mRNA_H-paniculata_contig4961.12154.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4961.12154.1
Unique NamemRNA_H-paniculata_contig4961.12154.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 204 bits (520), Expect = 2.300e-56
Identity = 102/252 (40.48%), Postives = 151/252 (59.92%), Query Frame = 1
Query:   10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVDE-SFEGRRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDE 762
            +C  C+ GK  K P  K    + TE+L+LVHTD+ GP+   S  G ++ ++F+DDY+RM  ++ L+  S+      +F+  +     LQ++RLRS+ G E T   F++F  + GI+   +  YT QQNGV+ER  R+V EM R  +    + + + A+A + +VY LN   T+   G T +E WHG TP + +L+VFGC  Y +    +R KLD K+ VG+FLGY   S  YRIYNP  K + +SRNV+FDE
Sbjct:  429 LCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680          
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 196 bits (499), Expect = 1.490e-53
Identity = 107/254 (42.13%), Postives = 149/254 (58.66%), Query Frame = 1
Query:   10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVD-ESFEGRRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEED 768
            +C AC +GK  +Q  K  R  +    LE+VHTDI GP D  S  G R+ + F+DD+SR   IY L+  SEAL  LK+F+    K +   ++ LRS++G E T + F +F  E+GI    +A YT QQNGVAER  R++ +M RS +    + R + A+A   AVY LNR  T+     T  E W G  P + + ++FGC AY       R+KLDD+    +F+GYDE S +YR+YNP  K + +SR+V FDE D
Sbjct:  364 LCEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEAD 617          
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A2H9ZU53_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZU53_9ASPA)

HSP 1 Score: 189 bits (480), Expect = 1.980e-53
Identity = 101/252 (40.08%), Postives = 156/252 (61.90%), Query Frame = 1
Query:   10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVD-ESFEGRRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDE 762
            +C  C  GK S++     R  + T  LELV++D+ GP+  ES  G R+ I+F+DDY+RM  +Y L++ SEAL A K F+  + + +   I+ LR+++G E     F+ F  ENGI +  +A YT +QNGVAER  R++ EM RS +    +  ++ A++   AVY LN + T+  + RT YE W G   ++++L++FGC AYV   S  R KL+DK+   +F+GY   S +YR+YNP +K + +SR+V F+E
Sbjct:  158 ICEECLYGKQSRKSFLIGRTCRATHPLELVYSDLCGPMRIESLSGSRYFILFIDDYTRMNWVYFLKNKSEALEAFKIFKAFVERQSGYFIKVLRTDRGGEFLSHEFKAFCEENGIHRELTAPYTPEQNGVAERKNRTIVEMARSLLKAKGIPNQFWAESVATAVYLLNISPTKAILNRTLYEVWKGRKSRISHLKIFGCIAYVYVNSHDRHKLEDKSEKCIFIGYCPQSKAYRLYNPCSKKLIISRSVIFEE 409          
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 196 bits (497), Expect = 2.840e-53
Identity = 105/253 (41.50%), Postives = 156/253 (61.66%), Query Frame = 1
Query:    7 GVCSACERGKASKQPVKKYREEQTTERLELVHTDITGPV-DESFEGRRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDE 762
            G+C  C RGK +++ + K    + +  L+LVHTDI GP+   S  G+R++I F+DDYSR    + L   SEAL A K+F+    +   L +  LRS++G E    AF+ +  ENGIK+  +AAYT QQNG+AER  RS+  M R  M+  ++ RR+  +A   AV+ LNR+ +      T  E+W    P + ++RVFGC AY +   ++R KLD+K+   VF+G  ++S +YR+YNPE K + +SR+VRFDE
Sbjct:  472 GLCDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDE 724          
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR)

HSP 1 Score: 194 bits (493), Expect = 7.640e-53
Identity = 104/253 (41.11%), Postives = 152/253 (60.08%), Query Frame = 1
Query:   10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVDESFEG-RRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEE 765
            VC  C +GK  +  + +    + +E+LELVH DI GP+    EG +R+ I F+DDYSR   +Y L + S+A    K F+  + K   L I+ LR+++G E T   F+++   NGIK+  +AAYT QQNGVAER  R+V  M RS ++  N+ R++ A+A + A Y LNR  T      T  E W G  P + +LRVFGC AY      +R KL+DK+R  V  G  E+S +YR+Y+P +K + +SR+V F+E+
Sbjct:  162 VCKNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETDLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLNRCPTSSVKEMTPVEAWCGVKPSVGHLRVFGCIAYAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKRIIISRDVVFEED 414          
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 194 bits (492), Expect = 9.870e-53
Identity = 98/253 (38.74%), Postives = 155/253 (61.26%), Query Frame = 1
Query:   10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVDESFEGR-RFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEE 765
            +C  C  GK  ++   K    +  + LEL+HTDI GP+  S  G+  + ++F+DD+SR   +Y L+  SEA    K+F+  + K + L I+ +RS++G E T   F+ F  ++GI++  +   + QQNGVAER  R++ +M RS + + N+ + + A+A   AVY LNR+ TR   G+T  E W G  P +++LRVFG  AY     + R KLDDK++  +F+GYD +S  Y++YNP+  ++ +SR+V FDEE
Sbjct:  149 LCEGCLLGKQFRKSFPKKSSSRAQKPLELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEFDEE 401          
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A2Z6P4L8_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4L8_TRISU)

HSP 1 Score: 193 bits (490), Expect = 2.600e-52
Identity = 102/253 (40.32%), Postives = 152/253 (60.08%), Query Frame = 1
Query:   10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVDESFEG-RRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEE 765
            VC+ C +GK  +  + +    + +E+LELVH DI GP+    EG +R+ I F+DDYSR   +Y L + S+A    K F+  + K   L I+ LR+++G E T   F+++   NGIK+  + AYT QQNGVAER  R+V  M RS ++  N+ R++  +A + A Y LNR  T      T  E W+G  P + +LRVFGC AY      +R KL+DK+R  V  G  E+S +YR+Y+P +K + +SR+V F+E+
Sbjct:  466 VCTNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYGMKPSVGHLRVFGCIAYAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKRIIISRDVVFEED 718          
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 189 bits (479), Expect = 4.210e-51
Identity = 101/252 (40.08%), Postives = 148/252 (58.73%), Query Frame = 1
Query:   10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPV-DESFEGRRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDE 762
            +C  C  GK  + P  +         LELVH DI GP    SF  +R+ I+FVDD+SRM  +Y L   SEA    KQF+      +   ++ LR+++G E T   F ++   NGIK+  +A YT QQNGVAER  R++ EM RS +   ++   + A+A H AV+ LNR+ T+    +T +E WH   PK+++ ++FGCTAY    SQ+R K D+K    +F+GY + S +YR+ +P  KS+ +SR+V FDE
Sbjct:  158 ICEGCIFGKFHRLPFSQSSWRAKAP-LELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 408          
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A2Z6N9Q0_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N9Q0_TRISU)

HSP 1 Score: 189 bits (480), Expect = 5.150e-51
Identity = 98/264 (37.12%), Postives = 156/264 (59.09%), Query Frame = 1
Query:   10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVDE-SFEGRRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEEDVVTGHRGQLE 798
            +C  C+ GK S+ P       + +E+L+L+HTD+ GP+   S  G ++ ++F+DD++RM  ++ LR  S+   A + F+  + K    QI++LRS+ G E T   F+ F  + GI+  F+  YT QQNGV+ER  R+V EM R  +    + + + A+A + +VY LN   T+   G+T +E W+   P + +LR+FGC  Y+   + +R KL+ K+ VG+FLGY  +S  YRIYN E K + +SR+V+FDE       + Q E
Sbjct:  491 MCDVCQFGKQSRLPFPVESTWRASEKLQLIHTDVCGPMPTTSLNGNKYFLLFIDDFTRMCWVFFLRQESDVFPAFQSFKLMVEKEVDCQIKKLRSDNGNEYTAGEFKVFCEQVGIQHQFTVPYTPQQNGVSERKNRTVMEMARCLLFEKGIPKTFWAEAVNTSVYLLNLLPTKVLKGKTPFEAWYERKPSVEHLRIFGCVCYLHVPNVKRDKLETKSVVGIFLGYSSNSKGYRIYNLETKKILVSRDVQFDEFSKWNWEKSQTE 754          
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A5A7UNW6_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UNW6_CUCME)

HSP 1 Score: 188 bits (477), Expect = 6.200e-51
Identity = 99/253 (39.13%), Postives = 145/253 (57.31%), Query Frame = 1
Query:   10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVDESFEGRR-FVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEE 765
            +C  C  GK S++   +    +    LELVHTD+ GP+  S  G+  + ++F+DD+SR   +Y ++  SE     K+F+  + K +   I+ LRS++G E T   F+ F +ENGI++  +  +T QQNGV ER  R++  M RS +    M + + A A   AVY  NR+ TR    +T  + W G  P + +LRVFGC AY     Q+R KLDDK+   VF+GYD  S  Y++YNP  K   +SR+V FDEE
Sbjct:  388 LCEGCLHGKQSRKSFPQESSWRARRPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE 640          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151T355_CAJCA2.300e-5640.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A2WSU7_HIBSY1.490e-5342.13Integrase catalytic domain-containing protein n=2 ... [more]
A0A2H9ZU53_9ASPA1.980e-5340.08Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2IM54_9BRAS2.840e-5341.50Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A2K3KY79_TRIPR7.640e-5341.11Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
UPI001F0044649.870e-5338.74DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A2Z6P4L8_TRISU2.600e-5240.32Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A4Y1QWW3_PRUDU4.210e-5140.08Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A2Z6N9Q0_TRISU5.150e-5137.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A5A7UNW6_CUCME6.200e-5139.13Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4961contigH-paniculata_contig4961:1558..2355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog4096.XP_009763596.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs381GC@33090,3GQK5@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size798
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930462.05818-CDS-H-paniculata_contig4961:1557..17401622930462.05818-CDS-H-paniculata_contig4961:1557..1740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4961 1558..1740 -
1691481302.4617536-CDS-H-paniculata_contig4961:1557..17401691481302.4617536-CDS-H-paniculata_contig4961:1557..1740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4961 1558..1740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930462.0771668-UTR-H-paniculata_contig4961:1740..23551622930462.0771668-UTR-H-paniculata_contig4961:1740..2355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4961 1741..2355 -
1691481302.4745657-UTR-H-paniculata_contig4961:1740..23551691481302.4745657-UTR-H-paniculata_contig4961:1740..2355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4961 1741..2355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4961.12154.1prot_H-paniculata_contig4961.12154.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4961 1558..1740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4961.12154.1

>prot_H-paniculata_contig4961.12154.1 ID=prot_H-paniculata_contig4961.12154.1|Name=mRNA_H-paniculata_contig4961.12154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEE
DVVTGHRGQLE
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mRNA from alignment at H-paniculata_contig4961:1558..2355-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4961.12154.1 ID=mRNA_H-paniculata_contig4961.12154.1|Name=mRNA_H-paniculata_contig4961.12154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=798bp|location=Sequence derived from alignment at H-paniculata_contig4961:1558..2355- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACCCGGTGTCTGTTCAGCGTGTGAGCGAGGGAAGGCATCTAAGCAACC AGTGAAGAAGTATCGGGAAGAGCAGACAACGGAGCGGCTGGAGCTAGTGC ATACTGATATCACAGGACCAGTAGACGAATCTTTCGAGGGACGCCGTTTC GTCATTATCTTCGTGGACGACTACAGCCGAATGCGTACGATCTACGCCCT GAGACACAACTCAGAGGCGTTATGGGCTCTGAAACAGTTCGAGGAAGACA TAGCGAAGGCAAACGTGCTACAAATAAGACGTCTTCGGTCAAACCAAGGA AAAGAGCTTACAGGAGAAGCGTTCCGACAGTTTAGTCTGGAAAATGGCAT CAAGCAGTAATTTTCTGCCGCCTACACGCTGCAGCAAAACGGTGTGGCGG AGCGCAGCTGACGTAGCGTTTTCGAGATGAACCGAAGTAAGATGATCACC GCCAACATGGGCCGCAGGTATTGAGCGGACGCGGCGCACAAGGCTGTGTA CTGCTTAAATCGCGCCCAGACGCGACCGCACATCGGAAGGACGCGGTATG AGAAATGGCACGGCACGACACCAAAGCTTAACTACCTTCGTGTCTTCGGC TGCACGGCGTACGTGATGTTCCAGTCGCAGCAGAGACGTAAACTCGACGA CAAAGCACGGGTGGGGGTGTTTCTAGGGTACGACGAAGACAGCCCGAGTT ATCGCATATATAACCCGGAAAATAAAAGCGTCCAGTTGAGCAGGAACGTG AGATTTGACGAAGAGGATGTCGTAACCGGTCATCGCGGACAGCTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4961:1558..2355-

>mRNA_H-paniculata_contig4961.12154.1 ID=mRNA_H-paniculata_contig4961.12154.1|Name=mRNA_H-paniculata_contig4961.12154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig4961:1558..2355- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCAGTCGCAGCAGAGACGTAAACTCGACGACAAAGCACGGGTGGG
GGTGTTTCTAGGGTACGACGAAGACAGCCCGAGTTATCGCATATATAACC
CGGAAAATAAAAGCGTCCAGTTGAGCAGGAACGTGAGATTTGACGAAGAG
GATGTCGTAACCGGTCATCGCGGACAGCTGGAGATGTTCCAGTCGCAGCA
GAGACGTAAACTCGACGACAAAGCACGGGTGGGGGTGTTTCTAGGGTACG
ACGAAGACAGCCCGAGTTATCGCATATATAACCCGGAAAATAAAAGCGTC
CAGTTGAGCAGGAACGTGAGATTTGACGAAGAGGATGTCGTAACCGGTCA
TCGCGGACAGCTGGAG
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