mRNA_H-paniculata_contig49796.12182.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49796.12182.1
Unique NamemRNA_H-paniculata_contig49796.12182.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig49796.12182.1 vs. uniprot
Match: UPI000BBEE580 (uncharacterized protein LOC106448715 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEE580)

HSP 1 Score: 53.1 bits (126), Expect = 8.540e-5
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  349 GMEIWICDNGATKHMTHDSYFLFNYQECDGHVRLANGNRLPIEGVGMLFLQFRVDSEVVLM 531
            G++  I D+GA+ HM  D   + N +   GHV +ANG+R+PI+GVG L L F  DS+ + M
Sbjct:  414 GIKPLIVDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIKGVGDLKL-FNKDSKALYM 473
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BLAST of mRNA_H-paniculata_contig49796.12182.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH)

HSP 1 Score: 53.1 bits (126), Expect = 8.990e-5
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:  304 VLSVDSEGLEYRKVGGMEIWICDNGATKHMTHDSYFLFNYQECDGHVRLANGNRLPIEGVGMLFLQFRVDSEVVLM 531
            ++S+   G+ +         + D+GA+ HM  +S  L N +   GHV +ANG+++PIEG+G L L F  DS+   M
Sbjct:  323 IVSLKESGITFSSQTSSSSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAFFM 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49796.12182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000BBEE5808.540e-544.26uncharacterized protein LOC106448715 n=1 Tax=Brass... [more]
A0A178U605_ARATH8.990e-535.53ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49796contigH-paniculata_contig49796:555..1139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size585
Cds size585
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930465.7658377-CDS-H-paniculata_contig49796:554..11391622930465.7658377-CDS-H-paniculata_contig49796:554..1139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49796 555..1139 -
1691481303.9940343-CDS-H-paniculata_contig49796:554..11391691481303.9940343-CDS-H-paniculata_contig49796:554..1139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49796 555..1139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49796.12182.1prot_H-paniculata_contig49796.12182.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49796 555..1139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49796.12182.1

>prot_H-paniculata_contig49796.12182.1 ID=prot_H-paniculata_contig49796.12182.1|Name=mRNA_H-paniculata_contig49796.12182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
PDRSSNSTKGGHSAGTKSKQPKCFICRSKDHFQRECPNVYCRRGGKRGHD
LYTCPQIADEDACLAEAETEVEFEEALEVDLGEDEFIAAYIVSTSTTGKE
EVLSVDSEGLEYRKVGGMEIWICDNGATKHMTHDSYFLFNYQECDGHVRL
ANGNRLPIEGVGMLFLQFRVDSEVVLMKLTQVAFIPLLSHHLLSL
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mRNA from alignment at H-paniculata_contig49796:555..1139-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49796.12182.1 ID=mRNA_H-paniculata_contig49796.12182.1|Name=mRNA_H-paniculata_contig49796.12182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=585bp|location=Sequence derived from alignment at H-paniculata_contig49796:555..1139- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGATCGTTCTAGCAACAGCACCAAGGGTGGCCATTCCGCTGGCACCAA
GAGCAAGCAGCCAAAGTGCTTCATCTGCCGCTCCAAGGATCACTTTCAAC
GGGAATGTCCCAACGTGTACTGTCGGCGAGGTGGTAAGCGTGGTCACGAC
TTGTACACGTGCCCCCAGATCGCCGATGAAGATGCTTGTTTGGCTGAAGC
TGAAACGGAGGTCGAATTTGAAGAGGCGCTCGAGGTTGACCTGGGCGAAG
ACGAGTTCATCGCGGCATACATCGTGTCGACTTCCACCACAGGCAAGGAA
GAGGTTTTATCTGTGGACTCTGAGGGGTTAGAATATCGTAAGGTGGGGGG
GATGGAAATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATG
ATTCATATTTTCTCTTTAATTACCAGGAATGTGATGGGCATGTACGCCTT
GCAAATGGTAATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCA
ATTTCGAGTTGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGT
TCATACCACTTCTCAGTCATCACCTTCTATCTCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig49796:555..1139-

>mRNA_H-paniculata_contig49796.12182.1 ID=mRNA_H-paniculata_contig49796.12182.1|Name=mRNA_H-paniculata_contig49796.12182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig49796:555..1139- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGATCGTTCTAGCAACAGCACCAAGGGTGGCCATTCCGCTGGCACCAA
GAGCAAGCAGCCAAAGTGCTTCATCTGCCGCTCCAAGGATCACTTTCAAC
GGGAATGTCCCAACGTGTACTGTCGGCGAGGTGGTAAGCGTGGTCACGAC
TTGTACACGTGCCCCCAGATCGCCGATGAAGATGCTTGTTTGGCTGAAGC
TGAAACGGAGGTCGAATTTGAAGAGGCGCTCGAGGTTGACCTGGGCGAAG
ACGAGTTCATCGCGGCATACATCGTGTCGACTTCCACCACAGGCAAGGAA
GAGGTTTTATCTGTGGACTCTGAGGGGTTAGAATATCGTAAGGTGGGGGG
GATGGAAATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATG
ATTCATATTTTCTCTTTAATTACCAGGAATGTGATGGGCATGTACGCCTT
GCAAATGGTAATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCA
ATTTCGAGTTGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGT
TCATACCACTTCTCAGTCATCACCTTCTATCTCTCCCCGATCGTTCTAGC
AACAGCACCAAGGGTGGCCATTCCGCTGGCACCAAGAGCAAGCAGCCAAA
GTGCTTCATCTGCCGCTCCAAGGATCACTTTCAACGGGAATGTCCCAACG
TGTACTGTCGGCGAGGTGGTAAGCGTGGTCACGACTTGTACACGTGCCCC
CAGATCGCCGATGAAGATGCTTGTTTGGCTGAAGCTGAAACGGAGGTCGA
ATTTGAAGAGGCGCTCGAGGTTGACCTGGGCGAAGACGAGTTCATCGCGG
CATACATCGTGTCGACTTCCACCACAGGCAAGGAAGAGGTTTTATCTGTG
GACTCTGAGGGGTTAGAATATCGTAAGGTGGGGGGGATGGAAATCTGGAT
TTGTGATAATGGTGCAACGAAACACATGACCCATGATTCATATTTTCTCT
TTAATTACCAGGAATGTGATGGGCATGTACGCCTTGCAAATGGTAATCGT
CTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGAGTTGACTC
CGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGTTCATACCACTTCTCA
GTCATCACCTTCTATCTCTC
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