mRNA_H-paniculata_contig4961.12154.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 204 bits (520), Expect = 2.300e-56 Identity = 102/252 (40.48%), Postives = 151/252 (59.92%), Query Frame = 1
Query: 10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVDE-SFEGRRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDE 762
+C C+ GK K P K + TE+L+LVHTD+ GP+ S G ++ ++F+DDY+RM ++ L+ S+ +F+ + LQ++RLRS+ G E T F++F + GI+ + YT QQNGV+ER R+V EM R + + + + A+A + +VY LN T+ G T +E WHG TP + +L+VFGC Y + +R KLD K+ VG+FLGY S YRIYNP K + +SRNV+FDE
Sbjct: 429 LCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY) HSP 1 Score: 196 bits (499), Expect = 1.490e-53 Identity = 107/254 (42.13%), Postives = 149/254 (58.66%), Query Frame = 1
Query: 10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVD-ESFEGRRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEED 768
+C AC +GK +Q K R + LE+VHTDI GP D S G R+ + F+DD+SR IY L+ SEAL LK+F+ K + ++ LRS++G E T + F +F E+GI +A YT QQNGVAER R++ +M RS + + R + A+A AVY LNR T+ T E W G P + + ++FGC AY R+KLDD+ +F+GYDE S +YR+YNP K + +SR+V FDE D
Sbjct: 364 LCEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEAD 617
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A2H9ZU53_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZU53_9ASPA) HSP 1 Score: 189 bits (480), Expect = 1.980e-53 Identity = 101/252 (40.08%), Postives = 156/252 (61.90%), Query Frame = 1
Query: 10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVD-ESFEGRRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDE 762
+C C GK S++ R + T LELV++D+ GP+ ES G R+ I+F+DDY+RM +Y L++ SEAL A K F+ + + + I+ LR+++G E F+ F ENGI + +A YT +QNGVAER R++ EM RS + + ++ A++ AVY LN + T+ + RT YE W G ++++L++FGC AYV S R KL+DK+ +F+GY S +YR+YNP +K + +SR+V F+E
Sbjct: 158 ICEECLYGKQSRKSFLIGRTCRATHPLELVYSDLCGPMRIESLSGSRYFILFIDDYTRMNWVYFLKNKSEALEAFKIFKAFVERQSGYFIKVLRTDRGGEFLSHEFKAFCEENGIHRELTAPYTPEQNGVAERKNRTIVEMARSLLKAKGIPNQFWAESVATAVYLLNISPTKAILNRTLYEVWKGRKSRISHLKIFGCIAYVYVNSHDRHKLEDKSEKCIFIGYCPQSKAYRLYNPCSKKLIISRSVIFEE 409
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS) HSP 1 Score: 196 bits (497), Expect = 2.840e-53 Identity = 105/253 (41.50%), Postives = 156/253 (61.66%), Query Frame = 1
Query: 7 GVCSACERGKASKQPVKKYREEQTTERLELVHTDITGPV-DESFEGRRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDE 762
G+C C RGK +++ + K + + L+LVHTDI GP+ S G+R++I F+DDYSR + L SEAL A K+F+ + L + LRS++G E AF+ + ENGIK+ +AAYT QQNG+AER RS+ M R M+ ++ RR+ +A AV+ LNR+ + T E+W P + ++RVFGC AY + ++R KLD+K+ VF+G ++S +YR+YNPE K + +SR+VRFDE
Sbjct: 472 GLCDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDE 724
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR) HSP 1 Score: 194 bits (493), Expect = 7.640e-53 Identity = 104/253 (41.11%), Postives = 152/253 (60.08%), Query Frame = 1
Query: 10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVDESFEG-RRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEE 765
VC C +GK + + + + +E+LELVH DI GP+ EG +R+ I F+DDYSR +Y L + S+A K F+ + K L I+ LR+++G E T F+++ NGIK+ +AAYT QQNGVAER R+V M RS ++ N+ R++ A+A + A Y LNR T T E W G P + +LRVFGC AY +R KL+DK+R V G E+S +YR+Y+P +K + +SR+V F+E+
Sbjct: 162 VCKNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETDLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLNRCPTSSVKEMTPVEAWCGVKPSVGHLRVFGCIAYAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKRIIISRDVVFEED 414
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464) HSP 1 Score: 194 bits (492), Expect = 9.870e-53 Identity = 98/253 (38.74%), Postives = 155/253 (61.26%), Query Frame = 1
Query: 10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVDESFEGR-RFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEE 765
+C C GK ++ K + + LEL+HTDI GP+ S G+ + ++F+DD+SR +Y L+ SEA K+F+ + K + L I+ +RS++G E T F+ F ++GI++ + + QQNGVAER R++ +M RS + + N+ + + A+A AVY LNR+ TR G+T E W G P +++LRVFG AY + R KLDDK++ +F+GYD +S Y++YNP+ ++ +SR+V FDEE
Sbjct: 149 LCEGCLLGKQFRKSFPKKSSSRAQKPLELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEFDEE 401
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A2Z6P4L8_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4L8_TRISU) HSP 1 Score: 193 bits (490), Expect = 2.600e-52 Identity = 102/253 (40.32%), Postives = 152/253 (60.08%), Query Frame = 1
Query: 10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVDESFEG-RRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEE 765
VC+ C +GK + + + + +E+LELVH DI GP+ EG +R+ I F+DDYSR +Y L + S+A K F+ + K L I+ LR+++G E T F+++ NGIK+ + AYT QQNGVAER R+V M RS ++ N+ R++ +A + A Y LNR T T E W+G P + +LRVFGC AY +R KL+DK+R V G E+S +YR+Y+P +K + +SR+V F+E+
Sbjct: 466 VCTNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYGMKPSVGHLRVFGCIAYAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKRIIISRDVVFEED 718
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU) HSP 1 Score: 189 bits (479), Expect = 4.210e-51 Identity = 101/252 (40.08%), Postives = 148/252 (58.73%), Query Frame = 1
Query: 10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPV-DESFEGRRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDE 762
+C C GK + P + LELVH DI GP SF +R+ I+FVDD+SRM +Y L SEA KQF+ + ++ LR+++G E T F ++ NGIK+ +A YT QQNGVAER R++ EM RS + ++ + A+A H AV+ LNR+ T+ +T +E WH PK+++ ++FGCTAY SQ+R K D+K +F+GY + S +YR+ +P KS+ +SR+V FDE
Sbjct: 158 ICEGCIFGKFHRLPFSQSSWRAKAP-LELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 408
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A2Z6N9Q0_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N9Q0_TRISU) HSP 1 Score: 189 bits (480), Expect = 5.150e-51 Identity = 98/264 (37.12%), Postives = 156/264 (59.09%), Query Frame = 1
Query: 10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVDE-SFEGRRFVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEEDVVTGHRGQLE 798
+C C+ GK S+ P + +E+L+L+HTD+ GP+ S G ++ ++F+DD++RM ++ LR S+ A + F+ + K QI++LRS+ G E T F+ F + GI+ F+ YT QQNGV+ER R+V EM R + + + + A+A + +VY LN T+ G+T +E W+ P + +LR+FGC Y+ + +R KL+ K+ VG+FLGY +S YRIYN E K + +SR+V+FDE + Q E
Sbjct: 491 MCDVCQFGKQSRLPFPVESTWRASEKLQLIHTDVCGPMPTTSLNGNKYFLLFIDDFTRMCWVFFLRQESDVFPAFQSFKLMVEKEVDCQIKKLRSDNGNEYTAGEFKVFCEQVGIQHQFTVPYTPQQNGVSERKNRTVMEMARCLLFEKGIPKTFWAEAVNTSVYLLNLLPTKVLKGKTPFEAWYERKPSVEHLRIFGCVCYLHVPNVKRDKLETKSVVGIFLGYSSNSKGYRIYNLETKKILVSRDVQFDEFSKWNWEKSQTE 754
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Match: A0A5A7UNW6_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UNW6_CUCME) HSP 1 Score: 188 bits (477), Expect = 6.200e-51 Identity = 99/253 (39.13%), Postives = 145/253 (57.31%), Query Frame = 1
Query: 10 VCSACERGKASKQPVKKYREEQTTERLELVHTDITGPVDESFEGRR-FVIIFVDDYSRMRTIYALRHNSEALWALKQFEEDIAKANVLQIRRLRSNQGKELTGEAFRQFSLENGIKQ*FSAAYTLQQNGVAERS*RSVFEMNRSKMITANMGRRY*ADAAHKAVYCLNRAQTRPHIGRTRYEKWHGTTPKLNYLRVFGCTAYVMFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEE 765
+C C GK S++ + + LELVHTD+ GP+ S G+ + ++F+DD+SR +Y ++ SE K+F+ + K + I+ LRS++G E T F+ F +ENGI++ + +T QQNGV ER R++ M RS + M + + A A AVY NR+ TR +T + W G P + +LRVFGC AY Q+R KLDDK+ VF+GYD S Y++YNP K +SR+V FDEE
Sbjct: 388 LCEGCLHGKQSRKSFPQESSWRARRPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE 640 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4961.12154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4961.12154.1 >prot_H-paniculata_contig4961.12154.1 ID=prot_H-paniculata_contig4961.12154.1|Name=mRNA_H-paniculata_contig4961.12154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp MFQSQQRRKLDDKARVGVFLGYDEDSPSYRIYNPENKSVQLSRNVRFDEEback to top mRNA from alignment at H-paniculata_contig4961:1558..2355- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4961.12154.1 ID=mRNA_H-paniculata_contig4961.12154.1|Name=mRNA_H-paniculata_contig4961.12154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=798bp|location=Sequence derived from alignment at H-paniculata_contig4961:1558..2355- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4961:1558..2355- >mRNA_H-paniculata_contig4961.12154.1 ID=mRNA_H-paniculata_contig4961.12154.1|Name=mRNA_H-paniculata_contig4961.12154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig4961:1558..2355- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |