prot_H-paniculata_contig49796.12182.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig49796.12182.1
Unique Nameprot_H-paniculata_contig49796.12182.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length195
Homology
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BLAST of mRNA_H-paniculata_contig49796.12182.1 vs. uniprot
Match: UPI000BBEE580 (uncharacterized protein LOC106448715 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEE580)

HSP 1 Score: 53.1 bits (126), Expect = 8.540e-5
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 0 
Query:  117 GMEIWICDNGATKHMTHDSYFLFNYQECDGHVRLANGNRLPIEGVGMLFLQFRVDSEVVLM 177
            G++  I D+GA+ HM  D   + N +   GHV +ANG+R+PI+GVG L L F  DS+ + M
Sbjct:  414 GIKPLIVDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIKGVGDLKL-FNKDSKALYM 473
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BLAST of mRNA_H-paniculata_contig49796.12182.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH)

HSP 1 Score: 53.1 bits (126), Expect = 8.990e-5
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 0 
Query:  102 VLSVDSEGLEYRKVGGMEIWICDNGATKHMTHDSYFLFNYQECDGHVRLANGNRLPIEGVGMLFLQFRVDSEVVLM 177
            ++S+   G+ +         + D+GA+ HM  +S  L N +   GHV +ANG+++PIEG+G L L F  DS+   M
Sbjct:  323 IVSLKESGITFSSQTSSSSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAFFM 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49796.12182.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000BBEE5808.540e-544.26uncharacterized protein LOC106448715 n=1 Tax=Brass... [more]
A0A178U605_ARATH8.990e-535.53ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 22..38
e-value: 0.0062
score: 24.8
coord: 40..56
e-value: 26.0
score: 2.5
NoneNo IPR availableGENE3D4.10.60.10coord: 11..57
e-value: 5.3E-7
score: 31.4
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 15..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49796contigH-paniculata_contig49796:555..1139 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49796.12182.1mRNA_H-paniculata_contig49796.12182.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig49796 555..1139 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig49796.12182.1 ID=prot_H-paniculata_contig49796.12182.1|Name=mRNA_H-paniculata_contig49796.12182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
PDRSSNSTKGGHSAGTKSKQPKCFICRSKDHFQRECPNVYCRRGGKRGHD
LYTCPQIADEDACLAEAETEVEFEEALEVDLGEDEFIAAYIVSTSTTGKE
EVLSVDSEGLEYRKVGGMEIWICDNGATKHMTHDSYFLFNYQECDGHVRL
ANGNRLPIEGVGMLFLQFRVDSEVVLMKLTQVAFIPLLSHHLLSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf