG GC D V PEPLGG S+ GYR+RIA VG DT RCSDDFYLM+S D+P VGE GP+I+V++PT+D++AI+GE YTVE Sbjct: 75 CGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVE 172
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 114 bits (284), Expect = 6.870e-28 Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 3 Query: 312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGGWVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530 FDYDNGFG GRFKIDLY EG GDCG WV S+CDKP GC DT G+YDIV+ + + GMY+IRVGLFGDDS Sbjct: 169 FDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDS 241
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.400e-27 Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 3 Query: 312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGGWVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530 FDYDNGFG +GRFKIDLY EG GDCG WV S+CDKP GC+D+ G+YD+V+ + GMY+IRVGLFGDDS Sbjct: 172 FDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDS 244
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 4.900e-22 Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 3 Query: 312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGGWVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530 FDYDNG G++V RF IDLY+ G+GDCG +V +ICDKP GCKD+ G+YD+V+ + GMY IRVG+F DD Sbjct: 160 FDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDD 232
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: D8LI53_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI53_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 8.870e-22 Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 3 Query: 312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGGWVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530 FDYDNG G+ V RFKIDLY+I G GDCG WV ++CDK GCKD+ G+YD+ + V GMY IRVG F DD+ Sbjct: 72 FDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPDTVVDGMYSIRVGRFEDDA 144
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 2.870e-21 Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 3 Query: 312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGGWVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530 FDYDNG G+ V RFKIDLY+I G GDCG WV ++CDK GCKD+ G+YD+ + + V GMY IRVG F DD+ Sbjct: 113 FDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDA 185
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 2.880e-20 Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 3 Query: 312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGGWVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530 FD+DNGFG++V RF IDLY G+GDCG +V SICDK GCKD+ G+YD+V+ + GMY IRVG+F D Sbjct: 160 FDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPD 232
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 7.510e-18 Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 1 Query: 1 CGFLLENLCIEGGVEGCTLDLDGGYDVIMPEPLGGLSSNGYRVRIANVGGVFDTVRCSDDFYLMASQDSPTVGEKEGPSIKVLSPTSDSVAISGEEYTVE 300 CG + LC G +GC D +G YD++MPEP+ G S +GY+VR+ ++ D CSD+FYL+AS ++P+VG+++GP+++V SP S +A + EYTVE Sbjct: 67 CGDWVTALC-PYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDA-DCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVE 163
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 3.060e-17 Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 1 Query: 1 CGFLLENLCIEGGVEGCTLDLDGGYDVIMPEPLGGLSSNGYRVRIANVGGVFDTVRCSDDFYLMASQDSPTVGEKEGPSIKVLSPTSDSVAISGEEYTVE 300 CG + LC G +GC D +G YD++MPEP+ G S +GY+VR+ ++ D CSD+FYL+AS ++P+VG+++GP+++V SP S +A + EYTVE Sbjct: 66 CGDWVTALC-PYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVE 162
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Match: D7G9C0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C0_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 1.860e-9 Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 3 Query: 312 FDYDNGFGNTVGRFKIDLYTIEGAGDCGG-WVGSICDKPYAGCKDTAGNYDIVMLQVVKPGMYRIRVGLFGDDS 530 FDY + + VGRF I+LY G G C G +V ++CDKP GCKD+ G+YDI+M V G +I + F D + Sbjct: 135 FDYFSEVDSRVGRFNIELYEDNGLGGCNGEFVSTLCDKPDIGCKDSQGDYDIIMADV-PTGECKIHISRFEDTA 207 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11903.1219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11903.1219.1 >prot_H-paniculata_contig11903.1219.1 ID=prot_H-paniculata_contig11903.1219.1|Name=mRNA_H-paniculata_contig11903.1219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp MPEPLGGLSSNGYRVRIANVGGVFDTVRCSDDFYLMASQDSPTVGEKEGPback to top mRNA from alignment at H-paniculata_contig11903:4557..5533- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11903.1219.1 ID=mRNA_H-paniculata_contig11903.1219.1|Name=mRNA_H-paniculata_contig11903.1219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=977bp|location=Sequence derived from alignment at H-paniculata_contig11903:4557..5533- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11903:4557..5533- >mRNA_H-paniculata_contig11903.1219.1 ID=mRNA_H-paniculata_contig11903.1219.1|Name=mRNA_H-paniculata_contig11903.1219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig11903:4557..5533- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |