mRNA_H-paniculata_contig49813.12188.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49813.12188.1
Unique NamemRNA_H-paniculata_contig49813.12188.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: D8LL81_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL81_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.050e-24
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   16 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLNN 153
            VEE CPKCGH KMEFYTMQLRSADEGQTVFYECLSK CKHKY++NN
Sbjct:   70 VEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115
[Close]
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A836CG05_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.940e-22
Identity = 37/46 (80.43%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:   16 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLNN 153
            V+E CPKCGH +MEFYTMQLRSADEGQTVFYECL+K+C+HK+S+NN
Sbjct:   70 VDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVNN 115
[Close]
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A0D2MM84_9CHLO (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MM84_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 1.210e-19
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   16 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLN 150
            V+E CP+CGHQ MEFYTMQLRSADEGQTVFYEC   DCKHKYS N
Sbjct:   38 VDEKCPQCGHQGMEFYTMQLRSADEGQTVFYEC--PDCKHKYSTN 80
[Close]
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A0H5RCQ6_9EUKA (DNA-directed RNA polymerase subunit n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RCQ6_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 7.490e-19
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   16 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLNN 153
            V+E CP CGH ++ FYTMQ+RSADEGQTVFYECL+  CKHKYSLNN
Sbjct:   80 VQEECPSCGHPELSFYTMQMRSADEGQTVFYECLN--CKHKYSLNN 123
[Close]
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.680e-19
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   16 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLN 150
            VEETCPKCGH +MEFYT+QLRSADEGQTVFYEC  K C H+YS+N
Sbjct:   81 VEETCPKCGHPEMEFYTLQLRSADEGQTVFYEC--KKCGHRYSVN 123
[Close]
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.110e-18
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   16 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLN 150
            VEETCPKCG+ +MEFYTMQLRSADEGQTVFYEC  K C H+YS+N
Sbjct:   81 VEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123
[Close]
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A6G0WT35_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.110e-18
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   16 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLN 150
            VEETCPKCG+ +MEFYTMQLRSADEGQTVFYEC  K C H+YS+N
Sbjct:   81 VEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123
[Close]
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN)

HSP 1 Score: 80.1 bits (196), Expect = 4.180e-18
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLNN 153
            VEETCPKCG+ +M++YTMQLRSADEGQTVFYEC  K C HK+S+NN
Sbjct:   79 VEETCPKCGNPEMDYYTMQLRSADEGQTVFYEC--KKCGHKFSVNN 122
[Close]
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A484EDY4_BRELC (DNA-directed RNA polymerase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDY4_BRELC)

HSP 1 Score: 80.1 bits (196), Expect = 4.520e-18
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLNN 153
            VEETCPKCG+++MEFYT+QLRSADEGQTVFYEC  K C HK S+NN
Sbjct:   82 VEETCPKCGNREMEFYTLQLRSADEGQTVFYEC--KKCGHKSSVNN 125
[Close]
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A0W8CTM2_PHYNI (DNA-directed RNA polymerase subunit n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CTM2_PHYNI)

HSP 1 Score: 79.0 bits (193), Expect = 7.080e-18
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLNN 153
            VEETCPKCG+ +M++YT+QLRSADEGQTVFYEC  K C HK+S+NN
Sbjct:   59 VEETCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL81_ECTSI2.050e-2489.13DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CG05_9STRA1.940e-2280.43DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A0D2MM84_9CHLO1.210e-1982.22DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]
A0A0H5RCQ6_9EUKA7.490e-1976.09DNA-directed RNA polymerase subunit n=1 Tax=Spongo... [more]
A0A024TQD9_9STRA7.680e-1980.00DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]
A0A485LF44_9STRA3.110e-1880.00DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A6G0WT35_9STRA3.110e-1880.00DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A2D4BKP7_PYTIN4.180e-1876.09DNA-directed RNA polymerase subunit n=2 Tax=Pythiu... [more]
A0A484EDY4_BRELC4.520e-1878.26DNA-directed RNA polymerase subunit n=1 Tax=Bremia... [more]
A0A0W8CTM2_PHYNI7.080e-1873.91DNA-directed RNA polymerase subunit n=1 Tax=Phytop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49813contigH-paniculata_contig49813:873..1028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue5.9e-18
Seed eggNOG ortholog2880.D8LL81
Preferred nameZNRD1
KEGG rclassRC02795
KEGG koko:K03000
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0000428,GO:0001085,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0045892,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0055029,GO:0060255,GO:0061629,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen
EggNOG OGsCOG1594@1,KOG2907@2759
Ec32 ortholog descriptionDNA-directed RNA polymerase, subunit C11/M/9
Ec32 orthologEc-24_002610.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Exons1
Model size156
Cds size156
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930466.7663574-CDS-H-paniculata_contig49813:872..10281622930466.7663574-CDS-H-paniculata_contig49813:872..1028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49813 873..1028 +
1691481304.4078307-CDS-H-paniculata_contig49813:872..10281691481304.4078307-CDS-H-paniculata_contig49813:872..1028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49813 873..1028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49813.12188.1prot_H-paniculata_contig49813.12188.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49813 873..1028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49813.12188.1

>prot_H-paniculata_contig49813.12188.1 ID=prot_H-paniculata_contig49813.12188.1|Name=mRNA_H-paniculata_contig49813.12188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MFVPQVEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLN
N*
back to top

mRNA from alignment at H-paniculata_contig49813:873..1028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49813.12188.1 ID=mRNA_H-paniculata_contig49813.12188.1|Name=mRNA_H-paniculata_contig49813.12188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig49813:873..1028+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGTTCCGCAGGTAGAGGAAACGTGTCCGAAATGTGGCCACCAGAA
AATGGAGTTCTACACCATGCAGCTACGGTCCGCTGATGAAGGGCAGACGG
TGTTTTACGAGTGTTTGTCGAAGGATTGCAAGCACAAGTACTCCCTCAAC
AACTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig49813:873..1028+

>mRNA_H-paniculata_contig49813.12188.1 ID=mRNA_H-paniculata_contig49813.12188.1|Name=mRNA_H-paniculata_contig49813.12188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig49813:873..1028+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGTTCCGCAGGTAGAGGAAACGTGTCCGAAATGTGGCCACCAGAA
AATGGAGTTCTACACCATGCAGCTACGGTCCGCTGATGAAGGGCAGACGG
TGTTTTACGAGTGTTTGTCGAAGGATTGCAAGCACAAGTACTCCCTCAAC
AACTAAATGTTCGTTCCGCAGGTAGAGGAAACGTGTCCGAAATGTGGCCA
CCAGAAAATGGAGTTCTACACCATGCAGCTACGGTCCGCTGATGAAGGGC
AGACGGTGTTTTACGAGTGTTTGTCGAAGGATTGCAAGCACAAGTACTCC
CTCAACAACTAA
back to top