mRNA_H-paniculata_contig4968.12160.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4968.12160.1
Unique NamemRNA_H-paniculata_contig4968.12160.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: D8LAY6_ECTSI (Nephroretinin 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY6_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 3.380e-117
Identity = 177/212 (83.49%), Postives = 197/212 (92.92%), Query Frame = 1
Query:   13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRIRG 648
            VY+DH+Q SLYE WH++VQARLRMD+HSLLGQQSPADL+VRGDRYSRKVRAFSS P+E+SFEP NAFQLVPG YNRV++ FRPLSTGS+KIH+HLVDVDSMEIVGAWLATATAMPPV+TKSYDV+LP+GRACHKRIAYSNPWN T+LFRL SSD  +LRPRYESLEVAGGGTG+LRLWFAA  G N R+EAFLFVNDSEGQNEECLLI +RG
Sbjct: 2829 VYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRKVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLSTGSRKIHVHLVDVDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWNTTRLFRLASSDPRILRPRYESLEVAGGGTGFLRLWFAAPGGTNVRKEAFLFVNDSEGQNEECLLICMRG 3040          
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A836CDE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE8_9STRA)

HSP 1 Score: 243 bits (620), Expect = 2.420e-78
Identity = 119/211 (56.40%), Postives = 151/211 (71.56%), Query Frame = 1
Query:   13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRIR 645
            +++D  +  LYE WH++V +RLR+D+H+ LGQ S A+LVVRGDRYSR+VR FSSAP +  F+P   FQLV G YNRV                H+VDVD+ E+VGAWLATATA+PPVVTK+ ++DLPVG+  HKRIAY+NPW+  + FRL SSD +V+ PR+  LE A GGTG++RLW  A   A +  E FLFVND   QNEECLLIR+R
Sbjct:   13 LHDDRDRTRLYEIWHVMVHSRLRLDVHATLGQASAANLVVRGDRYSRRVRCFSSAPGDCEFDPPTTFQLVSGAYNRV----------------HMVDVDTQELVGAWLATATALPPVVTKTNELDLPVGKESHKRIAYANPWSQARAFRLRSSDETVMAPRHGGLEAAAGGTGFIRLWLHAPDAAGSA-EVFLFVNDENDQNEECLLIRMR 206          
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A835YU49_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU49_9STRA)

HSP 1 Score: 248 bits (634), Expect = 3.550e-72
Identity = 123/234 (52.56%), Postives = 159/234 (67.95%), Query Frame = 1
Query:   13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLE----------------------VAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRIRG 648
            +Y+D  +  LYE WH++V +RLR+D+H+ LGQ S ADLVVRGDRYSR+VR F+SAP++  F+P + FQLV G YNRV + +RP  TG  KI +H+VDVD+ E+VGAWLATATA+PPVVTK+Y++DLPVG+  HKRIAY+NPW   + FRL SSD +V+ PR+  LE                      VA GGTG++RLW  A   A +  E FLFVND   QNEE  +  +R 
Sbjct: 3058 LYDDRDRTRLYEIWHVMVHSRLRLDVHATLGQASAADLVVRGDRYSRRVRCFTSAPADCEFDPPSTFQLVSGAYNRVDMRYRPTRTGGSKIQVHMVDVDTQELVGAWLATATALPPVVTKTYELDLPVGKESHKRIAYANPWLQARAFRLRSSDETVMAPRHGGLEXXXXXXXXXXXXXXXXXXXXXXVAAGGTGFIRLWLHAPDAAGSA-EVFLFVNDENDQNEEYNMDMLRN 3290          
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A7S2QW27_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QW27_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.670e-60
Identity = 93/210 (44.29%), Postives = 149/210 (70.95%), Query Frame = 1
Query:   13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRI 642
            VY+DH+Q  ++E WH+VVQ+RLR+D+++ +GQ +P++LV++GD+++R+V  +SS+P+E  F+P   FQLVPG +NR  V FR    GSKKIH+H+VD+D+ E+V AWL T  +  PV+TK YDV +P+G  C K+++++N W+ T+ ++L SSD +V++PR  ++++     GY+RL+F          E  LFVND +  NEE  L+++
Sbjct: 2261 VYDDHYQGVVHECWHVVVQSRLRLDVNAAVGQSTPSELVIQGDKFARRVMVYSSSPAETFFDPSRPFQLVPGAFNRAAVKFRMKQAGSKKIHIHMVDLDTKELVCAWLVTVNSALPVITKVYDVQVPIGVGCSKKLSFTNQWDRTRRYKLMSSDPAVMKPRNPTVDIEPRAIGYMRLYFNP-IDVVGTEEVILFVNDEQDMNEEAFLLKV 2469          
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A7S2HFZ8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HFZ8_9STRA)

HSP 1 Score: 199 bits (506), Expect = 7.230e-60
Identity = 93/213 (43.66%), Postives = 137/213 (64.32%), Query Frame = 1
Query:   13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLST-GSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRIRG 648
            +Y+D + A L E WH+ V +RLR DI + LGQ SP +LVVRGD Y R+V+A+SS P EI F P + F L P  YN++++ + P  T G +++H+HLVD+ + E+V AW+ T  A PP +TK Y VD+ VG   HK++++ NPW+  +LFRL S+D +V+RP+ + LE+      +++L+ +         E +L VND E QNEEC  I I  
Sbjct:   85 IYDDRYSARLNEIWHVTVASRLRKDIQATLGQASPMELVVRGDGYRRRVKAYSSEPREIKFLPADVFHLAPQQYNKLELRWTPFGTDGMRRVHVHLVDIQTGELVCAWIVTTVATPPAITKDYQVDVAVGEGSHKKVSFDNPWSRHRLFRLRSTDPNVMRPKTDELEIPPRDRAFIKLYISPFLRPGFA-EVYLLVNDEEDQNEECFRIVINA 296          
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A7S1XUC6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUC6_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.600e-59
Identity = 107/216 (49.54%), Postives = 144/216 (66.67%), Query Frame = 1
Query:   13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRP--LSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHA-GANARREAFLFVNDSEGQNEECLLIRIRGV 651
            VY D +QA L E WH+ V ARLR+D+H+  GQ   ADLVVRGD ++R+VRA+SS P E+SF+    F LV G YNR+ + +RP  LS+ +K+I +HL+D D+ ++V  W+ATAT   PVVT+++DVD+ V     KRI YSNPW+  + F+L SS+  ++RPR   LEV    +GY+RL     A  A A  E  LFVND E   EEC L+R+RGV
Sbjct: 1342 VYRDPYQAQLRELWHVHVNARLRLDLHATAGQAVTADLVVRGDSFTRRVRAYSSLPKEVSFDQAGEFALVAGSYNRIGLRYRPTGLSSVTKRISVHLIDADTQQLVCGWIATATTAAPVVTRTFDVDVTVDDEASKRIPYSNPWSRRRAFKLISSNPGLVRPRSARLEVEARASGYIRLALNGDAIDAGAVEEVLLFVNDDEDNTEECFLLRLRGV 1557          
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A067CRA1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CRA1_SAPPC)

HSP 1 Score: 200 bits (509), Expect = 2.150e-55
Identity = 92/210 (43.81%), Postives = 140/210 (66.67%), Query Frame = 1
Query:   13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRI 642
            +Y+D + A L+E W I +Q+ +R+D+H+ +GQ    +L+++GD   R+V  FSS P+E+ F P   FQL+P  +NR++V F  +   +K+I +H+VDVDS ++VGAWL   T   PVVTK +DV LP G    K+I+Y NPW+  + F L S+D+S+++PR   L++ G G GYLRL FA H+     ++ +LF+ND + QNEECLL  +
Sbjct: 3252 LYDDMYHARLHEIWRIQIQSMMRLDLHATMGQGVQNELIIKGDAMPRRVSCFSSHPNELQFNPSGIFQLIPHAFNRIEVRFATMQVCAKQIVVHVVDVDSRDLVGAWLLNTTVSEPVVTKVFDVTLPTGVPVLKKISYRNPWDEDRNFVLRSNDASIMKPREPRLQLRGNGDGYLRLAFAPHS-LPCSKKVYLFINDHQDQNEECLLFHL 3460          
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: T0RSH2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RSH2_SAPDV)

HSP 1 Score: 200 bits (508), Expect = 2.940e-55
Identity = 92/210 (43.81%), Postives = 140/210 (66.67%), Query Frame = 1
Query:   13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRI 642
            +Y+D + A L+E W I +Q+ +R+D+H+ +GQ    +L+V+GD   R+V  FSS P+E+ F+P   FQL+P  +NR++V F  +   +K+I +H+VDVDS ++VGAWL   T   P+VTK +DV LP G    K+I+Y NPW+  + F L S+D S+++PR   L++ G G GYLRL FA H+     ++ +LF+ND + QNEECLL  +
Sbjct: 3407 LYDDMYHARLHEIWRIHIQSMMRLDLHATMGQGVQNELIVKGDAMPRRVSCFSSHPTELQFKPSGIFQLIPHAFNRIEVRFATMQVCAKQIVVHVVDVDSRDLVGAWLLNTTVSEPIVTKVFDVTLPTGVPVLKKISYRNPWDEDRSFVLRSNDPSIMKPREPRLQLQGNGDGYLRLAFAPHS-LPCSKKVYLFINDHQDQNEECLLFHL 3615          
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A6G0XXV1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXV1_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.370e-54
Identity = 96/210 (45.71%), Postives = 140/210 (66.67%), Query Frame = 1
Query:   13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRI 642
            +Y D + A L+E W I VQA LR+D+ + +GQ    +L+++GD   R+VR +SS P E+ F P   FQL+P  +NR+++LF  +    K+I ++LVDVDS E+VG+WL   T   PVVTK +DV LP+G    K+I+Y NPW+  +LF L SSD S+++PR   L + G G G+LRL FA H+ A +++  +LF+ND   QNEECLL+ +
Sbjct: 3075 LYEDMYHARLFEIWRICVQAMLRLDLQASMGQGVRNELIIKGDTMPRRVRCYSSQPHEVQFNPDRIFQLLPHAFNRIELLFCSMEIRIKQIVVNLVDVDSYELVGSWLLNTTTTEPVVTKVFDVTLPLGVPVLKKISYRNPWDDDRLFILRSSDPSIMKPRERKLLLPGYGDGFLRLAFAPHSIACSKK-VYLFINDGSDQNEECLLLHV 3283          
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: W4H6W9_9STRA (Uncharacterized protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H6W9_9STRA)

HSP 1 Score: 196 bits (498), Expect = 6.450e-54
Identity = 87/210 (41.43%), Postives = 144/210 (68.57%), Query Frame = 1
Query:   13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRI 642
            +Y D + A LYE W + VQ+ LR+D+H+ +GQ    +L+++GD   R+VR +SS P+++ F P+  FQL+P  +NR+++L+  +  G+ ++ +++VDVDS E++G+WL  A    P+VTK +DV LP+G    K+I+Y NPW + ++F L +SD S+++PR  +L ++GG  G+LRL FA ++     ++ +LF+ND   QNEECLL+ I
Sbjct: 3398 LYEDMYHAVLYEIWRLCVQSMLRLDLHATMGQGVRNELILKGDTMPRRVRCYSSQPAKVHFNPERIFQLLPHAFNRIELLYCSMDVGALQVLINVVDVDSHELIGSWLLNANTSEPLVTKVFDVTLPLGVPVLKKISYRNPWESDRMFVLRTSDPSIMKPREPTLRLSGGSDGFLRLAFAPYS-IPCTKKVYLFINDGSDQNEECLLLHI 3606          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAY6_ECTSI3.380e-11783.49Nephroretinin 4 n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A836CDE8_9STRA2.420e-7856.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YU49_9STRA3.550e-7252.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2QW27_9STRA1.670e-6044.29Hypothetical protein n=2 Tax=Triparma pacifica Tax... [more]
A0A7S2HFZ8_9STRA7.230e-6043.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XUC6_9STRA2.600e-5949.54Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A067CRA1_SAPPC2.150e-5543.81Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0RSH2_SAPDV2.940e-5543.81Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A6G0XXV1_9STRA1.370e-5445.71Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
W4H6W9_9STRA6.450e-5441.43Uncharacterized protein n=11 Tax=Aphanomyces astac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4968contigH-paniculata_contig4968:479..2546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.8
Seed ortholog evalue3.3e-90
Seed eggNOG ortholog2880.D8LAY6
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005432,GO:0005488,GO:0005509,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006816,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015081,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015318,GO:0015368,GO:0015491,GO:0015672,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0035725,GO:0042592,GO:0043167,GO:0043169,GO:0046872,GO:0046873,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0072507,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099516
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons3
Model size691
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4968.12160.1prot_H-paniculata_contig4968.12160.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4968 516..2465 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930462.690856-UTR-H-paniculata_contig4968:478..5151622930462.690856-UTR-H-paniculata_contig4968:478..515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4968 479..515 -
1691481302.7350101-UTR-H-paniculata_contig4968:478..5151691481302.7350101-UTR-H-paniculata_contig4968:478..515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4968 479..515 -
1622930462.7584307-UTR-H-paniculata_contig4968:2465..25461622930462.7584307-UTR-H-paniculata_contig4968:2465..2546Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4968 2466..2546 -
1691481302.7754846-UTR-H-paniculata_contig4968:2465..25461691481302.7754846-UTR-H-paniculata_contig4968:2465..2546Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4968 2466..2546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930462.7111778-CDS-H-paniculata_contig4968:515..6591622930462.7111778-CDS-H-paniculata_contig4968:515..659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4968 516..659 -
1691481302.7501476-CDS-H-paniculata_contig4968:515..6591691481302.7501476-CDS-H-paniculata_contig4968:515..659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4968 516..659 -
1622930462.7274423-CDS-H-paniculata_contig4968:1712..19831622930462.7274423-CDS-H-paniculata_contig4968:1712..1983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4968 1713..1983 -
1691481302.7590778-CDS-H-paniculata_contig4968:1712..19831691481302.7590778-CDS-H-paniculata_contig4968:1712..1983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4968 1713..1983 -
1622930462.7432008-CDS-H-paniculata_contig4968:2307..24651622930462.7432008-CDS-H-paniculata_contig4968:2307..2465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4968 2308..2465 -
1691481302.7672563-CDS-H-paniculata_contig4968:2307..24651691481302.7672563-CDS-H-paniculata_contig4968:2307..2465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4968 2308..2465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4968.12160.1

>prot_H-paniculata_contig4968.12160.1 ID=prot_H-paniculata_contig4968.12160.1|Name=mRNA_H-paniculata_contig4968.12160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGG
YNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYD
VDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTG
YLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRIRGV*
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mRNA from alignment at H-paniculata_contig4968:479..2546-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4968.12160.1 ID=mRNA_H-paniculata_contig4968.12160.1|Name=mRNA_H-paniculata_contig4968.12160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2068bp|location=Sequence derived from alignment at H-paniculata_contig4968:479..2546- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCTTTCACAGGTATACAACGATCATTTTCAAGCTTCATTGTACGAAGC CTGGCACATAGTAGTGCAGGCCCGTCTTCGCATGGATATACACTCCCTGC TTGGCCAACAAAGCCCAGCCGATCTGGTAGTGCGTGGAGATCGGTATAGC CGAAAGGTCAGGGCTTTCTCGTCGGCTCCTTCGGAGATCTCATTCGAACC CCAAAACGCGTTCCAGCTAGTGCCGGGAGGGTACAACAGGTGCGATAAAA CGAAAACCAGCGTGCCCATTTGAACAAGTTGAAGAGTTGTTCCGAAAATA TTTAGTTTTTAACACCAGAATGTATTCCAATGGTCTGATTAGATAGCACG AGTAGTTGATGTACAACTGCCGCCACGGCCTTGTGTTCTCGTACTGTATG GCTTGAATTTGAAATTCATGACATCCTAGTCGTGTTGGGATCCCCCTAGC AGGTGCTTGTGGCATTGATGTAGCTCCATCGAACCGGAGGACGAAAGTTC ACGCCATTAACTCCAACCTTCATTTGTTTCCAACATTCCACTCGATCTTC GTGCCTTATACAGGGTGCAGGTGCTCTTTCGTCCGCTTTCTACTGGCAGC AAGAAGATCCACCTTCATCTGGTGGATGTAGATTCTATGGAGATAGTTGG TGCCTGGCTCGCTACCGCAACAGCGATGCCCCCGGTGGTCACGAAGTCCT ATGACGTCGATCTGCCTGTCGGCCGCGCATGTCACAAGCGTATCGCGTAT TCGAACCCGTGGAATGCAACGAAATTGTTTCGATTGCATTCCAGTGACAG CTCCGTTCTTCGTCCGCGCTACGAAAGCCTCGAGGTATGGTGCGTGGACC GGTCACTACTAGCGAGCAGTTGGGGTGGAAATAGTGGAAATTTGGTGTGG AACATGAACAGAACCGATATCCCCGATTAACAAATTCCCCCCAAGTGGTC GATTCTGTTACCCAAGATTTTGTTTGACCCCATTTTCAATTCTGAGCTAT GGTTTTTATTCTCTCTTCACGTTCCACCCCAGATTCCCACATTTCAGATT TCATCATTTCCGCCCAAAGCATGCTCGCTACTATTAATAAGAACATATTG CCATGCTTGGAACGGATGCGTGATGGAAATAGCTCAGCATAGCTGTCAGA GAATTTGTCATAGTAAGTAGCCTGTACATGAACTGTATAGTCTTGCAGTT ACGGATAAGTGGTGATCGTATGCCCCGTTAGGGAGTGCGCTTGTGCACAC AGGAGATATTTTGATATCTTTTCAAGAGCGGCATTCCTACCAGGCGCGTT TTCGGCCAAAAAACGGAGATTTGTCAGCTGGGGAATTTCGGGTGCTCAAA TAAGAGGCAAATTTGCGAAAAATATGAAAATTTCCATATTTGTAGAAACA GTTGATGAAAATAATGGTTGACAGTTTTGTTGAATAAATTCTCGCTCTTT CATGTGAAAGATCGAAAATCTTGAAGTTGACAAATTTCCGTACATTCGCC AAAAACGCACCTGCTAGGAATGACCCTTCAAAAGAAAGAAAGAAGCGAAA CGGTGGCCCAAGCCACCCAGTTACTGGATATATCTCACATCACATGTTAC CATCGGGGTAAAACCCAATGTAATGTTCCTACAATATTCTCTCAACTGCA CAAACTGTCGGTACGGTGACATTGCATCGAAAGAATATTTTTCTCCCACA ATGTAGAGGTCTGCTTGACATCATGTACACCCGTCGCTCGCAGCACGAGA AGGTGTGAAGTCATCCAAAAATGACATGAACCCGTGGGATGTACAGAAAT CGATATTGCAATGGCGATAGAGTTGGTTTTGGGTAATATTTAATTCATCT CTCTAAGATATCAGTCTATTTGTGCTTATAATTTCAGGTTGCCGGCGGCG GGACGGGGTACCTCCGGTTGTGGTTTGCGGCACATGCGGGTGCTAACGCG AGGAGGGAGGCGTTCTTGTTCGTGAATGACAGCGAAGGACAAAACGAGGA GTGTTTATTGATTCGCATAAGAGGAGTATAGAAATTGCCATGTGATGAGC GACAAGCTTCAAAAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4968:479..2546-

>mRNA_H-paniculata_contig4968.12160.1 ID=mRNA_H-paniculata_contig4968.12160.1|Name=mRNA_H-paniculata_contig4968.12160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig4968:479..2546- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATATACACTCCCTGCTTGGCCAACAAAGCCCAGCCGATCTGGTAGT
GCGTGGAGATCGGTATAGCCGAAAGGTCAGGGCTTTCTCGTCGGCTCCTT
CGGAGATCTCATTCGAACCCCAAAACGCGTTCCAGCTAGTGCCGGGAGGG
TACAACAGATGGATATACACTCCCTGCTTGGCCAACAAAGCCCAGCCGAT
CTGGTAGTGCGTGGAGATCGGTATAGCCGAAAGGTCAGGGCTTTCTCGTC
GGCTCCTTCGGAGATCTCATTCGAACCCCAAAACGCGTTCCAGCTAGTGC
CGGGAGGGTACAACAGGGTGCAGGTGCTCTTTCGTCCGCTTTCTACTGGC
AGCAAGAAGATCCACCTTCATCTGGTGGATGTAGATTCTATGGAGATAGT
TGGTGCCTGGCTCGCTACCGCAACAGCGATGCCCCCGGTGGTCACGAAGT
CCTATGACGTCGATCTGCCTGTCGGCCGCGCATGTCACAAGCGTATCGCG
TATTCGAACCCGTGGAATGCAACGAAATTGTTTCGATTGCATTCCAGTGA
CAGCTCCGTTCTTCGTCCGCGCTACGAAAGCCTCGAGGGTGCAGGTGCTC
TTTCGTCCGCTTTCTACTGGCAGCAAGAAGATCCACCTTCATCTGGTGGA
TGTAGATTCTATGGAGATAGTTGGTGCCTGGCTCGCTACCGCAACAGCGA
TGCCCCCGGTGGTCACGAAGTCCTATGACGTCGATCTGCCTGTCGGCCGC
GCATGTCACAAGCGTATCGCGTATTCGAACCCGTGGAATGCAACGAAATT
GTTTCGATTGCATTCCAGTGACAGCTCCGTTCTTCGTCCGCGCTACGAAA
GCCTCGAGGTTGCCGGCGGCGGGACGGGGTACCTCCGGTTGTGGTTTGCG
GCACATGCGGGTGCTAACGCGAGGAGGGAGGCGTTCTTGTTCGTGAATGA
CAGCGAAGGACAAAACGAGGAGTGTTTATTGATTCGCATAAGAGGAGTAT
AGGTTGCCGGCGGCGGGACGGGGTACCTCCGGTTGTGGTTTGCGGCACAT
GCGGGTGCTAACGCGAGGAGGGAGGCGTTCTTGTTCGTGAATGACAGCGA
AGGACAAAACGAGGAGTGTTTATTGATTCGCATAAGAGGAGTATAG
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