mRNA_H-paniculata_contig4968.12160.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: D8LAY6_ECTSI (Nephroretinin 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY6_ECTSI) HSP 1 Score: 377 bits (969), Expect = 3.380e-117 Identity = 177/212 (83.49%), Postives = 197/212 (92.92%), Query Frame = 1
Query: 13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRIRG 648
VY+DH+Q SLYE WH++VQARLRMD+HSLLGQQSPADL+VRGDRYSRKVRAFSS P+E+SFEP NAFQLVPG YNRV++ FRPLSTGS+KIH+HLVDVDSMEIVGAWLATATAMPPV+TKSYDV+LP+GRACHKRIAYSNPWN T+LFRL SSD +LRPRYESLEVAGGGTG+LRLWFAA G N R+EAFLFVNDSEGQNEECLLI +RG
Sbjct: 2829 VYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRKVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLSTGSRKIHVHLVDVDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWNTTRLFRLASSDPRILRPRYESLEVAGGGTGFLRLWFAAPGGTNVRKEAFLFVNDSEGQNEECLLICMRG 3040
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A836CDE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE8_9STRA) HSP 1 Score: 243 bits (620), Expect = 2.420e-78 Identity = 119/211 (56.40%), Postives = 151/211 (71.56%), Query Frame = 1
Query: 13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRIR 645
+++D + LYE WH++V +RLR+D+H+ LGQ S A+LVVRGDRYSR+VR FSSAP + F+P FQLV G YNRV H+VDVD+ E+VGAWLATATA+PPVVTK+ ++DLPVG+ HKRIAY+NPW+ + FRL SSD +V+ PR+ LE A GGTG++RLW A A + E FLFVND QNEECLLIR+R
Sbjct: 13 LHDDRDRTRLYEIWHVMVHSRLRLDVHATLGQASAANLVVRGDRYSRRVRCFSSAPGDCEFDPPTTFQLVSGAYNRV----------------HMVDVDTQELVGAWLATATALPPVVTKTNELDLPVGKESHKRIAYANPWSQARAFRLRSSDETVMAPRHGGLEAAAGGTGFIRLWLHAPDAAGSA-EVFLFVNDENDQNEECLLIRMR 206
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A835YU49_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU49_9STRA) HSP 1 Score: 248 bits (634), Expect = 3.550e-72 Identity = 123/234 (52.56%), Postives = 159/234 (67.95%), Query Frame = 1
Query: 13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLE----------------------VAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRIRG 648
+Y+D + LYE WH++V +RLR+D+H+ LGQ S ADLVVRGDRYSR+VR F+SAP++ F+P + FQLV G YNRV + +RP TG KI +H+VDVD+ E+VGAWLATATA+PPVVTK+Y++DLPVG+ HKRIAY+NPW + FRL SSD +V+ PR+ LE VA GGTG++RLW A A + E FLFVND QNEE + +R
Sbjct: 3058 LYDDRDRTRLYEIWHVMVHSRLRLDVHATLGQASAADLVVRGDRYSRRVRCFTSAPADCEFDPPSTFQLVSGAYNRVDMRYRPTRTGGSKIQVHMVDVDTQELVGAWLATATALPPVVTKTYELDLPVGKESHKRIAYANPWLQARAFRLRSSDETVMAPRHGGLEXXXXXXXXXXXXXXXXXXXXXXVAAGGTGFIRLWLHAPDAAGSA-EVFLFVNDENDQNEEYNMDMLRN 3290
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A7S2QW27_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QW27_9STRA) HSP 1 Score: 215 bits (547), Expect = 1.670e-60 Identity = 93/210 (44.29%), Postives = 149/210 (70.95%), Query Frame = 1
Query: 13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRI 642
VY+DH+Q ++E WH+VVQ+RLR+D+++ +GQ +P++LV++GD+++R+V +SS+P+E F+P FQLVPG +NR V FR GSKKIH+H+VD+D+ E+V AWL T + PV+TK YDV +P+G C K+++++N W+ T+ ++L SSD +V++PR ++++ GY+RL+F E LFVND + NEE L+++
Sbjct: 2261 VYDDHYQGVVHECWHVVVQSRLRLDVNAAVGQSTPSELVIQGDKFARRVMVYSSSPAETFFDPSRPFQLVPGAFNRAAVKFRMKQAGSKKIHIHMVDLDTKELVCAWLVTVNSALPVITKVYDVQVPIGVGCSKKLSFTNQWDRTRRYKLMSSDPAVMKPRNPTVDIEPRAIGYMRLYFNP-IDVVGTEEVILFVNDEQDMNEEAFLLKV 2469
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A7S2HFZ8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HFZ8_9STRA) HSP 1 Score: 199 bits (506), Expect = 7.230e-60 Identity = 93/213 (43.66%), Postives = 137/213 (64.32%), Query Frame = 1
Query: 13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLST-GSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRIRG 648
+Y+D + A L E WH+ V +RLR DI + LGQ SP +LVVRGD Y R+V+A+SS P EI F P + F L P YN++++ + P T G +++H+HLVD+ + E+V AW+ T A PP +TK Y VD+ VG HK++++ NPW+ +LFRL S+D +V+RP+ + LE+ +++L+ + E +L VND E QNEEC I I
Sbjct: 85 IYDDRYSARLNEIWHVTVASRLRKDIQATLGQASPMELVVRGDGYRRRVKAYSSEPREIKFLPADVFHLAPQQYNKLELRWTPFGTDGMRRVHVHLVDIQTGELVCAWIVTTVATPPAITKDYQVDVAVGEGSHKKVSFDNPWSRHRLFRLRSTDPNVMRPKTDELEIPPRDRAFIKLYISPFLRPGFA-EVYLLVNDEEDQNEECFRIVINA 296
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A7S1XUC6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUC6_9STRA) HSP 1 Score: 211 bits (538), Expect = 2.600e-59 Identity = 107/216 (49.54%), Postives = 144/216 (66.67%), Query Frame = 1
Query: 13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRP--LSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHA-GANARREAFLFVNDSEGQNEECLLIRIRGV 651
VY D +QA L E WH+ V ARLR+D+H+ GQ ADLVVRGD ++R+VRA+SS P E+SF+ F LV G YNR+ + +RP LS+ +K+I +HL+D D+ ++V W+ATAT PVVT+++DVD+ V KRI YSNPW+ + F+L SS+ ++RPR LEV +GY+RL A A A E LFVND E EEC L+R+RGV
Sbjct: 1342 VYRDPYQAQLRELWHVHVNARLRLDLHATAGQAVTADLVVRGDSFTRRVRAYSSLPKEVSFDQAGEFALVAGSYNRIGLRYRPTGLSSVTKRISVHLIDADTQQLVCGWIATATTAAPVVTRTFDVDVTVDDEASKRIPYSNPWSRRRAFKLISSNPGLVRPRSARLEVEARASGYIRLALNGDAIDAGAVEEVLLFVNDDEDNTEECFLLRLRGV 1557
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A067CRA1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CRA1_SAPPC) HSP 1 Score: 200 bits (509), Expect = 2.150e-55 Identity = 92/210 (43.81%), Postives = 140/210 (66.67%), Query Frame = 1
Query: 13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRI 642
+Y+D + A L+E W I +Q+ +R+D+H+ +GQ +L+++GD R+V FSS P+E+ F P FQL+P +NR++V F + +K+I +H+VDVDS ++VGAWL T PVVTK +DV LP G K+I+Y NPW+ + F L S+D+S+++PR L++ G G GYLRL FA H+ ++ +LF+ND + QNEECLL +
Sbjct: 3252 LYDDMYHARLHEIWRIQIQSMMRLDLHATMGQGVQNELIIKGDAMPRRVSCFSSHPNELQFNPSGIFQLIPHAFNRIEVRFATMQVCAKQIVVHVVDVDSRDLVGAWLLNTTVSEPVVTKVFDVTLPTGVPVLKKISYRNPWDEDRNFVLRSNDASIMKPREPRLQLRGNGDGYLRLAFAPHS-LPCSKKVYLFINDHQDQNEECLLFHL 3460
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: T0RSH2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RSH2_SAPDV) HSP 1 Score: 200 bits (508), Expect = 2.940e-55 Identity = 92/210 (43.81%), Postives = 140/210 (66.67%), Query Frame = 1
Query: 13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRI 642
+Y+D + A L+E W I +Q+ +R+D+H+ +GQ +L+V+GD R+V FSS P+E+ F+P FQL+P +NR++V F + +K+I +H+VDVDS ++VGAWL T P+VTK +DV LP G K+I+Y NPW+ + F L S+D S+++PR L++ G G GYLRL FA H+ ++ +LF+ND + QNEECLL +
Sbjct: 3407 LYDDMYHARLHEIWRIHIQSMMRLDLHATMGQGVQNELIVKGDAMPRRVSCFSSHPTELQFKPSGIFQLIPHAFNRIEVRFATMQVCAKQIVVHVVDVDSRDLVGAWLLNTTVSEPIVTKVFDVTLPTGVPVLKKISYRNPWDEDRSFVLRSNDPSIMKPREPRLQLQGNGDGYLRLAFAPHS-LPCSKKVYLFINDHQDQNEECLLFHL 3615
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: A0A6G0XXV1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXV1_9STRA) HSP 1 Score: 198 bits (503), Expect = 1.370e-54 Identity = 96/210 (45.71%), Postives = 140/210 (66.67%), Query Frame = 1
Query: 13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRI 642
+Y D + A L+E W I VQA LR+D+ + +GQ +L+++GD R+VR +SS P E+ F P FQL+P +NR+++LF + K+I ++LVDVDS E+VG+WL T PVVTK +DV LP+G K+I+Y NPW+ +LF L SSD S+++PR L + G G G+LRL FA H+ A +++ +LF+ND QNEECLL+ +
Sbjct: 3075 LYEDMYHARLFEIWRICVQAMLRLDLQASMGQGVRNELIIKGDTMPRRVRCYSSQPHEVQFNPDRIFQLLPHAFNRIELLFCSMEIRIKQIVVNLVDVDSYELVGSWLLNTTTTEPVVTKVFDVTLPLGVPVLKKISYRNPWDDDRLFILRSSDPSIMKPRERKLLLPGYGDGFLRLAFAPHSIACSKK-VYLFINDGSDQNEECLLLHV 3283
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Match: W4H6W9_9STRA (Uncharacterized protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H6W9_9STRA) HSP 1 Score: 196 bits (498), Expect = 6.450e-54 Identity = 87/210 (41.43%), Postives = 144/210 (68.57%), Query Frame = 1
Query: 13 VYNDHFQASLYEAWHIVVQARLRMDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGYNRVQVLFRPLSTGSKKIHLHLVDVDSMEIVGAWLATATAMPPVVTKSYDVDLPVGRACHKRIAYSNPWNATKLFRLHSSDSSVLRPRYESLEVAGGGTGYLRLWFAAHAGANARREAFLFVNDSEGQNEECLLIRI 642
+Y D + A LYE W + VQ+ LR+D+H+ +GQ +L+++GD R+VR +SS P+++ F P+ FQL+P +NR+++L+ + G+ ++ +++VDVDS E++G+WL A P+VTK +DV LP+G K+I+Y NPW + ++F L +SD S+++PR +L ++GG G+LRL FA ++ ++ +LF+ND QNEECLL+ I
Sbjct: 3398 LYEDMYHAVLYEIWRLCVQSMLRLDLHATMGQGVRNELILKGDTMPRRVRCYSSQPAKVHFNPERIFQLLPHAFNRIELLYCSMDVGALQVLINVVDVDSHELIGSWLLNANTSEPLVTKVFDVTLPLGVPVLKKISYRNPWESDRMFVLRTSDPSIMKPREPTLRLSGGSDGFLRLAFAPYS-IPCTKKVYLFINDGSDQNEECLLLHI 3606 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4968.12160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4968.12160.1 >prot_H-paniculata_contig4968.12160.1 ID=prot_H-paniculata_contig4968.12160.1|Name=mRNA_H-paniculata_contig4968.12160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp MDIHSLLGQQSPADLVVRGDRYSRKVRAFSSAPSEISFEPQNAFQLVPGGback to top mRNA from alignment at H-paniculata_contig4968:479..2546- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4968.12160.1 ID=mRNA_H-paniculata_contig4968.12160.1|Name=mRNA_H-paniculata_contig4968.12160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2068bp|location=Sequence derived from alignment at H-paniculata_contig4968:479..2546- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4968:479..2546- >mRNA_H-paniculata_contig4968.12160.1 ID=mRNA_H-paniculata_contig4968.12160.1|Name=mRNA_H-paniculata_contig4968.12160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig4968:479..2546- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |